BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477433
Length=571
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01020.1 | Symbols: ISU2, ATISU2 | ISCU-like 2 | chr3:5104-6... 843 0.0
> AT3G01020.1 | Symbols: ISU2, ATISU2 | ISCU-like 2 | chr3:5104-6049
FORWARD LENGTH=683
Length=683
Score = 843 bits (456), Expect = 0.0
Identities = 537/575 (93%), Gaps = 10/575 (2%)
Strand=Plus/Plus
Query 1 ACTGCCCTTGATTCCGGCAAAGGAGAAGGAGAGATTATGATGATGCTAAGGCAAACGTCG 60
||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||
Sbjct 1 ACTGCCCTTGATTCCGGCAAA-GAGAAAGAGAGAATATGATGATGCTAAGGCAAACGTCG 59
Query 61 AGAAAGGCTTACCTAGGGTTACGA-GCGTCTCCTCTAGGGTTAGGGCGTCGATTATACCA 119
|||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||
Sbjct 60 AGAAAGGCTTACCTAGGGTTAC-AGGCGTCTCCTCTAGGGTTAGGTCGTCGATTATACCA 118
Query 120 CGAGAGTGTGATCGACCACTTTGAAAACCCTAGAAACGTTGGATCCTTCAACAGGAATGA 179
||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 119 CGAGAATGTAATCGACCACTTTGAAAACCCTAGAAACGTTGGCTCCTTCAACAGGAATGA 178
Query 180 CCCTAACGTTGGCACTGGATTGGTAGGAGCTCCTTCCTGCGGAGACCTCATGAGCCTCCA 239
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 179 CCCTAACGTTGGCACGGGATTGGTAGGAGCTCCTGCCTGCGGAGACCTCATGAGCCTCCA 238
Query 240 GATTAAGGTCGATGATTCAGGTCAAATCATTGACACTCGATTCAAGACCTTTGGCTGTGG 299
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 239 GATTAAGGTCGATGATTCAGGTCAGATCATTGATACTCGATTCAAGACCTTTGGCTGTGG 298
Query 300 CTCTGCTATCGCCTCCTCTTCCGTCGCTTCTGAATGGATCAAGGGCAAAACCTTAGAGGA 359
||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 299 CTCCGCTATCGCCTCATCTTCCGTTGCTTCTGAATGGATCAAGGGCAAAACCTTAGACGA 358
Query 360 AGTTTTGACCATCAAGAATGCGGAAATCGCAAAGCATATAAGTTTGCCACCCGTTAAGCT 419
|||| ||||||||||||| ||||||||||| |||||| | || |||||||| || |||||
Sbjct 359 AGTTATGACCATCAAGAACGCGGAAATCGCTAAGCATCTTAGGTTGCCACCGGTAAAGCT 418
Query 420 ACATTGCAGTATGCTTGCAGAGGACGCTATCAAGTCTGCGGTCAGAGACTACAAGGAGAA 479
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 419 ACATTGCAGTATGCTTGCAGAGGACGCTATCAAGTCCGCGGTCAGAGACTACAAGGAGAA 478
Query 480 GCAAGCAAAGGCTAATGCTGCTGCTGCAGGAGAAATCGTCAAGGCCTGAT--T-CCACTA 536
|||||||||| |||||||||||||||||| ||||| |||||||||||||| | |||||
Sbjct 479 GCAAGCAAAGACTAATGCTGCTGCTGCAGAAGAAACCGTCAAGGCCTGATGATTCCACT- 537
Query 537 ATATATGCCGTATTGTGCTTCTGCTGATGATGAAT 571
|||| ||| |||||||| |||||||||||||||
Sbjct 538 -TATA--CCGCATTGTGCTGCTGCTGATGATGAAT 569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27427844262
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5