BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477379
Length=862
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01440.1 | Symbols: PQL1, PQL2 | PsbQ-like 1 | chr3:168435-1... 1118 0.0
> AT3G01440.1 | Symbols: PQL1, PQL2 | PsbQ-like 1 | chr3:168435-169618
FORWARD LENGTH=917
Length=917
Score = 1118 bits (605), Expect = 0.0
Identities = 713/765 (93%), Gaps = 8/765 (1%)
Strand=Plus/Plus
Query 1 ACAAGAACCGGGGCTGGTACCTAAAGCTTACTCTCTAGCTAACTACAATGGCTCACTTCT 60
|||||||| | ||||| |||||||||||| |||| |||||| ||||||||||||||
Sbjct 1 ACAAGAACAGAGGCTGACACCTAAAGCTTA--CTCT--CTAACTGCAATGGCTCACTTCA 56
Query 61 TAGACCTCAACAGTCTCACCAACACTTCACCGT-TGATTACGAAACTATCCGAGAATCGT 119
||||||||||||||||||||||||||| ||||| | || |||||||| |||||| ||||
Sbjct 57 TAGACCTCAACAGTCTCACCAACACTTTACCGTCT-CTTCCGAAACTACCCGAGAGTCGT 115
Query 120 AAAACCGGGAAATCTGGCGGGTTTGTTTGCAGGAGAAGTGAAGAATTTCAAGAACCGGAT 179
|||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 116 AAAACCGGGAAATCCAGCGGGTTTGCTTGCAGGAGAACTGAAGAATTTCAAGAACCGGAT 175
Query 180 TCACTTCATTTCACAAGACGGATGACATTGGGATTTGCTGTCTCGATAGGTCTAACCGGA 239
|| | || ||||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 176 TCGGTACAGATCACAAGACGGATGACATTAGGATTTGCTGTCTCAATAGGTCTTACCGGA 235
Query 240 ATTTTCGGCGAAAATAATGTTTCCTTGGCACAAGACAACGGGTTTTGGATCGATGGCCCT 299
||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 236 ATTCTCGGCGAAAATAATGTTTCCTTGGCACAAGACAATGGGTTTTGGATTGATGGTCCT 295
Query 300 CTTCCAATTCCTCCTATTTACAACAATATCGTGAATGAGAAGACGGGAACAAGAACATTC 359
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 296 CTTCCAATTCCTCCTATTTACAACAATATCGTGAATGAGAAGACGGGAACGAGAACATTC 355
Query 360 ATAAAGAAAGGAGTGTATGTAGCGGATATCGGGACGAAAGGAAGAATGTATAGAGTTAAA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 ATAAAGAAAGGAGTGTATGTAGCGGATATCGGGACGAAAGGAAGAATGTATAGAGTTAAA 415
Query 420 AAGAATGCTTTTGATCTGTTGGCAATGGAGGATTTGATCGGACCAGATACTTTAAACTAT 479
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 AAGAATGCTTTTGATCTCTTGGCAATGGAGGATTTGATCGGACCAGATACTTTAAACTAT 475
Query 480 GTTAAAAAGTACTTGAGGCTTAAATCCACCTTTTTGTTCTACGATTTTGACAATCTTATC 539
|| |||||||||||||||||||||||||| |||||||| |||||||| |||||||| |||
Sbjct 476 GTGAAAAAGTACTTGAGGCTTAAATCCACATTTTTGTTTTACGATTTCGACAATCTCATC 535
Query 540 TCTGCTGCTGCCTCTGAAGACAAGCAACCTCTCACTGATTTAGCCAACAGGTTGTTCGAC 599
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 536 TCTGCTGCTGCCTCTGAAGACAAGCAACCTCTCACTGATTTAGCCAACAGATTGTTCGAC 595
Query 600 AATTTTGAAAAGCTTGAAGATGCAGCTAAGAAGAAGAACTTAGCAGGGACAGAATCATGT 659
||||| ||||||||||||||||||||||||| |||||||||||||| ||| ||||| |||
Sbjct 596 AATTTCGAAAAGCTTGAAGATGCAGCTAAGACGAAGAACTTAGCAGAGACGGAATCGTGT 655
Query 660 TATAAAGATACAAAGTTTCTTCTTCAAGAGGTAATGACCAGAATGGCATGAACCTGGTTC 719
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 656 TATAAAGATACAAAGTTTCTTCTTCAAGAGGTAATGACCAGAATGGCATGATCCTGGTTC 715
Query 720 GGTTT-TCACCGGTTTACTTGCTATTGAAGATCATTCATGGTTGA 763
||||| | |||||||||||||||||||| |||| | |||||||||
Sbjct 716 GGTTTAT-ACCGGTTTACTTGCTATTGATGATCCTACATGGTTGA 759
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42045981039
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5