BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477426
Length=1588
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01060.1 | Symbols: | unknown protein; Has 640 Blast hits t... 2327 0.0
> AT3G01060.1 | Symbols: | unknown protein; Has 640 Blast hits
to 638 proteins in 201 species: Archae - 0; Bacteria - 293;
Metazoa - 0; Fungi - 71; Plants - 72; Viruses - 0; Other Eukaryotes
- 204 (source: NCBI BLink). | chr3:16643-18840 REVERSE
LENGTH=1614
Length=1614
Score = 2327 bits (1260), Expect = 0.0
Identities = 1400/1467 (95%), Gaps = 11/1467 (1%)
Strand=Plus/Plus
Query 1 AAAAACCTTACCTGaa--aaaaaaaaaaaaaTCGAATTC-AACTGAGAAGCGAAGAAGAA 57
|||||||||||||||| ||||||||||||| || | ||||||||||||||||||||
Sbjct 1 AAAAACCTTACCTGAACTAAAAAAAAAAAAA---AAAACGAACTGAGAAGCGAAGAAGAA 57
Query 58 AATGGCGGCAGCGGCCATGGCCGTTCATCTCCCGAAACATTCTTCGTTTCTTCCGAAACC 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 AATGGCGGCAGCGGCCATGGCCGTTCATCTCCCGAAACATTCTTCGTTTCTTCCGAAACC 117
Query 118 CAAACTTCCATTGGAT-AAAAACCACAACTTTCTCGGTGGCTCATTGAATTTAGGTCGAC 176
|||||||||||||||| ||||| | ||||||||||||||| ||||| |||||||||||||
Sbjct 118 CAAACTTCCATTGGATAAAAAAAC-CAACTTTCTCGGTGGGTCATTTAATTTAGGTCGAC 176
Query 177 CCATGTCCGTATACCGGGAAATTAACAGTCCGGTGTTGGTCTCCGCTTCTTCGACCAGCA 236
||||||||||| |||||||| |||||||||||||| ||||||||||||||||||| ||||
Sbjct 177 CCATGTCCGTAAACCGGGAATTTAACAGTCCGGTGATGGTCTCCGCTTCTTCGACGAGCA 236
Query 237 AGACCGTCGTTACTGATGACGTAGACGGAGATCGAAGTAAACGGTTTTATATAAACTTCA 296
|||||||| |||| |||||||||||||| |||| ||||||||| |||||||| |||||||
Sbjct 237 AGACCGTCCTTACCGATGACGTAGACGGCGATCAAAGTAAACGCTTTTATATTAACTTCA 296
Query 297 CTGGCTTTCCTTTTCCTCTTGGTCCTTTCCTTAACCGGCGCACCATCAGAACCGAGGCGG 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CTGGCTTTCCTTTTCCTCTTGGTCCTTTCCTTAACCGGCGCACCATCAGAACCGAGGCGG 356
Query 357 TTAAAGGTTGCATATGGATGTTTGAACAAGAACAAGCTTTAGGGTTTAGCAGTGTCTCCA 416
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 357 TTAAAGGTTGCATATGGATGTTTGAACAAGAACAAGCTTTAGGGTTTAGCAGCGTGTCCA 416
Query 417 CGAATATACGAATGACTATCATCAAACTAAAATCTGGAGGTTTATGGGTCCATGCTCCTA 476
| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 417 CTAATATACGAATGACTGTCATCAAACTAAAATCTGGAGGTTTATGGGTTCATGCTCCTA 476
Query 477 TTGCTCCCACCAAAGAGTGTATTCAGCTTATTAAGGAGTTGGAAGCTCCAGTTGAGTACA 536
|||||||||||||||||||| | ||||||||||||||||||| |||||| ||||||||||
Sbjct 477 TTGCTCCCACCAAAGAGTGTGTCCAGCTTATTAAGGAGTTGGGAGCTCCGGTTGAGTACA 536
Query 537 TTGTCCTTCCAACATTTGCTTATGAGCACAAGATTTTTGTCGGTCCTTTTTCAAGAAAGT 596
||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 537 TTGTCCTGCCAACGTTTGCTTATGAGCACAAGATTTTTGTCGGTCCTTTTTCTAGAAAGT 596
Query 597 TCCCTAAGGCTCAAGTATGGGTTGCACCAAGACAATGGAGCTGGCCATTGAACTTACCAC 656
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TCCCCAAGGCTCAAGTATGGGTTGCACCAAGACAATGGAGCTGGCCATTGAACTTACCAC 656
Query 657 TCGAGTTTTTTGGTATCTTTCGTGCTAAAATCATTAAAGACGGGGACTTATCTACGCCAT 716
| |||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 657 TTGAGTTTTTCGGTATCTTTCGTGCTAAAATCATCAAAGACAGGGACTTATCTACGCCAT 716
Query 717 GGGCTGAGGAGATCGAACAGAAAGTCCTAAGCTCCCCAGAAGTTGGAATTGGACCGTATG 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 717 GGGCTGAGGAGATCGAACAGAAAGTCCTAAGCTCCCCAGAAGTTGGAATTGGACCATATG 776
Query 777 TCGAAGTAGCGTTCTACCATAAGCGGTCAAGAACCCTTTTAGTCACCGATGCTGTGATAT 836
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 777 TCGAAGTAGCGTTCTACCATAAGCGGTCAAGAACCCTTTTAGTCACTGATGCTGTGATCT 836
Query 837 TCGTCCCGCGGAAACCGCCCTCGAGTATCAGCAATGAATCCTTGTTGGCCTCGGCTAAGA 896
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 837 TCGTCCCGCGGAAACCTCCCTCGAGTATCAGCAACGAATCCTTGTTGGCCTCGGCTAAGA 896
Query 897 ATGGACTAGCTGTGAAGATACTTAGCAAAGGAAAAGACGTACCCAATGATCCAGTGGTTG 956
|||||||||||||||||||||||||||||||||||||| | || |||||||| |||||||
Sbjct 897 ATGGACTAGCTGTGAAGATACTTAGCAAAGGAAAAGACATTCCTAATGATCCTGTGGTTG 956
Query 957 ATAATCCGAACACCCGCCAAAAAGGGTGGGAAAGAATGGTTCTACAAATCCTATTTCTTG 1016
||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 957 ATAATCCTAACACCCGCCAAAAAGGATGGGAAAGAATGGTTCTGCAAATCCTATTTCTTG 1016
Query 1017 GTCCCTCGAATCTCTTGGAACCAAACGCAAGCTTCGCACGAATGTCGCAGAAGCTGATCG 1076
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1017 GTCCCTCGAATCTCTTGGAACCAAACGCAAGCTTCGCACGAATGTCACAGAAGCTGATCG 1076
Query 1077 TTTCTCCCATTGTAAAGACTTTGGTCTTTAGCAAAGTCCCTGAGAAGGTGAGGGATTGGA 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TTTCTCCCATTGTAAAGACTTTGGTCTTTAGCAAAGTCCCTGAGAAGGTGAGGGATTGGA 1136
Query 1137 TCGATGAGATAGCCCGGGACTGGAGATTTAAAAGGATAATCCCAGCTCATTTCGAAGCTC 1196
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1137 TCGATGAGATAGCCCGTGACTGGAGATTTAAAAGGATTATCCCAGCTCATTTCGAAGCTC 1196
Query 1197 CAATAAAAGCAGGAAGATCAGAGTTTCTAGCTGCGTTTGGATTCCTAGAGGATCTTCTAG 1256
||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1197 CAATAAACGCAGGAAGATCAGATTTTCTAGCTGCGTTTGGGTTCCTAGAGGATCTTCTAG 1256
Query 1257 GGGAAAGATATGTAACTCGTCCTTCGCTCTCTCTTCTTTTCACTTCGCTAATGGGAAAAG 1316
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1257 GGGAAAGATATGTAACTCGTCCTTCGCTCTCTCTTCTCTTCACTTCACTAATGGGAAAAG 1316
Query 1317 CTGCGAGCTATTTTCCTCCAGACGATATGAGAACTCTCTCTTCTCTTGATCAGTTCTTAG 1376
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1317 CTGCGAGCTATTTTCCTCCAGACGATATGAGAACTCTCTCTTCACTTGATCAGTTCTTAG 1376
Query 1377 TCTCTGTTGGGGCTGTGAAAAAGACAGTATCCGGTAGAAAACGAAGATGATGGCAAAACA 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 TCTCTGTTGGGGCTGTGAAAAAGACAGTATCCGGTAGAAAACGAAGATGATGGCAAAACA 1436
Query 1437 Gaaaaaaa-aaGATTCAGCCTTGTAAT 1462
|||||| ||||| |||| || ||||
Sbjct 1437 GAAAAATGGAAGATACAGC-TT-TAAT 1461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78413251290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5