BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477449
Length=574
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02180.1 | Symbols: SP1L3 | SPIRAL1-like3 | chr3:404733-4056... 933 0.0
> AT3G02180.1 | Symbols: SP1L3 | SPIRAL1-like3 | chr3:404733-405656
FORWARD LENGTH=675
Length=675
Score = 933 bits (505), Expect = 0.0
Identities = 555/578 (96%), Gaps = 7/578 (1%)
Strand=Plus/Plus
Query 1 TTCCATCTGTTTCTCTTCCTTGATT-TGCGGCCAATCGTAGAACAAGAAGTAGTG--AGC 57
||||||||||||||||||||||||| | ||||||||| ||||||||||||||| | |||
Sbjct 10 TTCCATCTGTTTCTCTTCCTTGATTAT-CGGCCAATCATAGAACAAGAAGTAGAGAAAGC 68
Query 58 AGAAGATACACTACAGAGACAGAGAGAGATCTTGACAAGATGGGTAAAGCAAGAGGAGTG 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 AGAAGATACACTACAGAGACAGAGAGAGATCTTGACAAGATGGGTAAAGCAAGAGGAGTG 128
Query 118 AACAATGGTGTTAATGAAAGTTCTCTCGGTTATCTCTTTGGTTCCGGCCAGCCTTCTTCC 177
|||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 129 AACAATGGCGTGAATGAAAGTTCTCTCGGTTATCTTTTTGGTTCCGGCCAGCCTTCTTCC 188
Query 178 GCTGCTGCTGCCACAATGGGGACTACTACTACAACAACCACCACAACTACCACCGACGGA 237
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 189 GCTGCTGCTGCCACAATGGGGACTACTACTACTACAACCACCACAACTACCACCGATGGG 248
Query 238 ACCGGAGGGAGACCGATAACCACCACGACGACCACAGTCACTGATAACAAGAAGACATCT 297
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 ACCGGAGGCAGACCGATAACCACCACGACGACCACAGTCACTGATAACAAGAAGACATCT 308
Query 298 GCAGGTGTTAGAGGAAGTCCTAATAATTACTTCAGGTCAGAAGGCCAAAACTGTGGAAAC 357
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 309 GCAGGTGTTAGAGGAAGTCCTAATAATTACTTCAGATCAGAAGGCCAAAACTGTGGAAAC 368
Query 358 TTTCTCACGGACAGGCCATCTACTAAGGTTCATGCAGCTCCTGGTGGTGGATCTTCTCTT 417
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 369 TTTCTCACGGACAGGCCATCTACTAAGGTTCATGCAGCTCCTGGTGGAGGATCTTCTCTT 428
Query 418 GATTATCTGTTTGGAGGACCAAGTCCTGCTGGATCTGGAAACAAATGAAGTTACTTGTAG 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 GATTATCTGTTTGGAGGACCAAGTCCTGCTGGATCTGGAAACAAATGAAGTTACTTGTAG 488
Query 478 TTTTTTCCCCACTATTCAGATTTGTGTAAATCATCAAATGTGT-GGCTTTTATATCCCTT 536
|||||| ||||||||||||||| ||||||||||||||| |||| ||||||||| |||||
Sbjct 489 TTTTTTTCCCACTATTCAGATTCGTGTAAATCATCAAAAGTGTTGGCTTTTAT--CCCTT 546
Query 537 TGTGAACCATGTGTGATTCAATTGTGATGTTTGCCTTT 574
||||||| |||||||||||||||||||||||||||||
Sbjct 547 AGTGAACCCTGTGTGATTCAATTGTGATGTTTGCCTTT 584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27578546703
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5