BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg477403

Length=653
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G01250.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   832    0.0  


> AT3G01250.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant 
structures; EXPRESSED DURING: L mature pollen stage, M germinated 
pollen stage, 4 anthesis, C globular stage, petal differentiation 
and expansion stage; Has 50 Blast hits to 50 proteins 
in 23 species: Archae - 0; Bacteria - 28; Metazoa - 15; 
Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 3 (source: 
NCBI BLink). | chr3:79305-80105 FORWARD LENGTH=801
Length=801

 Score =  832 bits (450),  Expect = 0.0
 Identities = 498/522 (95%), Gaps = 0/522 (0%)
 Strand=Plus/Plus

Query  1    AATGGCAAAGAATTCTTATGCACTGTCTGGCCTAATTGTGGCCTTAGTCATCGCACTGGT  60
            ||||||||||||||||||||||||||||||  ||||||||||| ||||||||||| ||||
Sbjct  99   AATGGCAAAGAATTCTTATGCACTGTCTGGGTTAATTGTGGCCCTAGTCATCGCATTGGT  158

Query  61   ATGCAACATCCATGATGCTGCAGCAAGAGACGTGAAGCTAGTGAAGCTCCGCGATGTAAA  120
            |||||||||  |||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct  159  ATGCAACATTGATGACGCTGCAGCGAGAGACGTGAAGCTAGTGAAGCTCCGCGATGTAAA  218

Query  121  ACCCGAAACTTTGAAGAAGTTGAACGGAGAGAAAGAAAGTGAAATCATGAAAGGAGAGGA  180
            ||||||||||||||| |||||||| ||||| |||||||||||| ||||| ||| ||||||
Sbjct  219  ACCCGAAACTTTGAACAAGTTGAAAGGAGAAAAAGAAAGTGAACTCATGCAAGCAGAGGA  278

Query  181  GAAAAACAATCTTCTAAAGGAAATTGAGAAGGCTAAGAAAATGCTCGGAGAATTGAAAAC  240
            ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct  279  GAAAAACAATCTTCTAAAGGAAATTGAGAAGGCAAAGAAATTGCTCGGAGAATTGAAAAC  338

Query  241  GTTGAAGAAGCAATCAACTGGTGATATGAAAAGCGAATTGAGTTCTTTGGTGAAATCTGA  300
            ||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct  339  GTTAAAGAAGCAATCAACTGGTGATATGAAAAGCGAATTGAAATCTTTGGTGAAATCTGA  398

Query  301  ATCGTTACTTAATGAAATTTCAGATTCTCTCAAGAATGGAACGTACAACCATATTAAAGC  360
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  399  ATCGTTACTTAATGAAATTTCAGATTCTCTGAAGAATGGAACGTACAACCATATTAAAGC  458

Query  361  AAACATTTTTGTTGAAAAAGAATCATTTTTCTACAGAGCATGGAAGGAGAATGCCTATAA  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  459  AAACATTTTTGTTGAAAAAGAATCATTTTTCTACAGAGCATGGAAGGAGAATGCCTATAA  518

Query  421  TTCGGTGGTTCCGGAGAAAGAGAAAGAGTATATGTCTACCATAAAACGCATTGTCAAGTT  480
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TTCGGTGGTTCCGGAGAAGGAGAAAGAGTATATGTCTACCATAAAACGCATTGTCAAGTT  578

Query  481  GTTGAAGAAAACTTAGAAGAAGAATCGGTAAATTCATGATAT  522
            | ||||||||||||||||||||||||||| | ||||||||||
Sbjct  579  GGTGAAGAAAACTTAGAAGAAGAATCGGTTACTTCATGATAT  620



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31547044316


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5