BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477446
Length=1647
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02160.1 | Symbols: | Bromodomain transcription factor | ch... 2401 0.0
> AT3G02160.1 | Symbols: | Bromodomain transcription factor |
chr3:394070-395984 FORWARD LENGTH=1700
Length=1700
Score = 2401 bits (1300), Expect = 0.0
Identities = 1560/1680 (93%), Gaps = 39/1680 (2%)
Strand=Plus/Plus
Query 1 TCTTTTTCTTCGCCTTCTCAAATTGGATCGAAAGGTTTT-AACTTGGAGCTGGGTTTTTG 59
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 25 TCTTTTTCTTCGCCTTCTCAAATTGGATCGAAA-GTTTTAAACTTGGAGCTGGGTTTTTG 83
Query 60 ATTCGCATTCGAAATTTCCTCAATTTCGTTTCTTGGTACTTTCAATCTCACTTCTTCTCT 119
|||||||| |||||||||||||||||||||| ||||| |||||||| |||||||||| ||
Sbjct 84 ATTCGCATGCGAAATTTCCTCAATTTCGTTTGTTGGTGCTTTCAATTTCACTTCTTCGCT 143
Query 120 AGGGTTTTCTCTCACTGTGTTCGCCGCCGATAGCTGCCCGAAGTTGTGCCTG---TTCTT 176
|| ||||||||||||||||||||||||||||||||||| |||||||| ||| |||||
Sbjct 144 AGCATTTTCTCTCACTGTGTTCGCCGCCGATAGCTGCCC-AAGTTGTGTCTGTTCTTCTT 202
Query 177 ---C--------TTC----------CCTTTTTCTCCGGTGCCAAAGAGAAGAATTTCGAG 215
| ||| |||||||||||||||| ||||||||| |||||||
Sbjct 203 CCCCGGTGAATTTTCAGTGGATAAAGCTTTTTCTCCGGTGCCTAAGAGAAGACTTTCGAG 262
Query 216 GGAAAGATATTGATTTTTGGTTTTGTGTTCTCAGAGGGATGCGTGTTGTGTTGGTTTTTC 275
|||||||||||| |||| |||||||||||| |||||||| |||||||||||||||||||
Sbjct 263 GGAAAGATATTGGCTTTT-GTTTTGTGTTCTGAGAGGGATACGTGTTGTGTTGGTTTTTC 321
Query 276 ATTCAAGAAATGGTTCTACATGCTATGTTGGGTGAAGTTATAACAAAG--TTTGAATATG 333
| |||||| ||||||||||||| |||||||||||||||| |||||||| ||||||||||
Sbjct 322 ACTCAAGAGATGGTTCTACATGTTATGTTGGGTGAAGTTGTAACAAAGTTTTTGAATATG 381
Query 334 AGCAATGGAGGTGGGGATGGTGGAAGTCAGCAAAGAGAATTACCTGGTAAGAGAAAGCTT 393
| |||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 382 AACAATGGAGTTGGGGAAGGTGGAAGTCAGCAAAGAGAATTACATGGTAAGAGAAAGCTT 441
Query 394 TTCCGAGGCAGTGATTTTGCGTTTTCCATAGCGAGAATGGCAGTGGCTCAGATATGCGAG 453
|||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 442 TTCCGAGGCAATGATTTCGCTTTTTCCATAGCGAGAATGGCAGTGGCTCAGATATGCGAG 501
Query 454 AGTGTTGAGGTTAACTCGTATCAGGAATCACAGACACGCGAGGCCGTGAGGTTTAGTTCT 513
||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||
Sbjct 502 AGTGTTGAGGTTAACCCGTATCAGGAATCACAGACACGTGAGGGTGTGAGGTTTAGTTCT 561
Query 514 TTTCAAGAATCTGCTCTTGAAACACTAACTGATGTAGCGGTTCAGTATATCCAGAGCATT 573
|||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 562 TTTCAAGAATCTGCTCTTGATACACTAACTGATGTTGCGGTTCAGTATATTCAGAGCATT 621
Query 574 GGGAAGACTGCTCATTTGTATACTAACATAGCCGGTAGAGTAGATGGTCATTCTCTGGAT 633
||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||
Sbjct 622 GGGAAGACTGCTCATTTGTATGCTAACTTAGCCGGTAGAGTAGATGGTAATTCTCTGGAC 681
Query 634 ATTGTTCAAGCATTAGAGGATTTGGGATCTGGTTTGGGTTTTGCTGGTGTTTCAGATGCT 693
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 682 ATTCTTCAAGCATTAGAGGATTTGGGATCTGGTTTGGGTTTTGCTGGTGTTTCTGATACT 741
Query 694 GACCATTGTCTTGCTGATTCCGGTGTAGTCAAGGATATTATTCGTTATACTGGAGAAGCG 753
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 742 GACCATTGTCTTGCTGATTCCGGTGTAGTCAAGGATATCATTCGTTATACTGGAGAAGCA 801
Query 754 GAGGAGATGCCGTTTGTTTACTCTCTTCCTCGTTTCCCATTTAGTAAAGAGAAAAAACCT 813
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 GAGGAGATACCGTTTGTTTACTCTCTTCCTCGTTTCCCATTTAGTAAAGAGAAAAAACCT 861
Query 814 GCTCCTAGTTTCTCTGAGGTTGGAGCAGAACCTCCAGATGAACACATTCCTATTTGGCTT 873
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 862 GCTCCTAGTTTCTCTGAGGTTGGAGCAGAACCTCCAGATGAACACATTCCTGTTTGGCTT 921
Query 874 CCTGCATTTCCCGAAACCAAATTGTGTGATCGATCAGAGGAAACTAATGCAGCCACAATC 933
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 922 CCTGCATTTCCCGAAACCGAATTGTGTGATCGATCAGAGGAAACTAATGCAGCCACAATC 981
Query 934 GAAGGAGAAATTCCGAGGAAAGAAAACGGTTCATCTTTACCGAGTATGCAACATTCTTTC 993
|||||||||||||| || |||||||| ||||||||||||||||||||||||| |||||||
Sbjct 982 GAAGGAGAAATTCCTAGTAAAGAAAATGGTTCATCTTTACCGAGTATGCAACTTTCTTTC 1041
Query 994 GATGGTGGT---AGGTTAGATATACATAAATCTCCAAAGGATGTTCGAAAATCACCAAAA 1050
||||||||| |||||||| |||||||||||| ||||||||||| || ||||| || ||
Sbjct 1042 GATGGTGGTGGTAGGTTAGAAATACATAAATCTTCAAAGGATGTTGGAGAATCAACAGAA 1101
Query 1051 GCAGTAGTCGAAGGTAACCCGTTTCTAACTGCGCCTCTTCGAATTGTGGAGAAAAATGTG 1110
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1102 GCAGTAGTCGAAGGTAACCTGTTTCTAACTGCGCCTCTTCGATTTGTGGAGAAAAATGTG 1161
Query 1111 TCACCTGTGGTCCGCCCTTTGGAGATTTCAAATGAAGTTGTTAGGACCAACCACGTTGCT 1170
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1162 TCACCTGTGGTCCGCCCTTTGGAGCTTTCAAATGAAGTTGTTAGGACCAACCACGTTCCT 1221
Query 1171 GATAAGCATATGAGGAACAACCATCACATCCCAGTTCTTGAGGCATCTGCTTCATCGGAT 1230
||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1222 GATAAGCATGTGAGGAACAACCATCACATCCCAATTCTTGAGGCATCTGCTCCATCGGAT 1281
Query 1231 AAAATCAACAACAAGAACTGGTTAGCTGA-ATCCGAGGATGGAGAGAAGGAAGATGTTGC 1289
||||||||||||||||||||||||||| | ||| |||||| |||||||| |||||||||
Sbjct 1282 AAAATCAACAACAAGAACTGGTTAGCT-ATATCAAAGGATGTAGAGAAGGTAGATGTTGC 1340
Query 1290 AAGAAAACAACGAACTTTGGTACGTTTCAAGATTGGGACTACAAAAAGATCTACGTGTTT 1349
||||||| ||| ||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1341 AAGAAAAGAACTAACTTTGGTACGTTTCAAGATAGGGACTACAAAAAGATCTATGTGTTT 1400
Query 1350 GGCAAAAAGTCGGAGCTTCCAGGAAGAGGGTTGGTTTCaagaaaatgaagacaagaggga 1409
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1401 GGCAAAAAATCGGAGCTTCCAGGAAGAGGGTTGGTTTCAAGAAGGTGAAGACAAGAGGGA 1460
Query 1410 gaagaagtcagaaatcaaagaaaagcgcgaaagaaTTGACTCGCAATTGTCAACTCAGAT 1469
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1461 GAAGACGTCAGAAATCAAAGAAAAGCGTGAAAGAATTGACTCGCAATTGTCAACTCAGAT 1520
Query 1470 GTAAAATAGGTATTATGTCATTTTAGAATTTGCAAACAAAATAGCTTTGCATCCTGAGTT 1529
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1521 GTAAAATAGGTATTATGTCATTTTAGAATTTGCAGACAAAATAGCTTTGCATCCTGAGTT 1580
Query 1530 TAGTGATCGTTTGCAACTGGAATACGTTACTTTTTAGGGTAAGAGATTTTTACTAATTCA 1589
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1581 TAGTGATCGTTTGCAACTGGAATACGTTACTTTTTAGGGTAAGAAATGTTTACTAATTCA 1640
Query 1590 AAATGATGGAGAAATGTAGAAGGTTGTTTGGCCT--AACTTGATTTGCAGTGAAATATTA 1647
||| ||||||||||| ||| ||||||||||| | ||||||||||||||||||||||||
Sbjct 1641 AAACGATGGAGAAAT--AGATGGTTGTTTGGCATTTAACTTGATTTGCAGTGAAATATTA 1698
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81375083445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5