BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477445
Length=1262
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02150.2 | Symbols: PTF1, TFPD | plastid transcription facto... 1877 0.0
> AT3G02150.2 | Symbols: PTF1, TFPD | plastid transcription factor
1 | chr3:391057-392741 FORWARD LENGTH=1432
Length=1432
Score = 1877 bits (1016), Expect = 0.0
Identities = 1177/1252 (94%), Gaps = 22/1252 (2%)
Strand=Plus/Plus
Query 17 tttttGAAAAGAAAAATCGAATCACATActttcttctctcttatttctcattct-tcttc 75
||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 45 TTTTTGAAAAGAAAAGTCGAATCACATACTTTCTTCTCTC-TATTTCTCATTCTCTCTTC 103
Query 76 ttcATCATATTACTCACTTTATAGAACAGCAAAACCCTAGATTTGCTGTTCAAGCTCAAG 135
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 104 TTCATCATATTACTCATTTTATAGAACAGCAAAACCCTAGATTTCCTGTTCAAGCTCAAG 163
Query 136 ACCGTAC-AAACTTTGGAGCTCTAGATATAAAGATCTCGAGTATAGGCATTATGAATATC 194
||||||| |||||||||| ||| | |||||||||||||||| ||| ||||||||||||||
Sbjct 164 ACCGTACAAAACTTTGGAACTC-ATATATAAAGATCTCGAGAATA-GCATTATGAATATC 221
Query 195 GTCTCTTGGAAAGATGCAAACGACGAAGTTTCAGGCGGCGCTACCACAAGACGTGAAGGA 254
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||
Sbjct 222 GTCTCTTGGAAAGATGCAAACGACGAAGTTGCAGGCGGCGCTACGACAAGACGTGAAAGA 281
Query 255 GAAGTAGAAGAAGATCAAGAAGAAGCCCAAGTCAGAGCCACCAGTGGCAAAACCGTAATT 314
|||||| |||| |||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 282 GAAGTAAAAGAGGATCAAGAAGAAACCGAAGTCAGAGCCACCAGTGGCAAAACCGTAATT 341
Query 315 AAAAAGCCA-CCAACCTCGATCTCTTCCTCTTCTTCTTCTTCGTCGTGGATGAAATCGAA 373
|||||| || || || |||||||| | ||||||||||| | |||||||||||||| ||
Sbjct 342 AAAAAG-CAGCCTACATCGATCTC-T--TCTTCTTCTTC-T--TCGTGGATGAAATCCAA 394
Query 374 GGATCCAAGGATTGTTAGGGTTTCACGCGCCTTTGGAGGCAAAGACCGTCACAGCAAAGT 433
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 GGATCCGAGGATTGTTAGGGTTTCACGCGCCTTTGGAGGCAAAGACCGTCACAGCAAAGT 454
Query 434 GTGTACGTTACGTGGGTTACGTGACAGACGCGTGAGATTATCAGTCCCAACGGCCATTCA 493
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 455 GTGTACGTTACGTGGACTACGTGACAGACGCGTGAGATTATCAGTCCCAACGGCTATTCA 514
Query 494 GCTCTACGATCTTCAAGAACGGCTCGGTGTTGACCAGCCTAGCAAAGCCGTTGACTGGTT 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 GCTCTACGATCTTCAAGAACGGCTCGGTGTTGACCAGCCTAGCAAAGCCGTTGACTGGTT 574
Query 554 GCTTGATGCAGCTAAAGAGGAGATCGACGAGCTCCCTCCGTTACCTATCTCGCCGGAAAA 613
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 575 GCTTGATGCAGCTAAAGAGGAGATCGACGAGCTACCTCCGTTACCTATCTCGCCGGAAAA 634
Query 614 TTTCAGCATCTTCAACCATCATCACTCCTTCTTGAATCTTGGTCAAAGGCCGGGTCAAGA 673
|||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||
Sbjct 635 TTTCAGCATCTTCAACCATCATCAGTCCTTCTTGAATCTTGGTCAACGGCCCGGTCAAGA 694
Query 674 TCCGACCCAACTCGGGTTCAAAATCAATGGATGTGTAGAAGAGTCTACTACTACTAGCCG 733
|||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||
Sbjct 695 TCCGACCCAACTCGGGTTTAAAATCAATGGATGTGTACAAAAGTCTACTACTACTAGCCG 754
Query 734 TGAAGCAAACAATAAAGAGAAAGGAGAAAACGATGTCGTTTTCGCAAACAATCATCATGT 793
|||| |||| ||| |||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 755 CGAAGAAAACGATAGAGAGAAAGGAGAAAACGATGTCGTTTACACAAACAATCATCATGT 814
Query 794 TGGGTCTTATGGAACTTATCACAACATGGAAcatcatcatcatcatcaCCAACATTTGAG 853
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 815 TGGGTCTTATGGAACTTATCACAACCTGGAACATCATCATCATCATCACCAACATTTGAG 874
Query 854 TTTACAGGCGGATTATCATAATCATCAACATCAACTACATAGTCTTGTCCCATTTCCATC 913
||||||||| |||||||||| |||||||| | | | | |||||||||||||||||||||
Sbjct 875 TTTACAGGCAGATTATCATAGTCATCAAC-T-A-C-A--TAGTCTTGTCCCATTTCCATC 928
Query 914 ACAAATTTTGGTATGTCCAATGACGACATCAACAACAGC-A-A-CTATACAATCTTTGTT 970
||||||||||||||||||||||||||||||| ||||| | | | ||||||||||||||||
Sbjct 929 ACAAATTTTGGTATGTCCAATGACGACATCACCAACAACTACAACTATACAATCTTTGTT 988
Query 971 TCCATCATCGTCGTCAGCTGGTTCAGGAACTATGGAGACATTAGATCCGAGGCAAATGGT 1030
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 989 TCCATCATCATCGTCAGCTGGTTCAGGGACTATGGAGACATTAGATCCGAGGCAAATGGT 1048
Query 1031 GAGCCATTTTCAAATGCCAATAATGGGTAATTCTTCATCTTCGTCATCCCAAAACATTTC 1090
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1049 AAGCCATTTTCAAATGCCATTAATGGGTAATTCTTCATCTTCGTCTTCCCAAAACATTTC 1108
Query 1091 CACATTATATTCATTGTTACATGGTAGTAATAGCAACAATGGTGGTAGAGACATCAATAA 1150
||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1109 GACATTATATTCGTTGTTACATGGTAGTAGTAGCAACAATGGTGGTAGAGACATTGATAA 1168
Query 1151 TCGGATGTCGTCGGTCCAATTCAACCGAGCTAATAGCACTACAACGGCTAATATGTCGAG 1210
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1169 TCGGATGTCGTCGGTCCAATTCAACCGAACTAATAGCACTACAACGGCTAACATGTCGAG 1228
Query 1211 GCATTTAGGCTCGGAGAGTAGTACAAGTAGAGGAAGTGATCACCATATGTGA 1262
|||| ||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1229 GCATCTAGGCTCGGAGCGTTGTACAAGTAGAGGAAGTGATCACCATATGTGA 1280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62047873620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5