BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477412
Length=1193
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01175.1 | Symbols: | Protein of unknown function (DUF1666)... 1528 0.0
> AT3G01175.1 | Symbols: | Protein of unknown function (DUF1666)
| chr3:59471-60845 FORWARD LENGTH=1219
Length=1219
Score = 1528 bits (827), Expect = 0.0
Identities = 1106/1232 (90%), Gaps = 54/1232 (4%)
Strand=Plus/Plus
Query 1 TCTCTGAAATTTGATGGCGGTACTCTCAGCATGTTGGCTAATGATAGAATCCTTAGTGAT 60
|||| || |||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1 TCTCAGACATTTGATGGCTTTACTCTCAGCATGTTGGCTAATGATAGAATCCATAGTGAT 60
Query 61 TCAAGATGGTTTCTTGAAATTATCTTACATGAAATTATACATGCACCCTCTTGTTCTCTT 120
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCAAGATGGTTTCTTGAAATCGTCTTACATGAAATTATACATGCACCCTCTTGTTCTCTT 120
Query 121 TCTTTGCCAACTTCTTATATGGCTCTATCTCTTCTTTTTATGGCTTCTCACACCCTTTCA 180
|||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 121 TCTTTGTCAACTTCTTATATGGCTTTATCTCTTCTTTTTATGGCTTCTCCCACCCTTTCA 180
Query 181 GGCGT-TTTACAACACCTTTTCATCGGTCTTGGTCACTTTCTCTAAGCTAGTTAGTAGTT 239
|| | |||||||| ||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 181 AGC-TCTTTACAACGCCTTTTCATCGGTCTTGTTCACGTTCTCTAAGCTAGTTAGTAGTT 239
Query 240 -TTCTCCGAGTCATTATGGTTAGAAAGGAGGTTACATGT-AGTGTTGAGTCTAGGCAAGA 297
|| |||||||||||||| ||| |||||||||||| ||| | | ||||||||||||||||
Sbjct 240 CTT-TCCGAGTCATTATGTTTAAAAAGGAGGTTACTTGTCA-TATTGAGTCTAGGCAAGA 297
Query 298 GATCAAGAATACCCTTGATAACTTGGAACTTTCTAGAAATACTCATAACCCGGTTCCTGC 357
|||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||
Sbjct 298 GATCAAGAATACCCTTGATAACTTGGAACTCTCTACAAGTACTCATAACCCGGTTCCTGC 357
Query 358 CTTTAGCTTTTCGTTTAAATATCAAGTGGATAGTCAACTAAAAGTTCGGT-TATCTCTGC 416
||||||||||||||||||||||||||||||||||| ||||||||| || ||||| |||
Sbjct 358 ATTTAGCTTTTCGTTTAAATATCAAGTGGATAGTCATTTAAAAGTTC-GTATATCTATGC 416
Query 417 AAAAAGGCAAGATTCTT---GAAGAAGAAGATGTTGATGATTGTTTCTATGAATTTGATG 473
||||||||||||||||| |||||||||||||| ||||||| ||||||||||| ||||
Sbjct 417 AAAAAGGCAAGATTCTTGAAGAAGAAGAAGATGTGGATGATTTTTTCTATGAATATGATC 476
Query 474 AAGAAGATGTTGGTGAGCTTCTTGATGCTAAAGAGGGCGAGGAGGAAGAAGACATTGACA 533
|||||||||||| |||||||||||||||||| |||| ||||||||| | ||| ||||||
Sbjct 477 AAGAAGATGTTGTTGAGCTTCTTGATGCTAAGGAGGTTGAGGAGGAACACGACGTTGACA 536
Query 534 TTGTTGATGCTGTAAACATGGAGAAGAATCTTGGGTTCGAAATTCAGACTATGCCAATAC 593
|| |||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 537 TTTTTGATGGTGTAAACATGGAGAAGAATCTTGAGTTCGAAATTCAAACTATGCCAATAC 596
Query 594 ATCAAGAAGATGAAAATTCATTAGCCGATGATAACGAAGAAGAACAAGAGGAGATTGTAA 653
|||||||||||||| ||| ||| || | ||| ||||||||| |||| | |||||||
Sbjct 597 ATCAAGAAGATGAAGCTTCTTTAACCAACGATGACGAAGAAG---AAGA--A-ATTGTAA 650
Query 654 ACTCAGACGTGGAGAATGATCTATCTTCTCTAGTATCTAGCGATAGAGAGCATTCCTCGC 713
||||||||||||||||||||||||||| |||||| |||||| | ||||| ||| ||||||
Sbjct 651 ACTCAGACGTGGAGAATGATCTATCTTTTCTAGTTTCTAGCAAAAGAGATCATCCCTCGC 710
Query 714 CTTTATCTATTGCAAGCTTGGATTCAGCGCTCCAAGATTCGGTTGTGATAGAGAATGT-- 771
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 711 CTTTATCTATTGCAAGCTTGGATTCAGCGCTCCAAGATTCGGTTACGATAGAGAATATTC 770
Query 772 ATACA-A-G-A-T--A---T-AC--TG----C--GAAA----G-GAT-GA--GA--TGGT 803
| ||| | | | | | | || || | |||| | || || || ||||
Sbjct 771 AAACACAAGGAGTTGAAGATGACCATGTATACAAGAAATATTGCGAAAGAATGAGATGGT 830
Query 804 ATGACATCCTCAGCCGCGATAGAAGCTATGGACTAGGTGTGATCACAAACCAACTAACGG 863
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 831 ATGACATCCTCAGCCGCGATAGAAGCTATGGACTAAATGTGATCACAAACCAACTAACGG 890
Query 864 CAAGTAGTTTGAGCTTATGGGG-AAAACCGGCAGAGAAGAGGATAAAACAAAGCATGACG 922
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 891 CAAGTAGTTTGAGCTTATGGGGGAAAAC-GGCAGAGAAGAGGATAAAACAAAGCATGAAG 949
Query 923 AAGGACCTTGAGCTAGTCTATGTTGCTCAA-TCGTGCTTGTCATGGGAAGCTCTTCAGCA 981
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 950 AAGGACCTTGAGCTAGTCTATGTTGCTCAAGT-GTGCTTGTCATGGGAAGCTCTTCAGCA 1008
Query 982 TCAGTACATTACAGTGAGAGATAGTTCGAACCTCGCTGATTCGAGAGGCAGGTTCTATGA 1041
|||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1009 TCAGTACATTTTAGTGAGAGATAGTTCGAACCCCGCTGATTCGAGAGGCAGGTTCGATGA 1068
Query 1042 CGATGATATCTCCAGAGAGTTTCAGAACTTTCAGGTTTTGTTAGAAAGGTTCTTGGAAGA 1101
||| |||||| ||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1069 TGAT-ATATCT--AGAGAGTTTCAGAACTTTCAGGTCTTGTTAGAGAGGTTCTTGGAAGA 1125
Query 1102 TGAGAGATGTGAAGGAAAACGAGTCTTGAGCTTTGTTCAAAGAAGATTTGAGTTGATAAG 1161
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1126 TGAGAGGTGTGAAGGAAAACGAGTCTTGAGCTTTGTTCAAAGAAGATTTGAGTTGATTAG 1185
Query 1162 CTTCTTACAAGTCCCAAGACTTTCAGGTAAAT 1193
|||||| ||||||||||||||||| |||||||
Sbjct 1186 CTTCTTTCAAGTCCCAAGACTTTCGGGTAAAT 1217
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58584036015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5