BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477409
Length=1415
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01200.1 | Symbols: AtRP2, RP2 | PPDK regulatory protein 2 |... 1986 0.0
AT3G01202.1 | Symbols: | other RNA | chr3:69854-71415 FORWARD ... 747 0.0
> AT3G01200.1 | Symbols: AtRP2, RP2 | PPDK regulatory protein 2
| chr3:69511-71362 REVERSE LENGTH=1463
Length=1463
Score = 1986 bits (1075), Expect = 0.0
Identities = 1312/1423 (92%), Gaps = 30/1423 (2%)
Strand=Plus/Plus
Query 1 ATGAATCTAGACGGCGTCTCATCAGGCCATCTCGAGGCTAGTTCCGAACCTCCAATTCCG 60
|||||| || |||||| || || ||||||| |||| ||| |||||||||||||||||||
Sbjct 15 ATGAATTTACACGGCG--TC-TCGGGCCATCACGAGCCTAATTCCGAACCTCCAATTCCG 71
Query 61 ACAGGTTCGTCGAGTCCGAAGCTGAAGATTAGTCCCAAATTGAATCGCTGGTCTATGGGC 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 72 ACAGGTTCGTCGAGTCCGAAGCTGAAGATTAGTCCCAAATTGAATCGGTGGTCTAGGGGC 131
Query 121 CGAACTTTAAGATCTGGTGGTAAGCTCGACCGTCCAATTCACCGTTCCGATGACACACAT 180
||| ||||||||||||||| |||||| ||||||||||||| |||||||||| || ||| |
Sbjct 132 CGAGCTTTAAGATCTGGTGTTAAGCTTGACCGTCCAATTCCCCGTTCCGATAACTCACCT 191
Query 181 CGCCGTCAAGTAACGGAAGCGAAACAGACGGAGGAGGCTGGTAAGAAGACGTCGGCGATT 240
|||||||||||||||||||| ||| ||| || ||||||| |||||||||| |||||||
Sbjct 192 CGCCGTCAAGTAACGGAAGCCCAACCGACCGATGAGGCTGATAAGAAGACGACGGCGATC 251
Query 241 GACGTTGAGATAACGGCAGGAAAGTCTATATATTTGGTTTCCGACGGGACAGGGTGGACG 300
||||| ||| ||||||| ||||||||||||||||||||||||||||| || |||||||||
Sbjct 252 GACGTGGAGGTAACGGCGGGAAAGTCTATATATTTGGTTTCCGACGGAACTGGGTGGACG 311
Query 301 GCAGAGCACTCCGTTAACGCCGCTTTGGGACAATTCGAAGATTTCTCGTTGAATCGTGGG 360
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 312 GCAGAGCATTCCGTTAACGCCGCTTTGGGACAATTCGAAGATTTTTCGTTGAATCGTGGC 371
Query 361 TCTTCTGTAAATACCCATCTCTTCTCTTGGGTTGAGGATGAGGAGAGGCTTATAGAGATT 420
|||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 372 TCTTCTGTGAATACCCATCTCTTCTCCTGGGTTGAGGATGAGGAGAGGCTTATCGAGATT 431
Query 421 ATCAAGCAGGCGGCAAAGGAAGGGGCAATGTGTTTCTACACTTTAGCTAATCCTTCTATG 480
|| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 432 ATTAAGCAAGCGGCAAAGGAAGGGGCAATGTGTTTCTACACTTTAGCAAATCCTTCTATG 491
Query 481 GCAAAATCCGCAAAACAAGCTTGCGATCAATGGGGTGTGCTTTCGGTCGATATTCTAGGA 540
|||||||||||||| |||||||| ||||| | ||||||||||||||| ||||||||||||
Sbjct 492 GCAAAATCCGCAAAGCAAGCTTGTGATCAGTTGGGTGTGCTTTCGGTTGATATTCTAGGA 551
Query 541 CCAATCATCGAAGGGATTGCGTCTCACTTAGGTGTTTCTCCATCAGGTCTTACTCGTGGG 600
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 552 CCAATCATCGAAGGGATTGCGTCTCACTTAGGTGTTTCTCCGTCAGGTCTTACACGTGGA 611
Query 601 GCCCCTGGTAGGGTCAAGACTCTCAATGATGCCTATTTCAAAAGGATCGAAGCCATTGAG 660
|| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 612 GCACCTGGTAGGGTCAAGACTCTCAATGATGCATATTTCAAAAGGATTGAAGCCATTGAG 671
Query 661 TTTACCATTAAGCAAGATGATGGGACTTTACCCGAGAACTTAAGCAAGGCTGATATAGTT 720
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 672 TTTACCATTAAGCAAGATGATGGGACTTTACCTGAGAACTTAAGCAAGGCTGATATAGTT 731
Query 721 CTAGTCGGGGTTTCCCGCACAGGGAAGACGCCATTGTCCACTTACATTGCTCAAAAAGGG 780
|| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 732 CTTGTCGGGGTTTCCCGGACAGGGAAGACGCCCTTGTCCACTTACATTGCTCAAAAAGGG 791
Query 781 TACAAAGTTGCCAATGTACCGTTTGTCATGGGCGTGGAACCACCCAGGACGCTCTTTGAG 840
||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||| ||
Sbjct 792 TACAAAGTTGCTAATGTGCCGTTTGTGATGGGCGTGGAACCACCCAGGACGCTCTTTCAG 851
Query 841 GTTGAACCGAGAAAGGTTTTCGGTTTGAAGATTCAGCTGGTTGTACTGCAAGCGATTAGG 900
|||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 852 GTTGAACCGAGAAAAGTTTTTGGTTTGAAGATCCAGCTCGTTGTACTGCAAGCGATTAGA 911
Query 901 AGAACAAGGGCTAAAACTTTAGGCGTAGATACGGAGGCAGAGAACAATTACTCGGGGATC 960
|||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 912 AGAACAAGGGTTAAAACGCTAGGCGTAGATACAGAGGCAGAGAACAATTACTCGGGGATT 971
Query 961 GATCTTGTTCGGAAAGAACTGGATTTCGCGTCAAGGATCTATGCGGC-AAACCCCGGATG 1019
|||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||
Sbjct 972 GATCTTGTTCGGAAAGAACTAGATTTCGCGTCAAGGATCTATG-AGCGAAACCCCGGATG 1030
Query 1020 GGCAGTGATAGATGTGACTAATAAGGCGATTGAAGAAACCGCGGCTGTGATTCTGCGGCT 1079
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 GGCAGTGATAGATGTGACGAATAAGGCGATTGAAGAAACCGCGGCTGTGATTCTGCGGCT 1090
Query 1080 GTACCATGACGGTAGAGACACTAGTACTACGGTACCGCGTATCTCAAAACGCTACTAAGC 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 GTACCATGACGGTAGAGACACTAGTACTACGGTACCGCGTATCTCAAAACGCTACTAAGC 1150
Query 1140 AAGCACACTCCTTTGACCGTAGAG-G-AGGAAACAACAGTTTGGataaagtattaagtga 1197
| ||| |||||||||||||||| | | |||||| |||| | |||||||||| ||||||
Sbjct 1151 A--CAC--TCCTTTGACCGTAGAGAGGATGAAACACCAGTGTCGATAAAGTATCAAGTGA 1206
Query 1198 ataaagtaat-tgatctctataataataa-taataagttaataaCAAGTCCAACCGAGGC 1255
|||||||||| | || ||||||||||||| | | | |||||||| ||||||||||||
Sbjct 1207 ATAAAGTAATAT-ATGTCTATAATAATAAGT--T--G--AATAACAAATCCAACCGAGGC 1259
Query 1256 ATGA--A-TCATATGTTTTAGTCAACGAATGTAAGAGGATGAAGGATAACAAAAACTAAT 1312
|||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1260 ATGATGAATCATATGTTTTAGTCAACGAATGTAAGAGGATGAAGGATAACGAAAACTAAT 1319
Query 1313 AATTGTGGTGGCTACTCTGAATTCTTTTAGTACTAGTCTATATATAAAACAAAATAATAA 1372
|||||||| |||||||||||||||||| |||||||||||| | || ||||| ||||
Sbjct 1320 AATTGTGG---CTACTCTGAATTCTTTTATTACTAGTCTATA-A-AA--CAAAAGAATAT 1372
Query 1373 CTGTCATTAGCATTTAGTTGAAACGTTGCAATTTGGGTGTGTT 1415
|||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1373 CTGTCATTAGCATTTAGTTGCAACGTTGCAATTTGGGTGTGTT 1415
> AT3G01202.1 | Symbols: | other RNA | chr3:69854-71415 FORWARD
LENGTH=1248
Length=1248
Score = 747 bits (404), Expect = 0.0
Identities = 559/630 (89%), Gaps = 26/630 (4%)
Strand=Plus/Minus
Query 1 ATGAATCTAGACGGCGTCTCATCAGGCCATCTCGAGGCTAGTTCCGAACCTCCAATTCCG 60
|||||| || |||||| || || ||||||| |||| ||| |||||||||||||||||||
Sbjct 1181 ATGAATTTACACGGCG--TC-TCGGGCCATCACGAGCCTAATTCCGAACCTCCAATTCCG 1125
Query 61 ACAGGTTCGTCGAGTCCGAAGCTGAAGATTAGTCCCAAATTGAATCGCTGGTCTATGGGC 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1124 ACAGGTTCGTCGAGTCCGAAGCTGAAGATTAGTCCCAAATTGAATCGGTGGTCTAGGGGC 1065
Query 121 CGAACTTTAAGATCTGGTGGTAAGCTCGACCGTCCAATTCACCGTTCCGATGACACACAT 180
||| ||||||||||||||| |||||| ||||||||||||| |||||||||| || ||| |
Sbjct 1064 CGAGCTTTAAGATCTGGTGTTAAGCTTGACCGTCCAATTCCCCGTTCCGATAACTCACCT 1005
Query 181 CGCCGTCAAGTAACGGAAGCGAAACAGACGGAGGAGGCTGGTAAGAAGACGTCGGCGATT 240
|||||||||||||||||||| ||| ||| || ||||||| |||||||||| |||||||
Sbjct 1004 CGCCGTCAAGTAACGGAAGCCCAACCGACCGATGAGGCTGATAAGAAGACGACGGCGATC 945
Query 241 GACGTTGAGATAACGGCAGGAAAGTCTATATATTTGGTTTCCGACGGGACAGGGTGGACG 300
||||| ||| ||||||| ||||||||||||||||||||||||||||| || |||||||||
Sbjct 944 GACGTGGAGGTAACGGCGGGAAAGTCTATATATTTGGTTTCCGACGGAACTGGGTGGACG 885
Query 301 GCAGAGCACTCCGTTAACGCCGCTTTGGGACAATTCGAAGATTTCTCGTTGAATCGTGGG 360
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 884 GCAGAGCATTCCGTTAACGCCGCTTTGGGACAATTCGAAGATTTTTCGTTGAATCGTGGC 825
Query 361 TCTTCTGTAAATACCCATCTCTTCTCTT-GG----G--TTG---A--G----G----A-- 398
|||||||| ||||||||||||||||||| || | ||| | | | |
Sbjct 824 TCTTCTGTGAATACCCATCTCTTCTCTTTGGTTTTGGGTTGGGGATTGATCAGGTTGAGG 765
Query 399 -TGAGGAGAGGCTTATAGAGATTATCAAGCAGGCGGCAAAGGAAGGGGCAATGTGTTTCT 457
||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 764 ATGAGGAGAGGCTTATCGAGATTATTAAGCAAGCGGCAAAGGAAGGGGCAATGTGTTTCT 705
Query 458 ACACTTTAGCTAATCCTTCTATGGCAAAATCCGCAAAACAAGCTTGCGATCAATGGGGTG 517
|||||||||| |||||||||||||||||||||||||| |||||||| ||||| | |||||
Sbjct 704 ACACTTTAGCAAATCCTTCTATGGCAAAATCCGCAAAGCAAGCTTGTGATCAGTTGGGTG 645
Query 518 TGCTTTCGGTCGATATTCTAGGACCAATCATCGAAGGGATTGCGTCTCACTTAGGTGTTT 577
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 TGCTTTCGGTTGATATTCTAGGACCAATCATCGAAGGGATTGCGTCTCACTTAGGTGTTT 585
Query 578 CTCCATCAGGTCTTACTCGTGGGGCCCCTG 607
|||| ||||||||||| ||||| || ||||
Sbjct 584 CTCCGTCAGGTCTTACACGTGGAGCACCTG 555
Score = 508 bits (275), Expect = 4e-143
Identities = 320/342 (94%), Gaps = 2/342 (1%)
Strand=Plus/Minus
Query 690 ACCCGAGAACTTAAGCAAGGCTGATATAGTTCTAGTCGGGGTTTCCCGCACAGGGAAGAC 749
||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 559 ACCTGAGAACTTAAGCAAGGCTGATATAGTTCTTGTCGGGGTTTCCCGGACAGGGAAGAC 500
Query 750 GCCATTGTCCACTTACATTGCTCAAAAAGGGTACAAAGTTGCCAATGTACCGTTTGTCAT 809
||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 499 GCCCTTGTCCACTTACATTGCTCAAAAAGGGTACAAAGTTGCTAATGTGCCGTTTGTGAT 440
Query 810 GGGCGTGGAACCACCCAGGACGCTCTTTGAGGTTGAACCGAGAAAGGTTTTCGGTTTGAA 869
|||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||
Sbjct 439 GGGCGTGGAACCACCCAGGACGCTCTTTCAGGTTGAACCGAGAAAAGTTTTTGGTTTGAA 380
Query 870 GATTCAGCTGGTTGTACTGCAAGCGATTAGGAGAACAAGGGCTAAAACTTTAGGCGTAGA 929
||| ||||| |||||||||||||||||||| |||||||||| |||||| ||||||||||
Sbjct 379 GATCCAGCTCGTTGTACTGCAAGCGATTAGAAGAACAAGGGTTAAAACGCTAGGCGTAGA 320
Query 930 TACGGAGGCAGAGAACAATTACTCGGGGATCGATCTTGTTCGGAAAGAACTGGATTTCGC 989
||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 319 TACAGAGGCAGAGAACAATTACTCGGGGATTGATCTTGTTCGGAAAGAACTAGATTTCGC 260
Query 990 GTCAAGGATCTATGCG-GCAAACCCCGGATGGGCAGTGATAG 1030
|||||||||||||| | | |||||||||||||||||||||||
Sbjct 259 GTCAAGGATCTATGAGCG-AAACCCCGGATGGGCAGTGATAG 219
Score = 145 bits (78), Expect = 1e-33
Identities = 80/81 (99%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 1029 AGATGTGACTAATAAGGCGATTGAAGAAACCGCGGCTGTGATTCTGCGGCTGTACCATGA 1088
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 AGATGTGACGAATAAGGCGATTGAAGAAACCGCGGCTGTGATTCTGCGGCTGTACCATGA 22
Query 1089 CGGTAGAGACACTAGTACTAC 1109
|||||||||||||||||||||
Sbjct 21 CGGTAGAGACACTAGTACTAC 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69728557005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5