BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477418
Length=2527
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01100.1 | Symbols: HYP1, ATHYP1 | hypothetical protein 1 | ... 3880 0.0
> AT3G01100.1 | Symbols: HYP1, ATHYP1 | hypothetical protein 1
| chr3:34719-38529 REVERSE LENGTH=2561
Length=2561
Score = 3880 bits (2101), Expect = 0.0
Identities = 2420/2566 (94%), Gaps = 54/2566 (2%)
Strand=Plus/Plus
Query 3 AATGGAAAAATCGAGAAAAATGGTATCGTGTCGCTTTAAGGACTTATTTATGTATATGGC 62
|||||||||||||||||||||||||||||||||| | |||||||| ||| | ||||||
Sbjct 5 AATGGAAAAATCGAGAAAAATGGTATCGTGTCGCATCGAGGACTTA-TTACG--TATGGC 61
Query 63 CAGAGAGCTCAAA-C-GAAGATCACCGCCTCGACTGATTCGTCGTTTCTCTTGATTCTTG 120
|||||||||||| | ||||||||||||||||||||||| || |||||| |||||||||
Sbjct 62 GAGAGAGCTCAAACCAAAAGATCACCGCCTCGACTGATTCATCTTTTCTCCTGATTCTTG 121
Query 121 GCAGACTTCTCTTGGTCTAACTGAATTTAGAGTTATGCTTCTGTCAGCACTTTTAACTTC 180
|||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 122 GCAGGCTTCTCTTGGTCTAAGTGAATTTGGAGTTATGCTTCTGTCAGCACTTTTAACTTC 181
Query 181 AGTGGGAATCAATCTTGGCCTCTGTTTTCTCTTCTTCACTTTGTATTCAATATTGAGAAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 AGTGGGAATCAATCTTGGCCTCTGTTTTCTCTTCTTCACTTTGTATTCAATATTGAGAAA 241
Query 241 GCAGCCTAGCAATGTCACTGTATACGGTCCACGGCTTGTT---AAAGACGGCAAATCTCA 297
||||||||| ||||||||||||||||||||||| |||||| ||||| ||||| |||||
Sbjct 242 GCAGCCTAGTAATGTCACTGTATACGGTCCACGTCTTGTTAAAAAAGATGGCAAGTCTCA 301
Query 298 GCAGTCAAATGAGTTCAACCTCGAGAGGCTTTTGCCTACTGCTGGTTGGGTCAAAAGAGC 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 GCAGTCAAATGAGTTCAACCTCGAGAGGCTTTTGCCTACTGCTGGTTGGGTCAAAAGAGC 361
Query 358 ATTGGAACCTACCAATGATGAAATTCTCTCCAATCTTGGCTTAGATGCTTTGGTCTTCAT 417
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 362 ATTGGAACCTACCAATGATGAAATCCTCTCCAATCTTGGCTTAGATGCTTTGGTCTTCAT 421
Query 418 TCGTGTCTTTGTCTTCAGTATACGAGTGTTTAGCTTTGCTTCTGTGGTTGGGATCTTTAT 477
|||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||| ||
Sbjct 422 TCGTGTCTTTGTCTTCAGCATAAGAGTGTTTAGCTTTGCATCTGTGGTTGGGATCTTCAT 481
Query 478 ACTTCTTCCTGTGAATTATATGGGCACCGAGTTTGAGGAGTTTTTCGACCTGCCAAAGAA 537
||||||||| |||||||||||||| || |||||||| |||||||||||||| ||||||||
Sbjct 482 ACTTCTTCCAGTGAATTATATGGGAACAGAGTTTGAAGAGTTTTTCGACCTCCCAAAGAA 541
Query 538 GTCTATGGATAACTTCAGTATTTCTAATGTTAACGATGGATCAAATAAGCTGTGGATCCA 597
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 542 GTCTATGGATAACTTCAGTATCTCTAATGTTAACGATGGATCAAATAAGCTGTGGATCCA 601
Query 598 CTTTTGCGCAATATACATCTTCACGGCAGTTGTTTGCTCTCTACTTTACTATGAGCACAA 657
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 602 CTTTTGCGCAATATACATCTTCACGGCGGTTGTTTGTTCTCTACTTTACTATGAGCACAA 661
Query 658 GTACATTTTAACAAAGCGGATTGCTCATCTTTATTCATCCAAGCCTCAGCCACAAGAATT 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 GTACATTTTAACAAAGCGGATTGCTCATCTTTATTCATCCAAGCCTCAGCCACAAGAATT 721
Query 718 TACAGTTCTGGTCAGTGGCGTCCCTCTTGTATCTGGGAACACTATTAGTGAGACAGTAGA 777
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 722 TACAGTTCTGGTCAGTGGCGTCCCTCTTGTATCCGGGAACAGTATTAGTGAGACAGTAGA 781
Query 778 AAACTTTTTCAGGGAATATCATTCTTCCTCGTATCTTTCTCATATAGTTGTTCATCGGAC 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 AAACTTTTTCAGGGAATATCATTCTTCCTCGTATCTTTCTCATATAGTTGTTCATCGGAC 841
Query 838 AGACAAGTTAAAAGTTCTCATGAATGATGCTGAGAAGCTGTACAAGAAGCTTACACGAGC 897
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 AGACAAGTTGAAAGTTCTCATGAATGATGCTGAGAAGCTGTACAAGAAGCTTACACGAGT 901
Query 898 AAAATCCGGAAGCATATCTCGCCAGAATTCTAGGCGGGTTGGGTTTTTAGGGATGTTTGG 957
|||||||||||||||||||||||| || |||||| ||| ||||||| |||||||||||||
Sbjct 902 AAAATCCGGAAGCATATCTCGCCAAAAGTCTAGGTGGGGTGGGTTTCTAGGGATGTTTGG 961
Query 958 GAAT-A-----A--T-GTTGACCATTACCAAAAGAAGCTTGAGAAGTTAGAAGATGACAT 1008
|||| | | | |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 962 GAATAATGTTGATGTGGTTGACCATTACCAAAAGAAGCTTGATAAGTTAGAAGATGACAT 1021
Query 1009 GAGATTGAAACAGTCTTTATTAGCAGGAGAGGAAGTTCCAGCGGCTTTTGTTTCCTTTAG 1068
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1022 GAGATTGAAACAGTCTTTATTAGCAGGAGAGGAAGTTCCAGCTGCTTTTGTTTCCTTTAG 1081
Query 1069 GACAAGACATGGTGCTGCAATAGCAACAAACATTCAGCAAGGAATAGATCCAACACAATG 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 GACAAGACATGGTGCTGCAATAGCAACAAACATTCAGCAAGGAATAGATCCAACACAATG 1141
Query 1129 GCTAACTGAGGCAGCCCCGGAGCCCAAAGATGTTCATTGGCCATTTTTCACTGCATCGTT 1188
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1142 GCTAACTGAGGCAGCCCCGGAGCCCGAAGATGTTCATTGGCCATTTTTCACTGCATCGTT 1201
Query 1189 TGTGAGAAGATGGATCTCCAATGTAGTGGTGCTCGTGGCTTTCGTAGCTCTTTTAATCCT 1248
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1202 TGTGAGAAGATGGATCTCCAATGTAGTGGTGCTTGTGGCTTTCGTAGCTCTTTTGATCCT 1261
Query 1249 ATACATTGTCCCTGTTGTATTGGTTCAAGGTCTTGCTAATCTTCACCAGTTAGAGACTTG 1308
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1262 ATACATTGTCCCCGTTGTATTGGTTCAAGGTCTTGCTAATCTTCACCAGTTGGAGACTTG 1321
Query 1309 GTTCCCTTTTCTAAAAGGCATATTAAATATGAAAATCGTGAGTCAAGTGATTACGGGATA 1368
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 GTTCCCTTTTCTAAAAGGAATATTAAATATGAAAATCGTGAGTCAAGTGATTACGGGATA 1381
Query 1369 TCTTCCGAGTCTAATTTTCCAGCTTTTCCTTCTTATAGTACCACCTATTATGCTTCTACT 1428
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1382 TCTTCCGAGTCTCATTTTCCAGCTTTTCCTTCTTATAGTACCACCCATTATGCTTCTACT 1441
Query 1429 TTCCTCAATGCAAGGATTCATTTCTCATAGCCAGATCGAGAAATCGGCATGTATCAAGCT 1488
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1442 TTCCTCAATGCAAGGATTCATTTCTCATAGCCAGATTGAGAAATCTGCATGTATCAAGCT 1501
Query 1489 TCTAATCTTTACCGTATGGAACAGTTTCTTTGCAAATGTACTGTCCGGATCTGCTCTTTA 1548
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1502 TCTAATCTTTACTGTATGGAACAGTTTCTTTGCAAATGTACTGTCCGGATCTGCCCTTTA 1561
Query 1549 TCGTGTTAATGTGTTCCTTGAACCTAAGACTATTCCTCGTGTGCTTGCTGCAGCTGTGCC 1608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1562 TCGTGTTAATGTGTTCCTTGAACCTAAGACTATTCCTCGTGTGCTTGCTGCAGCTGTGCC 1621
Query 1609 AGCACAGGCATCGTTCTTTGTATCTTATGTTGTGACCTCTGGATGGACTGGTTTATCATC 1668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1622 AGCACAGGCATCGTTCTTTGTATCTTATGTTGTGACCTCTGGATGGACTGGTTTATCATC 1681
Query 1669 AGAGATCCTCCGTTTGGTTCCTCTTCTTTGGAGTTTTATAACAAAACTTTTCGGCAAGGA 1728
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1682 AGAGATCCTCCGTTTGGTTCCTCTTCTTTGGAGTTTCATAACGAAACTTTTCGGCAAGGA 1741
Query 1729 AGATGACAAAGAATTTGAGGTTCCTCCAACTCCTTTCTGCCAAGAAATCCCAAAGG-TTC 1787
||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||
Sbjct 1742 AGATGACAAAGAATTTGAGGTTCCTTCAACTCCTTTCTGCCAAGAAATCCCAA-GGATTC 1800
Query 1788 TATTTTTTGGACTTCTCGGTATAACTTACTTCTTCCTTTCGCCATTGATACTGCCGTTCT 1847
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1801 TATTTTTTGGACTCCTCGGTATAACTTACTTCTTCCTTTCGCCATTGATACTGCCTTTCT 1860
Query 1848 TGTTGGTCTACTATTGTCTTGGATATGTCATCTACCGCAACCAGCTCCTAAACGTATATG 1907
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1861 TGTTGGTCTACTATTGTCTTGGATATATCATCTACCGCAACCAGCTCCTAAACGTATATG 1920
Query 1908 CGGCCAAGTATGAAACTGGTGGAAAGTTTTGGCCAATAGTACACAGCTACACTATCTTCT 1967
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1921 CGGCCAAGTATGAAACTGGTGGAAAGTTTTGGCCAATAGTTCACAGCTATACTATCTTCT 1980
Query 1968 CTTTGGTACTAATGCACATTATTGCAGTCGGATTATTTGGGCTTAAAAAGCTTCCAGTGG 2027
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1981 CTTTGGTACTAATGCACATTATTGCAGTCGGATTATTCGGGCTTAAAGAGCTTCCAGTGG 2040
Query 2028 CATCTTCTTTAACAATTCCCCTTCCGATTCTGACCGTCCTTTTCAGCATTTACTGCCAAA 2087
|||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||
Sbjct 2041 CATCTTCTTTAACAATTCCCCTTCCGGTTCTCACGGTCCTTTTCAGCATTTACTGCCAAA 2100
Query 2088 GACGGTTTTTACCAAATTTCAAATCTTATCCTACCCAGTGCCTAGTAAACAAAGACAAAG 2147
|||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 2101 GACGGTTTTTACCAAATTTCAAATCTTATCCTACCCAGTGTCTGGTAAACAAAGATAAAG 2160
Query 2148 CAGACGAGAGAGAGCAAAACATGTCTGAATTCTATTCGGAACTGGTTGTTGCTTACCGAG 2207
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2161 CAGACGAGAGAGAGCAAAACATGTCTGAATTCTATTCGGAACTCGTTGTTGCTTACCGAG 2220
Query 2208 ATCCTGCACTTCCGGCATCACAGAACTC-ACGAGACATCTCACCTTAAGATCACCTTTTT 2266
||||||||||| ||||||||||| |||| | |||| |||||||||| |||||||||||||
Sbjct 2221 ATCCTGCACTTTCGGCATCACAGGACTCGA-GAGATATCTCACCTTGAGATCACCTTTTT 2279
Query 2267 ACTTGAGCTTTTGAAGTTTGCTTATGTTGATTGAAGCGGTTAGCTTTACTATACCTGGTT 2326
||||||||| |||||||||||||||||||| | || ||| | |||||||||||||||
Sbjct 2280 ACTTGAGCTATTGAAGTTTGCTTATGTTGA---A-GCTGTTGG-TTTACTATACCTGGTG 2334
Query 2327 CAATACATGAAAGAACACACTAAACCGGTTGTCTTGTACATTGGGTCTTAACCGAGAATC 2386
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2335 CAATCCATGAAAGAACACACTAAACCGGTTGTCTTGTACATTGGGTCTTAACCGAGAATC 2394
Query 2387 AACCGGTTTTTGTGCTTGT------G-Taa-a------------aaaaaaGGAAAGA-GT 2425
|| |||||||||| ||||| | | | | ||||||| ||| | ||
Sbjct 2395 AAGCGGTTTTTGT-CTTGTACATTTGCTTACACTTGGCTTGTGTAAAAAAGAAAAAAAGT 2453
Query 2426 TTATGTCAGTGT-T-TCTCTAAACCGGTTTAAGACGGTACAAACCTTTTGAAAGTTGCCA 2483
|||||||| ||| | ||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 2454 TTATGTCAATGTATCTCTCTAAACCGGTTTAAGACGGTACAAACTTTTTGAAAGATGCCA 2513
Query 2484 AAACAAAACGTAATGATTTA-AAGTAAAA-ACAGAGAATATTTAGC 2527
|||||||||| || || | || | | ||||||||||||||||
Sbjct 2514 AAACAAAACGG--TGGTTAATAATTTTACCACAGAGAATATTTAGC 2557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125417357500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5