BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477442
Length=3198
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02130.1 | Symbols: RPK2, TOAD2, CLI1 | receptor-like protei... 4776 0.0
> AT3G02130.1 | Symbols: RPK2, TOAD2, CLI1 | receptor-like protein
kinase 2 | chr3:380726-384405 FORWARD LENGTH=3680
Length=3680
Score = 4776 bits (2586), Expect = 0.0
Identities = 2966/3150 (94%), Gaps = 23/3150 (1%)
Strand=Plus/Plus
Query 1 GGGGGATGGAGAAGCTTGAAGTTCTTGATCTGGAAGGGAATTTGATGACCGGGTCGTTGC 60
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 494 GGGGAATGGAGAAGCTTGAAGTTCTTGATCTGGAAGGGAATTTGATGACGGGGTCATTGC 553
Query 61 C-TATTCAGTTTACTGGGTTACGGAATTTGCGGGTTATGAATTTAGGGTTTAACCGAGTT 119
| | ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 554 CGGA-TCAGTTTACTGGGTTACGGAATTTGCGGGTTATGAATTTGGGGTTTAACAGAGTT 612
Query 120 TCAGGTGAAATCCCTAATTCGCTGAAGAATCTGTCAAAGTTGGAGATTTTGAATTTGGGT 179
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 613 TCAGGTGAAATCCCTAATTCGCTGCAGAATCTGACAAAGTTGGAGATTTTGAATTTGGGT 672
Query 180 GGTAATAAGTTGAATGGAACTGTTCCTGGTTTTGTTGGGAGATTCAGAGTGGTGCACTTG 239
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 673 GGTAATAAGTTGAATGGAACTGTTCCTGGTTTTGTTGGGAGATTCAGAGTGTTGCATTTG 732
Query 240 CCGTTAAACTGGCTTCAAGGCTCTTTGCCTAAAGATATTGGGGATAACTGTGGAAATCTT 299
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 733 CCGTTAAACTGGCTTCAAGGCTCTTTGCCTAAAGATATTGGGGATAGCTGTGGAAAGCTT 792
Query 300 GAGCATTTAGATTTGTCTGGTAATTTCTTGACTGGGAGGATTCCAGAGAGTTTGGGGAGA 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 793 GAGCATTTAGATTTGTCTGGTAATTTCTTGACTGGGAGGATTCCAGAGAGTTTGGGGAAA 852
Query 360 TGTGGC-GTTTTAAGGTCGTTGTTGTTGTATATGAATACGTTGGAGGAGACTATCCCTTT 418
||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 TGT-GCTGGTTTAAGGTCGTTGTTGTTGTATATGAATACGTTGGAGGAGACTATCCCTTT 911
Query 419 AGAATTTGGGAATCTTCAGAAGCTTGAGGTTTTGGATGTTTCTAGGAACACTCTTAGTGG 478
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 AGAATTTGGGAGTCTTCAGAAGCTTGAGGTTTTGGATGTTTCTAGGAACACTCTTAGTGG 971
Query 479 TCCATTACCTGTTCAACTCGGGAATTGCTCTTTGTTGTCTGTTCTCGTGT-TATCCAATC 537
||||||||||||| |||| || |||||||||| ||||||||||||||| | |||| ||||
Sbjct 972 TCCATTACCTGTTGAACTTGGAAATTGCTCTTCGTTGTCTGTTCTCGT-TCTATCAAATC 1030
Query 538 TGTACAATGTGTATGAAGACATTAATAGTATAAGAGGGGAAGCTGATCTACCTCCAGGCG 597
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 1031 TGTACAATGTGTATGAAGACATTAATAGTGTAAGAGGGGAAGCTGATCTTCCTCCAGGCG 1090
Query 598 CTGATTTAACCTCGATGACCGAGGATTTCAATTTCTATCAAGGAGGAATTCCGGAGGAAA 657
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1091 CTGATTTAACCTCGATGACCGAGGATTTCAATTTCTATCAAGGAGGAATCCCGGAGGAAA 1150
Query 658 TCACTACGCTTCCGAAACTAAAGATACTTTGGGTGCCAAGGGCTACTTTAGAAGGGAGAT 717
|||||| |||||||||||||||||||||||||||||| || ||||| |||||||| ||||
Sbjct 1151 TCACTAGGCTTCCGAAACTAAAGATACTTTGGGTGCCCAGAGCTACGTTAGAAGGTAGAT 1210
Query 718 TTCCAGGAGATTGGGGTTCATGTCAAAACTTGGAGATGGTTAATTTGGGTCAGAACTTCT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1211 TTCCAGGAGATTGGGGTTCATGTCAAAACTTGGAGATGGTTAATTTGGGTCAGAACTTCT 1270
Query 778 TTAAAGGTGAAATTCCTGTCGGTCTTAGTAACTGTAAGAACCTTCGTCTTCTTGATTTGA 837
||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1271 TTAAAGGCGAAATTCCTGTCGGTCTTAGTAAATGCAAGAACCTTCGTCTTCTTGATTTGA 1330
Query 838 GCTCGAATAGGCTTAC-GGGAGAGCTTCTCAAAGAGATTTCGGTCCCATGCATGAGTGTT 896
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1331 GCTCGAATAGGCTTACTGGG-GAGCTTCTCAAAGAGATTTCGGTCCCATGCATGAGTGTT 1389
Query 897 TTTGATGTTGGTGGAAATAGCTTATCGGGTGTAATCCCTGAGTTTCTCAAAAATACCACA 956
||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1390 TTTGATGTTGGTGGAAACAGCTTATCGGGTGTAATCCCTGATTTTCTCAACAATACCACA 1449
Query 957 AGCCATTGTCCTCCTGTTGTTTACTTTGACAGGTTTTCTATTGAATCTTACAGCGACCCG 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1450 AGCCATTGTCCTCCTGTTGTTTACTTTGACAGGTTTTCTATTGAATCTTACAGCGACCCG 1509
Query 1017 TCGTCTGTTTATCTCTCCTTCTTCACCGAGAAGGCTCAAGTTGGAACTTCCCTGATAGAT 1076
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1510 TCGTCTGTTTATCTCTCCTTCTTTACCGAGAAGGCTCAAGTTGGAACTTCCCTGATAGAT 1569
Query 1077 CTTGGAGGTGATGGAGGTCCGGCCGTGTTTCATAATTTTGCAGACAACAACTTCACTGGT 1136
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1570 CTTGGAAGTGATGGAGGTCCGGCCGTGTTTCATAATTTTGCAGACAACAACTTCACTGGT 1629
Query 1137 ACTCTCAAGTCTATACCACTTGCACAAGAGCGGTTGGGAAAGCGAGTCTCTTACATATTT 1196
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1630 ACTCTCAAGTCTATACCACTTGCACAGGAGCGGTTGGGAAAGCGAGTCTCTTACATATTT 1689
Query 1197 TCTGCTGGAGGGAACCGGTTGTACGGGCAATTCCCTGGAAATCTGTTCGATAACTGCGAC 1256
|||||||||||||| ||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct 1690 TCTGCTGGAGGGAATCGGTTGTACGGGCAATTTCCGGGAAATCTGTTTGATAACTGCGAC 1749
Query 1257 GAACTCAAAGCTGTTTATGTCAATGTAAGCTTCAACAAGCTCTCAGGTCGGATTCCTCAG 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1750 GAACTCAAAGCTGTTTATGTCAATGTAAGCTTCAACAAGCTCTCAGGTCGGATTCCTCAG 1809
Query 1317 GGACTAAACAACATGTGCACTTCTCTTAAGGTTCTTGATGCCTCGTTGAATCAGATCTTC 1376
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1810 GGACTAAACAACATGTGCACTTCTCTTAAGATTCTTGATGCCTCGGTGAATCAGATCTTC 1869
Query 1377 GGGCCAATCCCTTCGAGTCTCGGGGATCTAGGTTCGCTTGTTGCTCTTAATCTGAGCTGG 1436
||||||||||| | |||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1870 GGGCCAATCCCAACAAGTCTCGGGGATCTAGCTTCACTTGTTGCTCTTAATCTGAGCTGG 1929
Query 1437 AATCAGTTGCAAGGTCAGATACCGGGTAGCCTCGGGAAGAAGATGACAGCTTTGACATAT 1496
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1930 AATCAGTTGCAAGGTCAGATACCGGGTAGCCTCGGGAAGAAGATGGCAGCTTTGACATAT 1989
Query 1497 CTTTCGATTGCGAATAATAACCTCACGGGGCAAATTCCTCAGAGCTTTGGTCAGTTACAT 1556
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1990 CTTTCGATTGCGAATAACAACCTCACGGGGCAAATTCCTCAGAGCTTTGGTCAGTTACAT 2049
Query 1557 TCCTTGGATGTTCTTGATCTCTCTTCAAATTATCTATCTGGCGGCATTCCTCATGATTTT 1616
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 2050 TCCTTGGATGTTCTTGATCTCTCTTCAAATCATCTATCTGGCGGTATTCCTCATGATTTC 2109
Query 1617 ATAAACTTGAAGAATCTCACTGTCCTGCTTCTCAACAATAACAACCTCTCTGGCCCAATC 1676
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2110 GTAAACTTGAAGAATCTCACTGTCCTGCTTCTCAACAATAACAACCTCTCTGGCCCAATC 2169
Query 1677 CCATCTGGTTTCGCAACATTTGC-GATTTTCAATGTTTCCTCCAACAATCTGTCAGGTCC 1735
|| || ||||| || |||||||| | |||||||||||||||||||||||||||| |||||
Sbjct 2170 CCGTCGGGTTTTGCGACATTTGCTG-TTTTCAATGTTTCCTCCAACAATCTGTCTGGTCC 2228
Query 1736 AGTTCCTTCAACCAACGGGCTGACGAAATGCAGCGGTATTCGTGGAAACCCCTATCTTCG 1795
||||||||||||||| || ||||||||||||||| | || |||||||||||||||||||
Sbjct 2229 AGTTCCTTCAACCAATGGACTGACGAAATGCAGCACTGTTAGTGGAAACCCCTATCTTCG 2288
Query 1796 ACCTTGCCATGTGTTTTCTCTGACGACTCCGTCTTCGGAATCCCGAGACTCCACAGGAGA 1855
|||||||||||||||||||||||| || ||||||||||| |||||||||||||| || ||
Sbjct 2289 ACCTTGCCATGTGTTTTCTCTGACAACACCGTCTTCGGATTCCCGAGACTCCACGGGTGA 2348
Query 1856 TTCTATCACACAGGATTACGCATCTTCACCTGTTGAAAACGCTCCATCTCAGTCGGCAGG 1915
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 2349 TTCTATCACGCAGGATTACGCATCTTCGCCTGTTGAAAACGCTCCATCTCAGTCGCCAGG 2408
Query 1916 AAAGGGCGGATTCAACTCGCTAGAGATTGCTTCAATTGCATCAGCTTCAGCAATTGTCTC 1975
|||||| |||||||||||||||||||| || ||||| |||||||||||||| ||||||||
Sbjct 2409 AAAGGGTGGATTCAACTCGCTAGAGATCGCCTCAATCGCATCAGCTTCAGCGATTGTCTC 2468
Query 1976 GGTTCTGATCGCTCTTGTGATTCTTTTCTTCTACACGAGAAAATGGCATCCGAAATCGAA 2035
||| || || |||||||| ||||| ||||||||||| || ||||||||||||||||||||
Sbjct 2469 GGTACTAATTGCTCTTGTAATTCTCTTCTTCTACACAAGGAAATGGCATCCGAAATCGAA 2528
Query 2036 GATCATGGCCACTACAAAACGTGAAGTCACTATGTTTATGGACATCGGAGTTCCAATAAC 2095
||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 2529 GATCATGGCCACTACAAAACGAGAAGTCACTATGTTCATGGATATCGGAGTTCCAATAAC 2588
Query 2096 CTTTGACAACGTGGTTAGAGCCACAGGAAACTTCAATGCGAGCAATCTGATTGGAAACGG 2155
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 2589 CTTTGACAACGTGGTTAGAGCCACAGGAAACTTCAACGCAAGCAATCTGATTGGAAATGG 2648
Query 2156 TGGATTTGGAGCGACCTACAAAGCAGAAATCTCTCAAGACGTGGTTGTGGCAATCAAACG 2215
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 2649 TGGATTTGGAGCGACCTACAAAGCAGAAATCTCTCAAGATGTGGTTGTCGCAATCAAACG 2708
Query 2216 CCTCTCTATCGGACGGTTTCAGGGCGTCCAACAGTTCCACGCAGAGATCAAAACTCTTGG 2275
|||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 2709 CCTCTCGATCGGACGGTTTCAGGGAGTCCAACAGTTCCACGCAGAAATCAAAACTCTTGG 2768
Query 2276 TAGACTTCGACACCCGAATCTCGTGACTCTCATTGGTTACCACGCTAGCGAAACGGAGAT 2335
|||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct 2769 TAGACTTCGACACCCGAACCTCGTGACTCTCATCGGTTACCACGCTAGCGAAACTGAGAT 2828
Query 2336 GTTCCTGATTTACAACTATCTCCCAGGAGGCAACCTCGAGAAATTCATCCAAGAAAGATC 2395
|||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2829 GTTCTTGGTGTACAACTATCTCCCAGGAGGCAACCTCGAGAAATTCATCCAAGAAAGATC 2888
Query 2396 CACAAGAGATTGGAGAGTTCTTCACAAGATCGCCCTGGACATAGCTCGAGCACTCGCTTA 2455
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 2889 CACAAGAGATTGGAGAGTTCTTCATAAGATCGCTCTGGACATAGCTCGAGCACTCGCTTA 2948
Query 2456 CCTCCACGACCAATGCGTCCCACGGGTGCTTCACCGAGATGTTAAACCAAGCAACATCCT 2515
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 2949 CCTCCACGACCAATGCGTCCCACGGGTGCTTCACCGAGATGTTAAACCGAGTAACATCCT 3008
Query 2516 CCTAGATGATGATTGCAACGCATATTTATCAGATTTCGGGTTAGCAAGATTGCTTAGGAC 2575
|||||||||||| ||||| || ||||||||||||||||||||||| ||||||||| ||||
Sbjct 3009 CCTAGATGATGACTGCAATGCGTATTTATCAGATTTCGGGTTAGCGAGATTGCTTGGGAC 3068
Query 2576 ATCAGAAACGCATGCAACAACAGGTGTGGCAGGTACGTTTGGGTATGTAGCGCCTGAGTA 2635
||| |||||||| |||||||| |||||||| |||||||||||||||||||| || |||||
Sbjct 3069 ATCGGAAACGCACGCAACAACTGGTGTGGCGGGTACGTTTGGGTATGTAGCTCCCGAGTA 3128
Query 2636 CGCCATGACTTGCCGGGTATCGGACAAAGCGGATGTCTACAGCTACGGAGTGGTGCTTCT 2695
||| ||||| ||| ||||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 3129 CGCAATGACATGCAGGGTATCAGACAAAGCAGATGTATACAGCTACGGAGTGGTGCTTCT 3188
Query 2696 AGAGCTGCTATCGGACAAGAAAGCGCTAGATCCGTCGTTTGTTTCATACGGTAACGGATT 2755
||||||||| |||||||||||||| || |||||||| ||||| || || ||||| || ||
Sbjct 3189 AGAGCTGCTTTCGGACAAGAAAGCACTTGATCCGTCATTTGTGTCGTATGGTAATGGTTT 3248
Query 2756 CAACATTGTGCAGTGGGCTTGTATGCTGCTGAGACAAGGACGGGCAAAGGAGTTTTTCAC 2815
|||||| ||||| |||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 3249 CAACATAGTGCAATGGGCTTGTATGTTGTTGAGACAAGGAAGGGCAAAGGAGTTTTTCAC 3308
Query 2816 AGTGGGATTATGGGACGCGGGTCCGCATGATGATCTAGTAGAGGTTCTGCATTTAGCAGT 2875
|| |||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 3309 AGCGGGATTGTGGGACGCAGGTCCGCATGATGATCTAGTAGAGGTTCTGCATTTAGCGGT 3368
Query 2876 AGTTTGTACGGTGGATTCTCTATCAACGAGGCCGACGATGAAGCAAGTTGTAAGACGATT 2935
|||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 3369 TGTTTGTACGGTGGATTCTCTGTCGACGAGGCCGACGATGAAGCAAGTTGTAAGACGGTT 3428
Query 2936 AAAGCAGCTCCAGCCTCCGTCGTGTTAGCACCTCCCTCCGCAGGATTTGATTATTATTCT 2995
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3429 GAAGCAGCTACAACCTCCGTCGTGTTAGCACCTCCCTCCGCAGGATTTGATTATTATTCT 3488
Query 2996 TTCTT-aaaaaaaGGT-T-T-ATTT-TGCTCTTAGC-TGTAAACTT-GT--TTGTGTAAG 3046
||||| |||||||| | | | | || | ||| | ||| || | || |||| || |
Sbjct 3489 TTCTTTAAAAAAAGTTCTCTCAGTTGTAAACTT-GTATGTGTACGTAGTAGTTGT-TA-G 3545
Query 3047 AAGAAGAAAGAGAGGTTAATATTTCCTTTGGGTTCTCTCGAGGGTAAAAAGGACATTTTA 3106
||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||| |
Sbjct 3546 AAGAAGAAAGAGAGGTTGA-ATTTCCTATGGGTTCTCTCGAGGGTAAAAAGGACATTTGA 3604
Query 3107 AAAGGGAAGCCATAGGAAGGTTGATCTCTC 3136
|| |||||||||||||||||||||||||||
Sbjct 3605 AAGGGGAAGCCATAGGAAGGTTGATCTCTC 3634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 159079376253
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5