BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477400
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01280.1 | Symbols: VDAC1, ATVDAC1 | voltage dependent anion... 1620 0.0
> AT3G01280.1 | Symbols: VDAC1, ATVDAC1 | voltage dependent anion
channel 1 | chr3:85601-87858 FORWARD LENGTH=1230
Length=1230
Score = 1620 bits (877), Expect = 0.0
Identities = 988/1041 (95%), Gaps = 10/1041 (1%)
Strand=Plus/Plus
Query 1 TCCTCCAACTTTCTCAGATAAGCAACAATGGTGAAAGGTCCTGGTCTCTACACCGAAATC 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 127 TCCTCCAACTTTCTCAGATAAGCAACAATGGTGAAAGGTCCCGGTCTCTACACCGAAATC 186
Query 61 GGCAAAAAAGCCAGAGATCTTCTGTACAAGGACCACAACAGTGACCAGAAATTCAGTATC 120
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 187 GGCAAAAAGGCCAGAGATCTTCTGTACAAAGACCACAACAGTGACCAGAAATTCAGTATC 246
Query 121 ACCACTTTCTCTCCTGCCGGTGTTGCCATCACCTCAACCGGAACTAAGAAAGGCGACTTA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 247 ACCACTTTCTCTCCTGCCGGTGTTGCCATCACCTCAACCGGAACTAAGAAAGGTGACTTA 306
Query 181 TTGTTGGGAGATGTAGCTTTCCAATCGAGGCAAAAGAACATTACTACTGATTTGAAAGTT 240
|||||||||||||| ||||| || ||||||| ||||||||||||||||||||||||||||
Sbjct 307 TTGTTGGGAGATGTCGCTTTTCAGTCGAGGCGAAAGAACATTACTACTGATTTGAAAGTT 366
Query 241 TGCACTGATTCTACTGTTCTGATCACTGCTACGGTTGATGAGGCTGCACCTGGACTGAAG 300
||||||||||||||| |||||||||| ||||| ||||||||||||||||| ||||||| |
Sbjct 367 TGCACTGATTCTACTTTTCTGATCACCGCTACCGTTGATGAGGCTGCACCCGGACTGAGG 426
Query 301 TCAATCTTCAGCTTCAAGGTTCCTGACCAAAATTCTGGCAAGATTGAGCTGCAATACTTG 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 427 TCAATCTTCAGCTTCAAGGTTCCTGACCAAAATTCTGGCAAGGTTGAGCTGCAATACTTG 486
Query 361 CATGACTACGCCGGTATCAGCACGAGCATGGGATTGACTCAGAACCCAACTGTCAACTTC 420
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 487 CATGAGTACGCCGGTATCAGCACAAGCATGGGATTGACTCAGAACCCAACTGTCAACTTC 546
Query 421 TCCGGTGTTATTGGCACCAATGTCTTGGCTGTTGGTACTGATGTTTCATTCGACACCAAG 480
|| ||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 547 TCTGGTGTGATTGGCTCCAATGTCTTGGCTGTTGGTACTGATGTTTCATTTGACACCAAG 606
Query 481 TCTGGAAATTTCACCAAGATCAATGCTGGTTTAAGCGTCACCAAGGATGACTTAATTGCC 540
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 607 TCTGGAAATTTCACCAAGATCAATGCTGGTTTAAGCTTCACCAAGGAGGACTTAATTGCC 666
Query 541 TCCCTTACTGTGAATGAGAAGGGCGATCTATTGAATGCATCTTACTATCAAATTGTGAAC 600
|||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 667 TCCCTTACTGTGAACGACAAGGGCGATCTATTGAATGCATCTTACTATCACATTGTGAAC 726
Query 601 CCGCTGTTCAACACTGCGGTTGGAGCCGAAGTGAGCCACAAGTTCTCTAGCAAGGACAAC 660
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 727 CCGCTGTTCAACACTGCGGTTGGAGCCGAAGTGAGCCACAAGTTATCTAGCAAGGACAGC 786
Query 661 ACCATAACTGTTGGAACACAGCACTCGCTTGACCCCTTGACCTCTGTGAAGGCTCGTGTC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 ACCATAACTGTTGGAACACAGCACTCGCTTGACCCCTTGACCTCTGTGAAGGCTCGTGTC 846
Query 721 AATAGTGCAGGTATTGCAAGTGCGCTCATTCAACACGAGTGGAAGCCCAAGTCGTTCTTC 780
|||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct 847 AATAGTGCGGGTATTGCAAGTGCTCTCATTCAACACGAGTGGAAACCCAAGTCATTCTTC 906
Query 781 ACAATCTCTGGAGAAGTCGACACAAAGTCCATTGACAAGAGTGCTAAAGTTGGGTTGGCT 840
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 907 ACAATCTCTGGAGAAGTCGACACAAAGTCAATTGACAAGAGTGCTAAAGTTGGATTGGCT 966
Query 841 CTCGCACTCAAGCCTTGAAACTGAGATGGAAGAAGAAGTTGCTATAGCTTTTT-AA-CTA 898
|||||||||||||||||||||||||||||||||||||||||| |||| ||||| || |||
Sbjct 967 CTCGCACTCAAGCCTTGAAACTGAGATGGAAGAAGAAGTTGCAATAGTTTTTTTAAACTA 1026
Query 899 GTTTCTTTCTACGTACTCTGTTTTT-CTCTGCTTGGTTCATGGTTTTAAGGGGGGTACTA 957
||||||||||||||||||||||||| |||||||||||||||||||| | | ||| ||||
Sbjct 1027 GTTTCTTTCTACGTACTCTGTTTTTTCTCTGCTTGGTTCATGGTTTGA-GTGGGCAACTA 1085
Query 958 GTACTGATCTTTCCCATTT-CTTTGTTGGATTTGTAGAAGAATAAAAAGGTTGAAAACGG 1016
|||||||||||||||| | | | |||||||||||||||||||||||||||||| |
Sbjct 1086 ---CTGATCTTTCCCATTTTCCT-GCCGGATTTGTAGAAGAATAAAAAGGTTGAAAATG- 1140
Query 1017 ATCATCTTGAGATGGTGATGA 1037
|||||||||||||||||||||
Sbjct 1141 ATCATCTTGAGATGGTGATGA 1161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53061976065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5