BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477455
Length=1630
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02210.1 | Symbols: COBL1 | COBRA-like protein 1 precursor |... 2455 0.0
> AT3G02210.1 | Symbols: COBL1 | COBRA-like protein 1 precursor
| chr3:409201-411652 REVERSE LENGTH=1684
Length=1684
Score = 2455 bits (1329), Expect = 0.0
Identities = 1543/1640 (94%), Gaps = 39/1640 (2%)
Strand=Plus/Plus
Query 13 TTTCTTGT-TATTACGTCGAGCTTCTTCAAG-CTTCATCCTTGTCTTGTCACTTGTCAGA 70
|||| ||| ||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 62 TTTC-TGTATATTACGTCGAGCTTCTTC-AGTCTTCATCCTTGTCTTGTCACTTGTCAGA 119
Query 71 GACTTTAAGATTAAAGATCAAAGAAGAAGAACAGTttctctctc-ttcttt-cttcagaa 128
||| |||||||||| |||||| || | ||||||||||| || ||| ||||||||
Sbjct 120 GAC-AGAAGATTAAAG----AAGAAG-AG-GC-GTTTCTCTCTCTTTTTTTGCTTCAGAA 171
Query 129 aaaat-ggg--tttcttgtgttcttcttcttcaatcttcttcaagttcggaatctctata 185
||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 172 AAAATGGGGTTTTTCTTGTGTTCCTCTTCTTCAATCTTCTTCAAGTTCGGAATCTCTATA 231
Query 186 atctttctagtttctttctctGG-TTATATTCCTTCAGAAGCATATGATCCTTTGGACCC 244
||||||||||||||||||||||| ||| | |||||||||||| |||||||||||||||||
Sbjct 232 ATCTTTCTAGTTTCTTTCTCTGGTTTA-ACTCCTTCAGAAGCTTATGATCCTTTGGACCC 290
Query 245 GACTGGGAACATTACTATCAAATGGGATATCATAACCTGGACTGGAGATGGCTATGTGGC 304
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 GAGTGGGAACATTACTGTCAAATGGGATATCATAACCTGGACTGGAGATGGCTATGTGGC 350
Query 305 GACTGTAACGATATATAATTTCCAGCAATATCGACACATTCAAGCTCCAGGTTGGACTCT 364
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 351 GACTGTAACGGTATATAATTTTCAGCAATATCGACACATTCAAGCTCCAGGTTGGACTCT 410
Query 365 TGGATGGTCATGGGCAAAGAGAGAGGTTATATGGGGGATGAATGGAGGACAAACCACAGA 424
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 411 TGGATGGTCATGGGCAAAGAGAGAGGTTATATGGGGAATGAATGGAGGACAAACCACAGA 470
Query 425 ACAAGGAGATTGTTCAAAATTCAAAGGAAACATTCCTCATTGCTGTAAAAAGACACCTTC 484
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 471 ACAAGGAGATTGTTCTAAATTCAAAGGAACCATTCCTCATTGCTGTAAAAAGACACCTTC 530
Query 485 TGTTGTTGATCTCTTACCTGGAACTCCTTACAATCAGCAGATTGCTAATTGTTGCAGAGG 544
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 531 TGTTGTTGATCTCTTACCTGGATCTCCTTACAATCAGCAGATTGCTAATTGTTGCAGAGG 590
Query 545 AGGAGTGCTCAACTCGTGGGCTCAAGATCCCGCAACCGCTGTTTCCGCTTTCCAGCTTAC 604
|| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 591 GGGTGTGCTTAACTCGTGGGCTCAAGATCCCGCAACTGCTGTTTCCGCTTTCCAGCTTAC 650
Query 605 TGTTGGACAAGCTGGAACCACAAATAAGACAGTTAGGGTACCTAAGAATTTCACTCTCAA 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 TGTTGGACAAGCTGGAACCACAAATAAGACAGTTAGGGTACCTAAGAATTTCACTCTCAA 710
Query 665 AGCTCCTGGACCGGGATATACTTGTAGTCCCGCGAAGATTGTAAAACCGACTAGATTCAT 724
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 711 AGCTCCTGGACCGGGATATACTTGTAGCCCCGCGAAGATTGTAAAACCGACTAGATTCAT 770
Query 725 CGGAACTGACAAACGAAGAGTTACACAAGCATTAATGACTTGGAATGTAACTTGCACATA 784
||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 771 CGGTACTGATAAACGAAGAGTTACTCAAGCATTAATGACTTGGAATGTAACTTGCACATA 830
Query 785 CTCGCAGTTCTTAGCTCAGAAAACTCCTACTTGCTGTGTATCGCTTTCATCGTTTTATAA 844
|||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 831 CTCGCAGTTCTTAGCTCAGAAAACACCAACTTGCTGTGTATCTCTTTCATCGTTTTATAA 890
Query 845 CA-GCACAATCGTTTCTTGTCCAACATGCTCTTGTGGATGCCA-AAACACTTCTCAGCCA 902
|| | ||||| |||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 891 CAAG-ACAATAGTTTCTTGTCCAACATGCTCTTGTGGATGC-AGAAACACTTCTCAGCCA 948
Query 903 GGAAATTGTGTAGACCCAAAAGGTCCACGGATAGCATCGGTCATTCCAAATCCAGGGAAG 962
|| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 949 GGGAATTGTGTAGACCCAAAAGGTCCACGGATAGCATCAGTCATTCCAAATCCGGGGAAG 1008
Query 963 AACGCATATATACCACCCCTGGTCCAATGTACAAAGCATATGTGTCCAGTTAGAATCCAC 1022
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 AACGCATATATACCGCCTCTGGTCCAATGTACAAAGCATATGTGTCCAGTTAGAATCCAC 1068
Query 1023 TGGCATGTGAAGGTCAACTACAAACAGTACTGGAGAGTTAAAGTCACCATCACAAATTTC 1082
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 TGGCATGTGAAAGTCAACTACAAACAGTACTGGAGAGTTAAAGTCACCATCACAAATTTC 1128
Query 1083 AACTACAACATGAACTATTCACAGTGGAATCTCGTCGTGCAGCACCCGAATTTCGACAAT 1142
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1129 AACTACAACATGAACTATTCACAGTGGAATCTCGTCGTGCAGCATCCGAATTTCGACAAT 1188
Query 1143 CTCACTCAGACTTTTAGCTTCAACTATAAACC-CTTGACACCTTATGCTTCCATAAATGA 1201
|| ||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||
Sbjct 1189 CTAACTCAGACTTTTAGCTTCAACTATAAACCTCT-GACTCCTTATGCTTCCATAAATGA 1247
Query 1202 TACTGGGATTCTCTGGGGAATAAAGTTCTACAATGATCTGTTGATGCAAGCTGGACCATT 1261
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1248 TACTGGGATTCTCTGGGGAATAAAGTTCTACAATGATCTGTTGATGCAAGCTGGGCCATT 1307
Query 1262 TGGTAATGTACAATCTGAGCTACTTTTCCAAAAAGAAGCATCAGCTTTCACATTTGAGAA 1321
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1308 TGGTAATGTACAATCTGAGCTACTTTTCCAGAAAGAAGCATCAGCTTTCACATTTGAGAA 1367
Query 1322 AGGTTGGGCATTTCCAAGAAGAATTTATTTCAATGGAGATAACTGTGTGATGCCTCCTCC 1381
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1368 AGGTTGGGCGTTTCCAAGAAGAATCTATTTCAATGGAGATAACTGTGTGATGCCTCCTCC 1427
Query 1382 TGATTCTTACCCTTGGCTGCCCAATACCGGCTCGCATAAATCAATCGGTTCTCTGTTTGC 1441
|||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||
Sbjct 1428 TGATTCTTACCCTTGGCTGCCCAATACCGGCTCGCACAAATCAGTCGGTTCCCTGTTTGC 1487
Query 1442 AGCAATCGCCTTGTTACTGACTCTGTTCCTACATGGAAACTTGTAAGAATCATTAAGTGT 1501
|||||| ||||||||||||| | |||||||||||||||||||||||||||||| ||||||
Sbjct 1488 AGCAATGGCCTTGTTACTGATTGTGTTCCTACATGGAAACTTGTAAGAATCATCAAGTGT 1547
Query 1502 AGAATGTAGCTTATGATGCAGTTTTTTGAACTGATA-A-----TGA-GAGA-A-TTGGTA 1552
||||| | ||| || |||||||||| ||||||||| | | | |||| | ||||||
Sbjct 1548 AGAAT-T--CTTCTGCTGCAGTTTTTCGAACTGATATAACCCATCAAGAGAGAGTTGGTA 1604
Query 1553 GCTTAGTTCTTAGTGTTCCCTC--GTCTGTCCTCTTCCTGTACAACGCTTTAATTTTAGT 1610
|||||||| || |||||| ||| |||||||||||||||||||||||||||||| ||||
Sbjct 1605 GCTTAGTTTTTTGTGTTCTCTCTTGTCTGTCCTCTTCCTGTACAACGCTTTAATATTAGA 1664
Query 1611 TTGTTAACTAAATCCCCTTG 1630
| |||||||| |||||||||
Sbjct 1665 TGGTTAACTAGATCCCCTTG 1684
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80521674180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5