BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477435
Length=1703
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01015.1 | Symbols: | TPX2 (targeting protein for Xklp2) pr... 2401 0.0
> AT3G01015.1 | Symbols: | TPX2 (targeting protein for Xklp2)
protein family | chr3:1653-4159 REVERSE LENGTH=1754
Length=1754
Score = 2401 bits (1300), Expect = 0.0
Identities = 1617/1759 (92%), Gaps = 66/1759 (4%)
Strand=Plus/Plus
Query 1 TACATACATAGTCGAGAGCTTCCTCACAAGTCGCAACGGTCAGACAATTCcctcctctgc 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 3 TACATACAAAGTCGAGAGCTTCCTCACAAGTCGCAACGGTCAGACAATTCCCTCCTCTCC 62
Query 61 ctctctcttcttcttctt--cttc-ctc-ttcGAGAAGACAAAACCCTAATTTCTCACA- 115
|||||||||||||||||| |||| ||| |||| ||||||||||||||||||||||||
Sbjct 63 CTCTCTCTTCTTCTTCTTCCCTTCACTCACTCGAAAAGACAAAACCCTAATTTCTCACAT 122
Query 116 --------T-T-A---TTC--T--A-T-G--GAA-TCGACGAATGCTAAACACGAGACTC 153
| | | ||| | | | | ||| | || ||||||||||||||||||||
Sbjct 123 TTTTCTGCTCTCATCTTTCGATGGAGTCGACGAATTTGAAGAATGCTAAACACGAGACTC 182
Query 154 TGGTGATGGAACCGATCAGTTTTCAATCCAAGGATCAAGAGATTTCGA-AATTCTCCGAG 212
|||||||||| |||||||||||||||||||||| ||||||| |||| | ||||||||||
Sbjct 183 TGGTGATGGATCCGATCAGTTTTCAATCCAAGGCTCAAGAGGTTTC-ACGATTCTCCGAG 241
Query 213 AATTCTAACCCTAACGTCGTCTCACACTCGACTCCACTC--G----C---CAAATCGTCT 263
||||||||||||||| ||||||||||||||||||||||| | | ||||| |||
Sbjct 242 AATTCTAACCCTAACTTCGTCTCACACTCGACTCCACTCGAGAAATCGAGTAAATCTTCT 301
Query 264 GCGCAGAAGAATCCGAAAT------CGAA----G--CCGGCGGTTTTCTCACCACGGAAT 311
||||||||||||||||||| | || | ||||||||||||||||||||||||
Sbjct 302 GCGCAGAAGAATCCGAAATGGAAGCCTAATCCTGTTCCGGCGGTTTTCTCACCACGGAAT 361
Query 312 CGGATCAGAGAGAGGAGGTTCGTGGTGGTGAAGAAGAATTCAAGGAAGGAGAAGAAGGAT 371
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 362 CGGATCAGAGAGAGGAGGTTCGTGGTGGTGAAGAAGAATTCAAGGAAGGAGAAGAATGAT 421
Query 372 TCAGGGTCTGTGGATTGCAAATGTGGAGCTAAGACCAATTCCAACATGAAGAAATGTGTT 431
|| | |||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 422 TCCGCGTCTGTGGATTGCAAATGTGGAGCTAAGACCATTTCCAATATGAAGAAATGTGTC 481
Query 432 TGCATTGCGTATGAAACTCTACGGGCTTCACAGGAAGAGTTCTTCAACAATCGAAGAGAA 491
|| || || || |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 482 TGTATAGCATACGAAACTCTACGGGCGTCACAGGAAGAGTTCTTCAACAATCGAAGAGAA 541
Query 492 TCTGAATCAGAAATTGGAGAATCCAGCCAGAATTTGGAGGATGGAGATGAACAAGTCGAA 551
|| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 542 TCCGTATCAGAAATTGGAGAATCCAGCCAGAATTTGGAGGATGGAAATGAACAAGTCGAA 601
Query 552 ATTGGAGATTCTGATGAAATTAGGGTTTCTTCGATGAAGAGGAGAAGAGAAAAGGTATTG 611
|||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||
Sbjct 602 TTTGGAGATTCTGATGAAACTAGGGTTTCTTTGATGAAGAGGAGAAGAGAAAAAGTATTG 661
Query 612 GAAGAAGCGAGAATGAGTCTACCTGAATTTGGTAAAGTGATGCATCTTGTTAAAGCTTTT 671
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 662 GAAGAAGCGAGAATGAGTATACCTGAATTTGGTAAAGTGATGCATCTAGTTAAAGCTTTT 721
Query 672 GAGAAGCTTACTTGCTTCCCACTTTCAAAGGTAACATATAAGGAGGAAGAAGAAGATCAG 731
|||||||||||||||||||||||||| |||||||| | | | |||||||||||||||||
Sbjct 722 GAGAAGCTTACTTGCTTCCCACTTTCGAAGGTAACTTCT-A--AGGAAGAAGAAGATCAG 778
Query 732 ATTAAGAAACCTTTGAAATGGGAATTGCCTGGAATGAGCCAGCAGCCTAAGTGTCCAGAA 791
|||||| ||||||||||||||||||||||||||||||| | |||||||||||| |||||
Sbjct 779 ATTAAGCAACCTTTGAAATGGGAATTGCCTGGAATGAG-C--CAGCCTAAGTGTTCAGAA 835
Query 792 ACTGAGACTGATCAAGTCACTTGGAGCTCTTCGTT-T-T-C-TCCATCTGATTTGGTCTT 847
||||||| |||||| |||||||||| ||||| || | | | | |||||| |||| ||||
Sbjct 836 TCTGAGACAGATCAATTCACTTGGAGTTCTTCATTCTATCCAT-CATCTGGTTTGATCTT 894
Query 848 GACTGCTACAAATCTGGGACTAGAACAACCTCATGCCTCAGTTTCTTCATCATGGGACAA 907
|| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 AACAGCTACGAATCTAGGACTAGAACAACCTCATGCCTCAGTTTCTTCATCATGGGACAA 954
Query 908 TAGTGTTTCAAGTCTGAACTCAAATGGTGGCCGGAGGGGCAGAAGAAATAGCTTGGATTC 967
||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||
Sbjct 955 TAGTGTTTCAAGTCTCAACTCAAATGGTGGCCGGAGGGGCAGAAGAAATAGCTTCGAATC 1014
Query 968 CTCTGCTTCGATGGGATGTAGAAGATCGAA-GAAGAAGCAGATCAAAGTCACTTCTCTGA 1026
||||||||| |||||| |||||||||| || |||||||||||||||||||||||||||||
Sbjct 1015 CTCTGCTTCAATGGGAAGTAGAAGATC-AACGAAGAAGCAGATCAAAGTCACTTCTCTGA 1073
Query 1027 AGCCATTTAAACTCAGAACTGAGGAACGGGGAAGAATGAAAGAAGAAGAGTTTGCAAAAA 1086
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1074 AGCCATTTAAACTCAGAACTGAGGAACGGGGACGAATGAAAGAAGAAGAGTTTGCAAAGA 1133
Query 1087 AGCTACACGAGATGACGCAGGAGAAAG-AAAAAATGAGAATCCCCATAGCTCAAGGTCTT 1145
||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||
Sbjct 1134 AGCTACACGAGATGACGTTGGAGAAAGCAAAAAA-GAGAATCCCCATAGCTCAAGGTCTT 1192
Query 1146 CCCTGGACAACTGATGAACCTGAGAATTTGGTTAAGCCTCATGTGAAAGATATCACAATA 1205
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1193 CCCTGGACAACTGATGAACCTGAGAATCTGGTTAAGCCTCATGTGAAAGATATCACGATA 1252
Query 1206 CCAGTAGACTTGAAGCTCCATTCAGACATTCGAGCAGTAGAACGTGCAGAATTTGATTAC 1265
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1253 CCAGTAGACTTAAAGCTCCATTCCGACATTCGAGCAGTAGAACGTGCAGAATTTGATTAC 1312
Query 1266 CAGGTTGCTGAGAAAATAAACCTAATCGAGCAATACAAAACAGAAAGAGAACGCCAACAA 1325
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1313 CAGGTTACTGAGAAAATAAACCTAGTCGAGCAATACAAAACAGAAAGAGAACGCCAACAA 1372
Query 1326 AAGCTAGCAGAAGAAGAAGAGATACGAAGGCTGAGGAAAGAGTTGGTCCCTAAGGCACAA 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 AAGCTAGCAGAAGAAGAAGAGATACGAAGGCTGAGGAAAGAGTTGGTCCCTAAGGCACAA 1432
Query 1386 CCAATGCCTTACTTTGATCGACCATTCATTCCCAAAAGGTCGAACAAGCACCCGACGATA 1445
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1433 CCAATGCCATACTTTGATCGACCATTCATTCCCAAAAGGTCGAACAAGCACCCGACGGTA 1492
Query 1446 CCTCGAGATCCCAAGTTTAATATACCGCAACACAAGAAGATAAGATGCTGCAGTACATCG 1505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 CCTCGAGATCCCAAGTTTAATATACCGCAACACAAGAAGATAAGATGCTGCAGTACATCG 1552
Query 1506 TCTTGGAGTGACACTGGATCTTACATGAGCGACCTCTTGTACCAACAAGACCTCTAAAAA 1565
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1553 TCTTGGAGTGACACTGGATCTTACATGAGCGACCTCTTATACCAACAAGACCTCTAAACA 1612
Query 1566 ACCTTTGAATTCAATAATCTTGTTCCTTGTCCATATCATCTCTTCATAAACAACATCTTA 1625
| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1613 AGCTTTGCATTCAATAATCTTGTTCCTTGTCCATATCATCTCTTTATAAACAACATCTTA 1672
Query 1626 CCTTTTCCTTGAAGCAACCAATTAGTTGCAACTTACAAGATTTGG-TTTCCTCGTACTTG 1684
| ||||| |||||||||||||||||||| ||||| |||||||||| ||||||||||||||
Sbjct 1673 CATTTTCTTTGAAGCAACCAATTAGTTGGAACTTGCAAGATTTGGGTTTCCTCGTACTTG 1732
Query 1685 TTCCATCTTTGTAATCATG 1703
|||||||||||||||||||
Sbjct 1733 TTCCATCTTTGTAATCATG 1751
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84186313965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5