BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477436
Length=754
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02080.1 | Symbols: | Ribosomal protein S19e family protein... 1083 0.0
> AT3G02080.1 | Symbols: | Ribosomal protein S19e family protein
| chr3:363881-365275 REVERSE LENGTH=803
Length=803
Score = 1083 bits (586), Expect = 0.0
Identities = 721/781 (92%), Gaps = 29/781 (4%)
Strand=Plus/Plus
Query 1 AAAAACCCTAGTCTTTGCGGAGAGAGATTCAGCTGCGTTGGGCAAAATCCCAGACGAAGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 25 AAAAACCCTAGTCTTTGCGGAGAGAGATTCAGCTGCGTTGGGCAAAATCCCAGACGAAGA 84
Query 61 AGAGTGATTAGTCTATTGATATTTTGAGCCATGGC-A--GGTAAAACTGTGAAAGACGTC 117
|||||||||||| |||||| |||||||||||| | |||||||||||||||||||||
Sbjct 85 TCAGTGATTAGTCTTTTGATAACTTGAGCCATGGCAACTGGTAAAACTGTGAAAGACGTC 144
Query 118 TCTCCTCATGACTTCGTCAAGGCTTATGCTTCTCATCTCAAGCGATCTGGCAAGATCGAG 177
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 145 TCGCCTCATGACTTCGTCAAGGCTTATGCTTCTCATCTCAAGCGATCTGGCAAGATCGAG 204
Query 178 CTTCCCACATGGACAGACATTGTGAAGACCGGAAAGTTGAAGGAGCTTGCACCATATGAC 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 205 CTTCCCACATGGACAGACATTGTGAAGACCGGAAAGTTGAAGGAGCTTGCACCATATGAT 264
Query 238 CCTGATTGGTACTACATCAGAGCTGCATCTATGGCTAGGAAGGTTTACCTTAGGGGAGGA 297
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 265 CCTGATTGGTACTACATCAGAGCTGCATCTATGGCAAGGAAGGTTTACCTGAGGGGAGGA 324
Query 298 CTTGGTGTTGGTGCTTTCCGTAGAATCTATGGTGGCAGCAAGAGGAACGGTAGTCGCCCA 357
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 325 CTTGGTGTTGGTGCTTTCCGTAGAATCTATGGTGGAAGCAAGAGGAACGGTAGTCGCCCA 384
Query 358 CCTCACTTTTGCAAAAGCAGCGGAGGCATTGCCCGTCACATCCTCCAGCAGTTGGAGACA 417
|||||||||||||||||||| || || |||||||||||||||||||| ||| ||||||||
Sbjct 385 CCTCACTTTTGCAAAAGCAGTGGTGGTATTGCCCGTCACATCCTCCAACAGCTGGAGACA 444
Query 418 ATGAACATTGTTGAGCTCGACACCAAAGGAGGAAGAAGAATCACTTCCAGTGGCCAACGG 477
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 445 ATGAACATTGTTGAGCTCGACACCAAAGGAGGAAGAAGGATCACTTCCAGTGGCCAAAGG 504
Query 478 GATTTGGACCAGGTTGCTGGCCGTATTGCAGTTGAACCTTGAAGACCTGAATGTTCtttt 537
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 505 GATTTGGACCAGGTTGCTGGCCGTATTGCAGTTGAACCTTGAAGATCTTAATGTTCTTTT 564
Query 538 tt-tG-TTCTTCTACTTTTGAGGCCATTGTGCTTTTAGTGTTTATCTTTACTTTTAAGAA 595
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 TTGTTCTTCTTCTACTTTTGAGGCCATTGTGCTTTTAGTGTTTATCTTTACTTTTAAGAA 624
Query 596 ATGTTACCATTTCATGCTCAAGACTTGCACTCATAATGTTCAGAAATTTTTATCTTTTTG 655
|||||||||||||| |||||||||||| ||||||||||||| |||||| |||||||||
Sbjct 625 TTGTTACCATTTCATTCTCAAGACTTGCGCTCATAATGTTCAAAAATTT--ATCTTTTTG 682
Query 656 GTGATGGCTTTGAACATTTAAACTTAT-T-TT------T-T----GTGTTCCTCCAATTT 702
| |||||||||| ||||| |||||||| | || | | |||||| ||| ||||
Sbjct 683 GCGATGGCTTTGGACATTGAAACTTATGTCTTCAACCGTATTTTTGTGTTCGTCCGATTT 742
Query 703 AAGGATA-T-GG-T-T--T--CTTCA-CCCTAAATTGCTAATTTCATCCTTCTGTATTGC 753
||||||| | || | | | ||||| |||||||||||||||||||||||||| || |||
Sbjct 743 AAGGATAATAGGATATGGTTTCTTCATCCCTAAATTGCTAATTTCATCCTTCTTTAGTGC 802
Query 754 C 754
|
Sbjct 803 C 803
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36620693163
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5