BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477457
Length=888
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02220.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 1254 0.0
> AT3G02220.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF2039 (InterPro:IPR019351);
Has 215 Blast hits to 215 proteins in 94 species: Archae
- 2; Bacteria - 2; Metazoa - 125; Fungi - 4; Plants - 38;
Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
| chr3:412069-413634 REVERSE LENGTH=923
Length=923
Score = 1254 bits (679), Expect = 0.0
Identities = 792/845 (94%), Gaps = 13/845 (2%)
Strand=Plus/Plus
Query 48 TTTTCTCCGATCTACATTCACAGCTCATAGAAAATGGGCTCACGGCAGGGACCACCGAAG 107
|||| ||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 66 TTTTTTCCGATCTAAATTCACAGCTCATCGAAAATGGGCTCACGGCAAGGACCACCGAAG 125
Query 108 CATCAGAACAAATTCGCCTGGGTTCCCAAAGCCGGCGTCAAGATCAACGAAACGGAAGTG 167
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 CATCAGAACAAATTCGCCTGGGTTCCCAAAGCCGGCGTCAAGATCAACGAAACGGAAGTC 185
Query 168 GGCGGGAGATTTAGACCATTATCAGAGATTACTGGAGTTTGCTATCGATGTCGAGAGCAG 227
||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 186 GGCGGGAGATTTAGACCATTATCCGAGATTACCGGAGTTTGCTACCGATGTCGAGAGCAG 245
Query 228 ATCGCTTGGAAACGCAAATACGGCAAATACAAAACCCTAACTGAAGCCACCAAATGTCAG 287
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 ATCGCCTGGAAACGCAAATACGGCAAATACAAAACCCTAACTGAAGCCACCAAATGTCAG 305
Query 288 AAGTGTACTAAGCGAAATGTTCGTCAAGCATACCATAAGTTATGCCCTGGTTGTGCCAAG 347
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 AAGTGTACAAAGCGAAATGTTCGTCAAGCATACCATAAGTTATGCCCTGGTTGTGCCAAG 365
Query 348 GAGCAGAAGGTGTGTGCAAAGTGTTGTTCCC-GTGTTGATCAAATCATTGGAAGAGATAT 406
||||| ||||||||||||||||||||| | |||||||||||||| |||||||||||||
Sbjct 366 GAGCAAAAGGTGTGTGCAAAGTGTTGT-CAAAGTGTTGATCAAATCCTTGGAAGAGATAT 424
Query 407 TTACGAGGTTGAAGCTGAGCAGAAGATGCTTGATGAGACTATCAAGAATGCTAGGGAAAG 466
|||||| || || ||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 425 TTACGAAGTAGAGGCTGAACAGAAGCTGCTTGATGAGACTATCAAGAATGCTAGGGAAAG 484
Query 467 GGATCGAAGGACGCTATTACGTGCTATGAACAAAGATAACAAACCGAACAAATCAGATGA 526
||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 485 AGATCGAAGGACCCTATTACGTGCTATGAACAAAGATAACAAACCAAATAAATCAGATGA 544
Query 527 AGAAGCGACAAGGAGTGATAGCAGCAAGGTTGGTGATGTGTTTCCCTCAACTTCCCTTGA 586
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 AGAAGCGTCAAGGAGTGATAGCAGCAAGGTTGGTGATGTGTTTCCCTCAACTTCCCTTGA 604
Query 587 AGAATATGCAAACAAGTCGGGAAGAGTTAGCAGGATTATTGGTCATGGTAGTGTACCTGA 646
|||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||
Sbjct 605 AGAATATGCAAACAAGTCCGGAAGAGTTAGCGGGATTATTGGTCATGGTAGTGTGCCTGA 664
Query 647 TCATGGCCatgatgatgatgatgctagtggacctgaatcagatgaggatcacaatgattg 706
||||| ||||||||||| |||||||||||||||||||||||||| |||||| |||
Sbjct 665 TCATGCCCATGATGATG------CTAGTGGACCTGAATCAGATGAGGATGACAATG-TTG 717
Query 707 -tgatgatgaGCATGATTTGCGCGAAGACAGTGATGCAAATGAGCCATCTCAACTGTAGA 765
||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||
Sbjct 718 GTGATGATGAGCATGATTTGCGCGAAGACAGTGATGAAAATGAGCAATCTCAACTGCAGA 777
Query 766 AGTAAACCCATGTTTGGTTGTACTACTGTCAATTTTGATAGGATTGTGAGATTTTGCAAA 825
| ||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 778 AATAAACTCATGTTTGGTTGTACTACTGTCAATTTGG-TAGGATTGTGAGATTTTGCAAG 836
Query 826 ACTGATTATTCCTGTTGTTTTGATAAA-CTTT-ACTTTGCCACCTACAATGCAAGACTAG 883
|||| |||||||||||||||||||||| |||| |||| | ||||| ||||||||||||||
Sbjct 837 ACTGTTTATTCCTGTTGTTTTGATAAAACTTTTACTTGGTCACCTGCAATGCAAGACTAG 896
Query 884 CAAAG 888
|||||
Sbjct 897 CAAAG 901
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43352068861
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5