BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477432
Length=1067
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01030.1 | Symbols: | C2H2 and C2HC zinc fingers superfamil... 1406 0.0
> AT3G01030.1 | Symbols: | C2H2 and C2HC zinc fingers superfamily
protein | chr3:6657-7772 FORWARD LENGTH=1116
Length=1116
Score = 1406 bits (761), Expect = 0.0
Identities = 922/999 (92%), Gaps = 13/999 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGAACATCAAGAATTTGAGAAACCCATCTTCGAATTCCACCCTAAGAAGCTCAGA 60
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGAAGAACAACAAGAATTTGAGAAACCCATCTTCGAATTCCGTCCTAAGAAGCTCAGA 60
Query 61 AACTCTCGAGTTTCGAGAAATCTCACGAAGAAGACTGGTTTCAGAGAATCTATGAATCAT 120
| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 61 ACCTCTCGAGTTTCGAGAAATCTCATGAAGAAGACTGGCTTCAGAGAATCTATGAATCAT 120
Query 121 TACAAAGAGCTCTCTTGCAACTACGGATTGAGGGAAAACCCGAAGAAAACCCAGAAATCT 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TACGAAGAGCTCTCTTGCAACTACGGATTGAGGGAAAACCCGAAGAAAACCCAGAAATCT 180
Query 181 TTACTCGATCATCGATTGTGTACGAGGAGGAGGA-A--TAAGAAGAGCTTGATTCGATGC 237
||||||||||||||||| |||||||||||||||| | ||| |||| | |||||||||||
Sbjct 181 TTACTCGATCATCGATTCTGTACGAGGAGGAGGAGAAATAAAAAGATCCTGATTCGATGC 240
Query 238 AAAGAATGCGGGAAAGGGTTTCTTTACGAGAAATGTCTGTTGAATCATCGCCAAGTGACG 297
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 241 AAAGAATGCGGGAAAGGGTTTCTTTACGAGAAATGTCTGTTTAATCATCTCCAAGTGACG 300
Query 298 CATTCTGAAGAATCTATGAGAAAGA-GTCTATTTTGTAGCTTCAGTGTTGTGCAGAGGAG 356
|||||||||||||||| |||| || | || |||||||| || ||| |||||||||||||
Sbjct 301 CATTCTGAAGAATCTACAAGAA-GAAGCCTGTTTTGTAGGTTTAGTATTGTGCAGAGGAG 359
Query 357 AAAGAGATCGAAGAGAGTTTCCAGGTACAAGAAGATTCTTTCTCGATTCTCTGTTTCTTC 416
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 360 AAAAAGATCGAAGAGAGTTTCCAGGTACAAGAAGATTCTTCCTCGATTCTCTGTTTCTTC 419
Query 417 TTCTTCGTGTACAATGTTTCCTGTTTCTGTTGATGATGGAGGATTATTAGAAGTCGCTGA 476
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 420 TTCTTCGTGTACTATGTTTCCTGTTTCTGTGGATGATGGAGGATTATTAGAAGTCGCTGA 479
Query 477 GTCTCTGATTCTGTTGTCTATGAGTGGTGGAAAGTTCTTGAATGCTTTGGAAC-TTAGTG 535
|||||||||||| ||||| |||||||||||||||||| |||||| |||||||| || ||
Sbjct 480 GTCTCTGATTCTCTTGTCCATGAGTGGTGGAAAGTTCGTGAATGGTTTGGAACATTT-TG 538
Query 536 GTAGAGCTCTGGATTCGAATCCGAGAGAATTTGAACATGTGCTATTGAGAAATGAGCTGA 595
||| |||||||| ||||| || |||| |||||||| | | | ||||||||||||||| ||
Sbjct 539 GTAAAGCTCTGGGTTCGACTCAGAGAAAATTTGAAGACGGGTTATTGAGAAATGAGCAGA 598
Query 596 AACATT-TTGGTGAAGCTCTGGATTCGAATTCAGTGGTGAATTTGAGAAAAGATGGAGAC 654
|| || ||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 599 GAC-TTGTTGGTGAAGCTCTGGATTCGAATCCAGAGGTGAATTTGAGAAAAGATGGAGAC 657
Query 655 TTTGAAGATGGGTTTTTGAGTAATGAGCAGAAGAAACCTGTGGGGATTAGTAGAGCATCT 714
|||||| ||||| |||||||||||||||||||||||| ||||||||| || |||||||||
Sbjct 658 TTTGAATATGGGCTTTTGAGTAATGAGCAGAAGAAACTTGTGGGGATAAGCAGAGCATCT 717
Query 715 GTTGGAACGTCGAAAGAGCTTTCGGGTTACTTGGCAGACAAGAAGGCCAGAGAAGAAGAC 774
|||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||| ||
Sbjct 718 GTTGGAACATCGAAAGAGCTTTCGGGTTACTTGGCAAACAAGAAGGGCAGAGAAGATGAT 777
Query 775 GAATCTGG-TCAGCAGAAACTGG-TAGAAGCAGGAATTCTTAGAGAAGAAACCGATAACG 832
|||| ||| ||||||||||| || | || ||| |||| |||||||||||||| |||||||
Sbjct 778 GAAT-TGGGTCAGCAGAAACAGGCTGGA-GCAAGAATACTTAGAGAAGAAACTGATAACG 835
Query 833 AACACAAACTTGTTTGTCAAGAAACTGCATTTGAAGATTCAATATCAGGATTTGAGATGA 892
|||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 836 AACAGAAACTTGTTCGTCAAGAAACTGCATTTGAAGATTCAGTATCAGGATTTGAGATGA 895
Query 893 ATATTGAGCATCGGTGTGGGCTCTGTGACAAGGTTTTCTCGACTTATCAAGCTCTTGGTG 952
|||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 896 ATATAGAGCATCGGTGTGGGCTCTGTCACAAGGTTTTCTCGACTTATCAAACTCTTGGTG 955
Query 953 GTCATCAGACGTTCCATAGAATGAGAAACAAGTCCAAAA 991
||||||||||||||||||||||||||||||| |||||||
Sbjct 956 GTCATCAGACGTTCCATAGAATGAGAAACAAATCCAAAA 994
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52258767345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5