BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477401
Length=1822
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01270.1 | Symbols: | Pectate lyase family protein | chr3:8... 2844 0.0
AT5G15110.1 | Symbols: | Pectate lyase family protein | chr5:4... 913 0.0
> AT3G01270.1 | Symbols: | Pectate lyase family protein | chr3:82685-84897
REVERSE LENGTH=1812
Length=1812
Score = 2844 bits (1540), Expect = 0.0
Identities = 1740/1832 (95%), Gaps = 31/1832 (2%)
Strand=Plus/Plus
Query 1 TTCGCAATACGATTCATCTACCAAAAAAGGCTTTTAGGTCAAACAGAAATAACGACCTAA 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 TTCGCAATACGATTCATCTACCAAAAAAGGC-TTTAGGTCAAACAGAAATAACGACCTAA 59
Query 61 AGCCATGTTTAAAGCTTAGCAGTTCTCCACATATATTTCAATATATAAAAAGATTTCCCC 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 60 AGCTATGTTTAAAGCTTAGCAGTTCTCCACATATATTTCAATATATAAAAAGATTACCCC 119
Query 121 TTaaaaaaaaaaaaaaaaaaaaaaaCTGATCTAAACTG-TTTCTGT-GAA-AAAGGGGTA 177
|| |||||| |||| | | | || | || |||| || || |||||||||
Sbjct 120 TT-----TTTAAAAAATAAAATAGA-T-AT-T----TGTTTTCCGTAAAAGAAAGGGGTA 167
Query 178 ATCAAATAAAATGGAGACAGCTAGGCTTTTCAAATTAGTGTGTGTGTTTTGTATTGCCAG 237
|||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||
Sbjct 168 ATCAAATAAAATGGAGACGGCTAGGCTTTTCAAATTAGTGTGTGTGATATGTATTGCCAG 227
Query 238 TTTGATTCCGACCATACGAGCCAATGTTGCTGATGAGACCGATGATTATTGGGTAAACAA 297
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 228 TTTGATTCCGACCATACGAGCCAATGTTGCTGATGAGACCGATGAGTATTGGGTAAACAA 287
Query 298 GGCCAATGAAGCTCGTAAACATACCCTTATGGCTTACCATCCCGACCCTTATGAGATCGT 357
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 288 GGCCAATGAAGCTCGTAAACATACCCTTATGGCTTATCATCCCGACCCTTATGAGATCGT 347
Query 358 CGACCACTTCCACGAGCGTCATTACGACAACTCGACTGATGTCGAGGGGACCGAGGAAGA 417
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 348 CGACCACTTCCACGAGCGTCATTACGACAACTCGACTGACGTCGAGGGGACCGAGGAAGA 407
Query 418 GAAGGCGGTCGCTTCCGAGGAAGAAGACGTCATTGAGATGATTTCTAGTCCGACAAACAG 477
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 408 GAAGGCGGTCGCTTCCGAGGAAGAGGACGTCATTGAGATGATTTCTAGTCCGACAAACAG 467
Query 478 CACAAGGCGGAGCCTAACCGGTAGGGGCAAGGGAAAAGGAAAAGGAAAATGGAGCAAGCT 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 CACAAGGCGGAGCCTAACCGGTAGGGGCAAGGGAAAAGGAAAAGGAAAATGGAGCAAGCT 527
Query 538 AAAGGGACCTTGCACCGCAAGCAACCCGATTGATAAATGCTGGCGTTGCCAGCCCGATTG 597
|| |||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 528 AACGGGACCTTGCACCGCAAGCAACCCCATCGATAAATGCTGGCGTTGCCAGCCTGATTG 587
Query 598 GGCCAGGCGTCGCAAGAAGCTCGTTCATTGTGTCCGTGGGTTTGGTTACAGGACCACAGG 657
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 588 GGCCAGACGTCGCAAGAAGCTCGTTCACTGTGTCCGTGGGTTTGGTTACAGGACCACCGG 647
Query 658 AGGCAAACGCGGCCGTATATATGTGGTCACGAGCCCCAGAGACGATGATATGGTGAACCC 717
||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 648 AGGCAAACGCGGCCGCATCTATGTAGTCACGAGCCCCAGAGACGATGATATGGTGAACCC 707
Query 718 TAGACCTGGAACACTACGTCACGCTGTGATCCAGAAAGAACCTCTATGGATCATTTTTAA 777
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 708 TAGACCTGGAACACTACGTCACGCTGTGATCCAGAAAGAACCTCTATGGATCGTTTTTAA 767
Query 778 GCACGATATGAGCATTAGGTTAAACCAAGAGCTGATGATTGCTAGTCACAAGACAATCGA 837
|||||||||||||||| |||||| |||||||||||||||| ||||| |||||||||||||
Sbjct 768 GCACGATATGAGCATTCGGTTAAGCCAAGAGCTGATGATTACTAGTGACAAGACAATCGA 827
Query 838 TGCTCGTGGCGCTAACGTGCACATCGCATATGGTGCCGGTATTACGATGCAGTATGTGCA 897
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 828 TGCTCGTGGCGCTAACGTGCACATCGCATATGGTGCTGGTATCACGATGCAGTACGTGCA 887
Query 898 CAATATCATCATCCATGGGCTTCACATCCACCACATCGTGCAAAGCAGTGGTGGTATGAT 957
||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct 888 CAATATCATCATCCATGGGCTTCACGTCCACCACATCGTGAAAAGCAGTGGTGGTTTGAT 947
Query 958 AAGAGATTCGATTGACCACTTTGGGCAAAGAGGACG-GGCTGATGGAGATGGTATCTCTA 1016
||||||||||||| ||||||||||||| |||||| | |||||||||||||||||||||||
Sbjct 948 AAGAGATTCGATTAACCACTTTGGGCATAGAGGA-GAGGCTGATGGAGATGGTATCTCTA 1006
Query 1017 TCTTCGGGGCAACAAACATTTGGCTTGACCACATTTCTATGTCTAAATGCCAAGATGGCC 1076
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1007 TCTTTGGGGCAACAAACATTTGGCTTGACCACATTTCTATGTCTAAATGCCAAGATGGAC 1066
Query 1077 TCATCGACGCTATAATGGGTTCCACCGCAATCACCATCTCTAACTCTCATTTCACCCACC 1136
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 TTATCGACGCTATAATGGGTTCCACCGCAATCACCATCTCTAACTCTCATTTCACCCACC 1126
Query 1137 ACAACGATGTGATGTTGCTTGGTGCACAAGACAACAACATGGATGACAAGAAGATGCAAG 1196
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1127 ACAACGATGTGATGTTGCTTGGTGCACAAAACAACAACATGGATGACAAGAAGATGCAAG 1186
Query 1197 TCACAGTGGCTTACAACCATTTCGGTAAAGGACTTGTCCAGAGGATGCCTAGGATCCGAT 1256
||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||
Sbjct 1187 TCACAGTGGCTTACAACCATTTCGGAAAAGGACTTGTGCAGAGGATGCCTAGGGTCCGAT 1246
Query 1257 GGGGTTTCGTCCACGTTGTCAACAATGACTACACTCATTGGGAGCTTTACGCGATCGGTG 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 GGGGTTTCGTCCACGTTGTCAACAATGACTACACTCATTGGGAGCTTTACGCGATCGGTG 1306
Query 1317 GTAGCCAAGGTCCTACCATTCTCAGCCATGGAAACCGTTTCATCGCTCCTCCTCACAAAC 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 GTAGCCAAGGTCCTACCATTCTCAGCCATGGAAACCGTTTCATCGCTCCTCCTCACAAAC 1366
Query 1377 AACACTACAGAGAGGTGACAAAGAGGGATTATGCTTCAGAAAGTGAATGGAAAAACTGGA 1436
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1367 AACACTACAGAGAGGTGACAAAGAGGGATTATGCTTCAGAAAGCGAATGGAAAAACTGGA 1426
Query 1437 ACTGGAGATCCGAGAAAGATGTATTCATGAACAATGCATATTTCAGACAATCTGGAAATC 1496
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1427 ACTGGAGATCCGAGAAAGATGTTTTCATGAACAATGCATATTTCAGACAATCTGGAAATC 1486
Query 1497 CTCATTTCAAGTGTTCGCACTCTAGGCAACAGATGATTAAGCCCAAACATGGTGTGGCCG 1556
||||||||||||||||||| ||||||||||||||||| ||||||||| ||||| ||||||
Sbjct 1487 CTCATTTCAAGTGTTCGCATTCTAGGCAACAGATGATAAAGCCCAAAAATGGTATGGCCG 1546
Query 1557 TTTCTAAGCTTACCAAATACGCCGGAGCATTGGATTGCCGGGTCGGAAAAGCATGCTAAA 1616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1547 TTTCTAAGCTTACCAAATACGCCGGAGCATTGGATTGCCGGGTCGGAAAAGCATGCTAAA 1606
Query 1617 AAATATAACTCACTACTAAtttttttCTCTTTGTATCTAGGCCTATCTATATAAGAACTG 1676
|| |||||||||||||||| ||||||||||||||||| | |||||| ||| | ||||||
Sbjct 1607 AA-TATAACTCACTACTAAATTTTTTCTCTTTGTATCAAAGCCTAT--ATA-A-GAACTG 1661
Query 1677 ACAAAATCATGGGGTAAAA-TGGAAATTA-TT---CTAATTTATGAAAAAGTCTCTGTGT 1731
| ||||||||||||||||| ||||||||| || ||||||||||||| | ||||||||
Sbjct 1662 ATAAAATCATGGGGTAAAAATGGAAATTAATTATTCTAATTTATGAAAG-G-CTCTGTGT 1719
Query 1732 AAAGAATATATGCGAACGGCTTGATACTTTGTAACTCT-AATTTGTTTGTGTATGTTTTG 1790
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1720 AAAGAATCTATGCGAACGGCTTGATACTTTGTAACTCTTAATTTGTTTGTGTATGTTTTT 1779
Query 1791 TTGTGCTCGTTAATCTGtttttttGCAAGGAT 1822
|||||||||||||| |||||||||||||||||
Sbjct 1780 TTGTGCTCGTTAATTTGTTTTTTTGCAAGGAT 1811
> AT5G15110.1 | Symbols: | Pectate lyase family protein | chr5:4895750-4897682
FORWARD LENGTH=1635
Length=1635
Score = 913 bits (494), Expect = 0.0
Identities = 1155/1463 (79%), Gaps = 90/1463 (6%)
Strand=Plus/Plus
Query 181 AAATAAA-ATGGAGACAGCTAGGCTTTTCAAA-TTAG-TGTGTGTGTTTTGTATTGCCAG 237
||| ||| ||||||| | ||||| | ||||| || | ||| | ||||||||||||| |
Sbjct 209 AAAGAAAGATGGAGATGGTTAGGC-TGTCAAAGTT-GATGTTTACGTTTTGTATTGCC-G 265
Query 238 TT-TGATTCCGACCATACGAGCCAATGTTGCTGA--TGAGACCGATGATTATTGGGTAAA 294
|| | ||||||||||| |||| || || |||| || || ||| | |||| |||
Sbjct 266 TTCTAATTCCGACCATTCGAGGTAACATTTCTGAGCTG-GA-CGA-G--TATT-GGT-CG 318
Query 295 CAA-G-GCCAATGAAGCTC-GTA-AACAT-ACCCTT-ATGGCTTACCATCCCGACCCTTA 348
||| | ||| | ||||| | | | || | || ||| | ||||||||| | || |||||
Sbjct 319 CAACGAGCCGACGAAGC-CAG-AGAA-TTCACTCTTCA-AGCTTACCATTCTGATCCTTA 374
Query 349 TGAGATCGTCGACCACTTCCACGAGCGTCATTACGACAACTCGACTGATG-T-CGAGGGG 406
|| |||||||| ||||| ||||||||||| ||||||||||| ||||||| | | | |
Sbjct 375 CGAAATCGTCGATCACTTTCACGAGCGTCACTACGACAACTCTACTGATGTTAC-A-ACG 432
Query 407 ACC-GAGGAAGA--G-AAGGCG--G-TCGCTTCCGAGGAAGAAGACG-TCATTGAGATGA 458
|| |||||||| | | ||| | || |||||| |||| | ||||||| |||
Sbjct 433 -CCTGAGGAAGATGGTGATGCGAAGCCCGAAGAGGAGGAAAAAGA-GTTCATTGAAATGC 490
Query 459 TTTCTAGTC-CGACAAACAGCACAAGGCGGAGCCTAACCGGTAGGGGCAAGGGAAAAGGA 517
| || | |||| |||||||| || || ||||| | | | | || |||||
Sbjct 491 TCGGAAG-CTCGACGAACAGCACCAGACGAAGCCT-A-----A---G--A-GGTAAAGGC 537
Query 518 AAAGGAAAATGGAGCAAGCTAAAGGGACCTTGCACCGCAAGCAACCCGATTGATAAATGC 577
|| ||||||||||| ||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 538 AAGGGAAAATGGAGTAAGCTAAAGGGACCTTGTACCGCAAGTAACCCCATAGATAAATGT 597
Query 578 TGGCGTTGCCAG-CCCGATTGGGCCAGGCGTCGCAAGAAGCTCGTTCA--TTGTGTCCGT 634
|||||||||| | | |||||||| | |||||| |||||||| | || |||||||||
Sbjct 598 TGGCGTTGCC-GATCGGATTGGGCTAAGCGTCGGAAGAAGCT--TACACGTTGTGTCCGA 654
Query 635 GGGTTTGGTTACAGGACCACAGGAGGCAAACGCGGCCGTATATATGTGGTCACGAGC-CC 693
||||||||| ||||||| || ||||| ||||| || || || |||||||| || ||| |
Sbjct 655 GGGTTTGGTCACAGGACGACCGGAGGAAAACGAGGACGCATCTATGTGGTTACAAGCAAC 714
Query 694 CAGAGACGATGATATGGTGAACCCTAGACCTGGAACACTACGTCACGCTGTGATCCAGAA 753
| ||||| || ||||||||||||| ||| || ||| | ||||| || ||||| |||||
Sbjct 715 C-TCGACGAAGACATGGTGAACCCTAAACCGGGGACATTGCGTCATGCCGTGATTCAGAA 773
Query 754 AGAACCTCTATGGATCATTTTTAAGCACGATATGAGCATTAGGTTAAACCAAGAGCTGAT 813
|||||||| ||||||||||| ||| |||||||||||||| |||||||||||||||| |
Sbjct 774 GGAACCTCTGTGGATCATTTTCAAGAACGATATGAGCATTCGGTTAAACCAAGAGCTTCT 833
Query 814 GATTGCTAGTCACAAGACAATCGATGCTCGTGGCGCTAACGTGCACATCGCATATGGTGC 873
|||| ||| |||||||| |||||||| || || ||||| || || | || |||| ||
Sbjct 834 GATTAATAGCCACAAGACTATCGATGCACGAGGAGCTAATGTCCATGTAGCCCATGGCGC 893
Query 874 CGGTATTACGATGCAGTATGTGCACAATATCATCATCCATGGGCTTCACATCCACCACA- 932
|| || || ||||||| |||| | ||| || |||||||||| || || || |||||||
Sbjct 894 AGGGATCACAATGCAGTTTGTGAAAAATGTCGTCATCCATGGACTGCATATTCACCACAT 953
Query 933 -TCGTGCAAAGCAGTGGTGGTATGATAAGAGATTC-GATTGACCACTTTGGGCAAAGAGG 990
|| || | || || ||||||||||| |||| || | | ||||| ||| || || ||||
Sbjct 954 TTC-TG-AGAGTAGCGGTGGTATGATCCGAGACTCTG-TAGACCA-TTTCGG-AATGAGG 1008
Query 991 AC--GGGCTGATGGAGATGGTATCTCTATCTT-CGGGGCAACAAACATTTGGCTTGACCA 1047
|| | ||||||||||||||| | || || || || | | |||||||||||||||||
Sbjct 1009 ACTAGAGCTGATGGAGATGGTCTATCGAT-TTATGGTTCGTCTAACATTTGGCTTGACCA 1067
Query 1048 CATTTCTATGTCTAAATGCCAAGATGGCCTCATCGACGCTATAATGGGTTCCAC-CGCAA 1106
|| || ||||| ||||| |||||||| |||||||| || || | || ||||| || |
Sbjct 1068 TATCTCGATGTCGAAATGTCAAGATGGACTCATCGATGCCATTGTTGGATCCACTGGC-A 1126
Query 1107 TCACCATCTCTAACTCTCATTTCACCCACCACAACGATGTGATGTTGCTTGGTGCACAAG 1166
| || ||||| ||||| || ||||| ||||||||||||||||||||||||||||| |||
Sbjct 1127 TTACAATCTCCAACTCCCACTTCACTCACCACAACGATGTGATGTTGCTTGGTGCTCAAA 1186
Query 1167 ACAACAACATGGAT-G-ACAAGA-AGATGCAAGTCACAGTGGCTTACAACCATTTCGGTA 1223
||| | | ||| | | |||| | | |||||||||||||||||||| |||||||| ||||
Sbjct 1187 ACA-CGA-ATGAAGCGGACAA-ACATATGCAAGTCACAGTGGCTTATAACCATTTTGGTA 1243
Query 1224 AAGGACTTGTCCAGAGGATGCCTAGGATCCGATGGGG-TTTCGTCCACGTTGTCAACAAT 1282
|||||||||| ||||| |||||||||||||||||||| ||| || || ||||| |||||
Sbjct 1244 AAGGACTTGTACAGAGAATGCCTAGGATCCGATGGGGATTT-GTTCATGTTGTGAACAAC 1302
Query 1283 GACTACACTCATTGGGAGCTTTACGCGATCGGTGGTAGCCAAGGTCCTACCATTCTCAGC 1342
|||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 1303 GACTACACTCATTGGGAGCTTTACGCGATCGGAGGTAGTCAAGGTCCTACGATTCTCAGC 1362
Query 1343 CATGGAAACCGTTTCATCGCTCCTCCTCACAAACAACACTACAGAGAGGTGACAAAGAGG 1402
||||||||||| ||||| |||||||| ||||||| || ||||||||||||||||||||
Sbjct 1363 CATGGAAACCGATTCATAGCTCCTCCACACAAACCGCATTACAGAGAGGTGACAAAGAGA 1422
Query 1403 GATTATGCTTCAGAA-AGTGAATGGAAAAACTGGAACTGGAGATCCGAGAAAGATGTATT 1461
||||||||||| || | || |||||| |||||||||||||||| || |||||||||||
Sbjct 1423 GATTATGCTTCGGAGGAC-GAGTGGAAACACTGGAACTGGAGATCTGATAAAGATGTATT 1481
Query 1462 CATGAACAATGCATATTTCAGACAATCTGGAAATCCTCATTTCAAGTGTTCGCACTCTAG 1521
||||||| ||| ||||||||||||||||| |||||||| | ||| ||| | ||| | ||
Sbjct 1482 CATGAACGGTGCTTATTTCAGACAATCTGGTAATCCTCAATACAAATGTGCACACACAAG 1541
Query 1522 GCAACAGATGATTAAGCCCAAACATGG-TGTGGCCGTTTCTAAGCTTACCAAATACGCCG 1580
||||| ||||| || || ||| |||| | |||| ||||| ||||| |||||||| ||||
Sbjct 1542 ACAACAAATGATCAAACCGAAAAATGGAT-TGGCTGTTTCAAAGCTGACCAAATATGCCG 1600
Query 1581 GAGCA-TTGGATTGCCGGGTCGG 1602
||||| ||| ||||| | |||||
Sbjct 1601 GAGCACTTG-ATTGCAGAGTCGG 1622
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90160178820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5