BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477407
Length=886
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01210.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1349 0.0
> AT3G01210.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:71626-73220 FORWARD LENGTH=1032
Length=1032
Score = 1349 bits (730), Expect = 0.0
Identities = 840/892 (94%), Gaps = 12/892 (1%)
Strand=Plus/Plus
Query 1 CTCTTTCTCTCTCACAATCACACGAATCTTGTGTTC-TTTCTTCTCCGTCTCTTTCGATA 59
|||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||
Sbjct 82 CTCTTTCTCTCTCACAATCACACGAATCTTGTCTTCTTTTC-TCTCCGTCTCTTTCGATA 140
Query 60 CTTTGCTTCAATCTTCTGACTTTCCTGTTCTATTATACCTTAATCGGGTATTTAGGTTTG 119
||| ||||||||| | |||| |||||||||||| | |||||||||||||| |||||| |
Sbjct 141 CTTGGCTTCAATCCTGTGAC-GTCCTGTTCTATTGTGCCTTAATCGGGTATCTAGGTTCG 199
Query 120 TGTGAGAAAACAGAAC-----AATGTATCCTTGTGGTTATGTTGCTCAAGTCACCAACTT 174
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 200 TGTGAGAAAACAGAACAATATAATGTATCCTTGTGGTTACGTTGCTCAAGTCACCAACTT 259
Query 175 GTCTCCTCAAGCCACTGAGAAAGATGTTCATAGGTTCTTCTCTCACTGTGGTATCGTCGA 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 GTCTCCTCAAGCCACTGAGAAAGATGTTCATAGGTTCTTCTCTCACTGTGGTATCGTCGA 319
Query 235 GCTCGTTGAAATCACCGGGTGCGAAGGGGATGCTTTAACGGCTTATGTAACCTTCAGAGA 294
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 320 GCTCGTTGAAATCACCGGGTGCCAAGGGGATGCATTAACGGCTTATGTAACCTTCAGAGA 379
Query 295 TGCGTATGCTCTAGATATGGCCGTGTTGCTTAGCGGAGCTACCATCGTTGATCAAACCGT 354
|||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 380 TGCGTATGCTCTGGATATGGCTGTGTTACTTAGCGGAGCTACGATCGTTGATCAAACCGT 439
Query 355 TTGGATATCGGTGTACGGTGTCTATTTACACGAATCTAACAGTCTCAGACAAGAAGAAGA 414
|||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 440 TTGGATATCGGTCTACGGTGTCTATTTACATGAATCTAACAATCTCAGACAAGAAGAAGA 499
Query 415 TTATAGTGTAACGGCGACTCGTTCAGACGCGTTCGCTTCATCCCCTGGAGAAGC-AGTAA 473
|||||||| |||| |||||||||||||||||| |||||||| |||||||| || | |||
Sbjct 500 CTATAGTGTTACGGTGACTCGTTCAGACGCGTTTGCTTCATCGCCTGGAGAGGCCA-TAA 558
Query 474 CCGTGGCTCAACAAGTTGTAAAGACGATGTTAGCTAAAGGCTATGTTTTAAGCAAAGACG 533
||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 559 CCGTGGCTCAACAAGTTGTGCAGACGATGTTAGCTAAAGGCTACGTTTTAAGCAAAGACG 618
Query 534 CAATCGGTAAAGCCAAAGCTTTGGATGAGTCTCAGAGATTCTCAAGCTTGGTAGCGACCA 593
| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 619 CGATTGGTAAAGCCAAAGCTTTGGATGAGTCTCAGAGATTTTCAAGCTTGGTAGCGACCA 678
Query 594 AATTGGCAGAGATCAGCCATTACCTTGGCCTCACACAGAACATTCAGTCGAGTATGGAAG 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 AATTGGCAGAGATCAGCCATTACCTTGGCCTCACACAGAACATTCAGTCGAGTATGGAAC 738
Query 654 TCGTGAGATCAGCGGACGAGAAGTATCATTTCTCGGATTTCACAAAATCCGCGGTTCTTG 713
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 739 TCGTGAGATCAGCGGACGAGAAGTATCATTTCTCGGATTTCACTAAATCCGCGGTTCTTG 798
Query 714 TCACGGGAACGGCTGCTGTGGCCGCAGCCACCATTACAGGGAAAGTGGCTGCAGCTGCAG 773
||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 799 TCACGGGCACAGCTGCTGTAGCCGCAGCCACCATTACAGGGAAAGTGGCTGCAGCTGCAG 858
Query 774 CTACTAGTGTGGTCAACAGTCGATACTTTGCTAATGGGGCTTTATGGTTCTCAGATGCTT 833
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 859 CGACTAGTGTGGTCAACAGTCGTTACTTTGCTAATGGGGCTTTATGGTTCTCAGATGCTT 918
Query 834 TGGGCCGGGCTGCTAAAGCAGCGGCCCATAT-GGCTGGAGGAGGAAGCGATT 884
||||||||||||| ||||||||||||||||| || ||||||||||||| |||
Sbjct 919 TGGGCCGGGCTGCAAAAGCAGCGGCCCATATCGG-TGGAGGAGGAAGCAATT 969
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43251600567
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5