BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg477452

Length=406
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G02190.1 | Symbols:  | Ribosomal protein L39 family protein ...   571    1e-162
  AT2G25210.1 | Symbols:  | Ribosomal protein L39 family protein ...   180    1e-44 


> AT3G02190.1 | Symbols:  | Ribosomal protein L39 family protein 
| chr3:405816-406401 REVERSE LENGTH=404
Length=404

 Score =  571 bits (309),  Expect = 1e-162
 Identities = 382/414 (92%), Gaps = 18/414 (4%)
 Strand=Plus/Plus

Query  1    GAGAAGATTAGGGTTTAAACGCCGCCGTGTTCCGCCGGATCGCCACCGTTGAAGTCAAGA  60
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  1    GAGAAGATTAGGGTTTAAACGCTGCCGTGTTCCGCCGGATCGCCACCGTTGAAGTCAAGA  60

Query  61   TGCCGTCGCACAAGTCGTTCATGATTAAGAAGAAGCTAGGGAAGAAGATGAGACAGAACA  120
            ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct  61   TGCCGTCGCACAAGTCGTTCATGATCAAAAAGAAGCTAGGGAAGAAGATGAGACAGAACA  120

Query  121  GGCCGATCCCTAATTGGATCCGTCTCCGTACCGATAACAGAATCAGGTACAACGCTAAGC  180
            | ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct  121  GACCGATCCCTAATTGGATCCGTCTCCGTACTGATAACAAAATCAGGTACAACGCTAAGC  180

Query  181  GTAGGCACTGGCGCCGTACCAAGCTAGGGTTCTAGAGCCCTCTCGAGTTCACTGCCGTGA  240
            |||||||||||||||||||||||||||| ||||||||| ||||| |   | | |   |||
Sbjct  181  GTAGGCACTGGCGCCGTACCAAGCTAGGATTCTAGAGCACTCTC-A---C-C-G---TGA  231

Query  241  CTCAGATTCGTCCGAGTTTCCTAATTGTTTTTCTTGTATCGGAGTTGTGGTCTTTGACCC  300
            |||||||||||||||||||| |||||| ||| ||||||||||| ||||||||||||||||
Sbjct  232  CTCAGATTCGTCCGAGTTTCTTAATTGCTTT-CTTGTATCGGAATTGTGGTCTTTGACCC  290

Query  301  CTAAA-GTTTTAGTTTTT-GTTAAGGATTTTGTGGCTT-T-GCTATGTTTAAATCTTAGA  356
            ||||| |||||||||||| ||||||||||||||||||| | |||||||||||||||||||
Sbjct  291  CTAAAAGTTTTAGTTTTTTGTTAAGGATTTTGTGGCTTATAGCTATGTTTAAATCTTAGA  350

Query  357  -CTTGCATA-G--TGCATGATTATGAATTATGATAGTTGAATCCTTTCTCCTAC  406
             |||| | | |  |||||||||||||||||| ||||||||||||||||||||||
Sbjct  351  ACTTGAAGAAGAGTGCATGATTATGAATTATAATAGTTGAATCCTTTCTCCTAC  404


> AT2G25210.1 | Symbols:  | Ribosomal protein L39 family protein 
| chr2:10739855-10740552 FORWARD LENGTH=402
Length=402

 Score =  180 bits (97),  Expect = 1e-44
 Identities = 142/164 (87%), Gaps = 1/164 (1%)
 Strand=Plus/Plus

Query  55   TCAAGATGCCGTCGCACAAGTCGTTCATGATTAAGAAGAAGCTAGGGAAGAAGATGAGAC  114
            ||||||||||||||||||||||||||||||||||||||||  | |||||||| ||||| |
Sbjct  69   TCAAGATGCCGTCGCACAAGTCGTTCATGATTAAGAAGAAATTGGGGAAGAAAATGAGGC  128

Query  115  AGAACAGGCCGATCCCTAATTGGATCCGTCTCCGTACCGATAACAGAATCAGGTACAACG  174
            | |||||||| || ||| | ||||| ||||| |||||||| ||||  ||||||||||| |
Sbjct  129  AAAACAGGCCTATTCCTCACTGGATTCGTCTTCGTACCGACAACACCATCAGGTACAATG  188

Query  175  CTAAGCGTAGGCACTGGCGCCGTACCAAGCTAGGGTTCTA-GAG  217
            ||||||||||||| |||||| | |||||||| || ||||| |||
Sbjct  189  CTAAGCGTAGGCATTGGCGCAGAACCAAGCTTGGATTCTAAGAG  232



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19202280118


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5