BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477440
Length=1642
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02110.1 | Symbols: scpl25 | serine carboxypeptidase-like 25... 2665 0.0
> AT3G02110.1 | Symbols: scpl25 | serine carboxypeptidase-like
25 | chr3:370762-373722 REVERSE LENGTH=1647
Length=1647
Score = 2665 bits (1443), Expect = 0.0
Identities = 1582/1649 (96%), Gaps = 10/1649 (1%)
Strand=Plus/Plus
Query 1 AGACAAGCTAAAGGTAGAACTGTAGAAGCCAATCTC-AAAAGTCTCCGACACTCTCTAGA 59
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1 AGACAAGCTAAAGGTAGAACTGTAGAGGCCAATCTCAAAAAGTCTCCGACACTCTCTAGA 60
Query 60 TTTCCTTTTCTCCTTCTTTCTGGCCATGGCAATGGCAAAACACGTAATTTTCACCACTCT 119
|||||||| ||||||| |||||||||||||||||||||||| || |||||||||||||||
Sbjct 61 TTTCCTTTGCTCCTTCGTTCTGGCCATGGCAATGGCAAAACTCGCAATTTTCACCACTCT 120
Query 120 CATGGCCATACTTGTAATGACATCTCAAGGAAGAATTCCAAC---AGGAGGAGAGAAAGA 176
||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 121 TATGGCCATACTCGTAATGACATCTCAAGGAAGGATTCCAACAGAAGGAGGAGAGAAAGA 180
Query 177 AGCAGAGGCTGACCGAATTACGTCACTTCCAGGTCAGCCTAAAGTCACGTTCGAGCAGTT 236
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 AGCAGAGGCTGACAGAATTACGTCACTTCCAGGTCAGCCTAACGTCACGTTCGAGCAGTT 240
Query 237 TTCCGGCTATGTCACCGTCGATAAACTCTCCGGAAGATCACTCTTTTACTGGCTCACCGA 296
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 241 TTCCGGCTACGTCACCGTCGATAAACTCTCCGGAAGATCACTCTTTTATTGGCTCACTGA 300
Query 297 AGCTTCTGACCTCCCTCTCTCCAAACCTCTCGTAATTTGGCTCAACGGAGGACCGGGGTG 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 301 AGCTTCTGACCTCCCTCTCTCCAAACCTCTCGTAATTTGGCTCAACGGAGGACCGGGATG 360
Query 357 TTCGTCGGTAGCGTACGGTGCGTCGGAGGAGATTGGACCATTCAGGATAAGCAAAGGTGG 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTCGTCGGTAGCGTACGGTGCGTCGGAGGAGATTGGACCATTCAGGATAAGCAAAGGTGG 420
Query 417 TTCCGGTTTGTATCTCAACAAATTCGCTTGGAACTCAATCTCCAATCTCTTGTTCCTCGA 476
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 421 TTCCGGTTTGTATCTCAACAAGTTCGCATGGAACTCAATCTCCAATCTCTTGTTCCTCGA 480
Query 477 AGCTCCTGCCGGCGTTGGCTTCTCTTACACTAACCGCTCCTCCGATCTATTCAACACCGG 536
|||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 481 AGCTCCCGCCGGCGTCGGCTTCTCTTACACTAACCGCTCCTCCGATCTCTTCAACACCGG 540
Query 537 CGATCGTCGTACCGCCAAAGATTCACTTCAGTTTCTTATTCAATGGCTTCACCGGTTTCC 596
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGATCGCCGTACCGCCAAAGATTCACTTCAGTTTCTTATTCAATGGCTTCACCGGTTTCC 600
Query 597 GAGATACAACCACCGAGAAATCTACATCACCGGCGAGAGTTACGCCGGACATTACGTTCC 656
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GAGATACAACCACCGGGAAATCTACATCACCGGCGAGAGTTACGCCGGACATTACGTTCC 660
Query 657 TCAGCTCGCCAAAGAGATCATGAATTACAACAAACGATCAAAGAATCCGTTAAATCTCAA 716
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCAGCTGGCCAAAGAGATCATGAATTACAACAAACGATCAAAGAATCCGTTAAATCTCAA 720
Query 717 AGGAATCATGGTTGGAAACGCGGTGACAGACAATCACTATGATAACCTCGGAACGGTGTC 776
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 721 AGGAATCATGGTTGGAAACGCGGTGACGGACAATCACTATGATAACCTAGGAACGGTTTC 780
Query 777 GTATTGGTGGAGCCACGCGATGATCTCTGATCGGACGTATCATCAGTTAATAAACACTTG 836
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 781 GTATTGGTGGAGCCACGCGATGATCTCTGATCGGACGTATCATCAGTTGATAAGCACTTG 840
Query 837 CGATTTTAGTCGCCAGAAGGAATCTGATGAATGTGAAACCCTTTATTCTTACGCTATGGA 896
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 841 CGATTTTAGTCGTCAGAAGGAATCTGATGAATGCGAAACCCTTTATTCTTACGCTATGGA 900
Query 897 GCAGGAGTTTGGTAACATCGATCAGTACAACATCTATGCACCGCCGTGTAACAAGTCAAG 956
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 901 GCAGGAGTTTGGTAACATTGATCAGTACAACATCTATGCGCCGCCGTGTAACAAGTCAAG 960
Query 957 TGACGGTGGTGGTGGCTACACTGGTTCATCCGGCCGCCGGAGTATGCGGCTTCCTCACCT 1016
|||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 961 CGACGGTGGTGGTAGCTACAATGGTTCTTCCGGCCGCCGGAGTATGCGGCTTCCTCACCT 1020
Query 1017 TCCCCACTCCGTATTGAGGAAAATTTCCGGTTATGATCCGTGTACGGAGAGATATGCAGA 1076
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1021 TCCCCACTCCGTATTGAGGAAAATTTCCGGTTATGATCCATGTACCGAGAGATATGCAGA 1080
Query 1077 GATCTATTATAACCGGCCTGATGTTCAGAAAGCTCTTCATGCCAATACCACCAAGATTCC 1136
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1081 GATCTATTATAACCGGCCTGATGTTCAGAAAGCTCTTCACGCCAACACCACCAAGATTCC 1140
Query 1137 ATATAAATGGACAGCTTGCAGTGAGGTGCTAAACCGGAATTGGAATGATACAGATTCAAC 1196
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1141 GTATAAATGGACAGCTTGCAGTGAGGTGCTAAACCGGAATTGGAACGACACAGATTCAAC 1200
Query 1197 GGTTCTCCCTATATACCGGGAAATGATTGCCGGCGGGATTAGAGTTTGGGTTTACAGTGG 1256
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1201 GGTTCTCCCTATATACCGGGAAATGATTGCCGGCGGAATTAGAGTTTGGGTTTTCAGTGG 1260
Query 1257 TGACGTCGATTCAGTTGTACCAGTGACAGCTACTAGATACTCACTAGCAAGACTTAGTTT 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TGACGTCGATTCAGTTGTACCAGTGACAGCTACTAGATACTCACTAGCAAGACTTAGTTT 1320
Query 1317 GAGTACCAAACTTCCTTGGTATCCTTGGTACGTCAAGAAACAGGTCGGCGGATGGACGGA 1376
|||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 1321 GAGTACCAAACTTCCTTGGTATCCTTGGTATGTCAAGAAACAGGTTGGAGGATGGACGGA 1380
Query 1377 AGTGTACGACGGACTAACGTTCGTGACGGTGAGAGGAGCAGGTCACGAGGTGCCATTGTT 1436
|||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1381 AGTGTATGAAGGACTAACGTTCGTGACGGTTAGAGGAGCAGGTCACGAGGTGCCATTGTT 1440
Query 1437 CAAGCCACGTGCTGCTTTTGAGCTATTTAAGTATTTCTTGAGAGGCAAGCCACTTCCAAA 1496
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1441 CAAGCCACGTGCTGCTTTTGAGCTTTTTAAGTATTTCTTGAGAGGCAAGCCACTTCCAAA 1500
Query 1497 GGCTTGAAAAACATTGAAGTCAAGAGAGA--TTGTAACATTTTAAATCATGCCCGAGAGA 1554
||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||| |
Sbjct 1501 GGCTTAAAAAA-ATTGAAGTCAAGAGAGAGATTGTAACATTTGAAATCATGCCCGAGA-A 1558
Query 1555 AAA-GAAAATGTAAAGTTTGGGTTATGAGATGGTATTTAATTAAGTCTTAGTCTATTATT 1613
||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
Sbjct 1559 AAATGAAAATGTAAAGTTTGGGTTATGAGATGGTATTTAATTAAATCT-AGTCTATTAAT 1617
Query 1614 GACAACAAGTATTTAATTATTTAGCCTAT 1642
|||| ||||||||||||||||||||||||
Sbjct 1618 GACAGCAAGTATTTAATTATTTAGCCTAT 1646
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81124080720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5