BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg477404

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G01240.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   793    0.0  


> AT3G01240.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant 
structures; EXPRESSED DURING: L mature pollen stage, M germinated 
pollen stage, 4 anthesis, C globular stage, petal differentiation 
and expansion stage; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G01230.1); Has 12 
Blast hits to 12 proteins in 3 species: Archae - 0; Bacteria 
- 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other 
Eukaryotes - 1 (source: NCBI BLink). | chr3:78376-79037 REVERSE 
LENGTH=662
Length=662

 Score =  793 bits (429),  Expect = 0.0
 Identities = 490/519 (94%), Gaps = 5/519 (1%)
 Strand=Plus/Plus

Query  1    ATCTCTTCTCACCTCTTTTCCTTTGACAAACTATTTGAATCTAAATTCAAATTGATTTGT  60
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  15   ATCTCTTCTCACCTCTTTTCCTTTAACAAACTATTTGAATCTAAATTCAAATTGATTTGT  74

Query  61   TAAGGGAAAATTGAGCTAGAAAAATCATGGCAAAGATCTCCTTCGTGCTTTTCGTTGTGG  120
            |||||||||  ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct  75   TAAGGGAAACCTGAGCTAGAAAAACCATGGCAAAGATCTCCTTCGTACTTTTCGTTGTGG  134

Query  121  CCCTTATCGCCTTTCTCCATGCTTATGAAGCTCGCAAAGTGGTAAATGTCGGTGAAGCAT  180
            ||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||
Sbjct  135  CCCTTATCGCCTTTCTCCACGCTTATGAAGCTCGCAAAGTAGTAAATCTCGGTGAAGCAT  194

Query  181  TTGAAAAAGACTTGCAGAAAGCCGAGGCCATGATCGCGGAAGAAGTAAAGGCCAAGAAAA  240
            ||||||||||||| || ||||||||||||||||||||||||||| ||||||| |||||||
Sbjct  195  TTGAAAAAGACTTACATAAAGCCGAGGCCATGATCGCGGAAGAATTAAAGGCTAAGAAAA  254

Query  241  CGAACATTCAAGGTTTGACATCAGAGGTGAAAACGTTGAGCAAATCTGAAGTGATGTTGA  300
            |||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||
Sbjct  255  CGAACATTCAAGGTTTGAAATCTGAGGTGAAAACGTTGAGCAAATCAGAAGTGATGTTGA  314

Query  301  AGGACCTTGGAAATGCTTACAAGAAAGATATGGACTTAAGGCCTTACGAAAAGAAACTCA  360
            |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  315  AGGAACTTGGAAATGCTTACAAGAAGGATATGGACTTAAGGCCTTACGAAAAGAAACTCA  374

Query  361  AAAACTTCAGCAGGGTTGTAGCCCTCAAGAAAGCACCTGTG--AAA-AACAACAAGAAGC  417
            |||||||||||||| | ||||||||||||||||||||| ||  ||| ||||||||||| |
Sbjct  375  AAAACTTCAGCAGGATCGTAGCCCTCAAGAAAGCACCTATGAAAAACAACAACAAGAAAC  434

Query  418  CTGTATCCATAATCCAATCGATTTTGAAGGACTTCGGATTAAACGGAGGGAGGGACTGAC  477
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  435  CTGTATCCATAATCCAATCGATTTTGAAGGACTTCGGATTAAACGGAGGGAGGAACTGAC  494

Query  478  aaaaaaaaCTATTAATATTTAGGGTATGATTAATGTTTT  516
            ||||||  ||||||||| ||||||| |||||||||||||
Sbjct  495  AAAAAA--CTATTAATAATTAGGGTGTGATTAATGTTTT  531



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24664966177


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5