BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477458
Length=1381
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02230.1 | Symbols: RGP1, ATRGP1 | reversibly glycosylated p... 2379 0.0
AT5G15650.1 | Symbols: RGP2, ATRGP2 | reversibly glycosylated p... 1314 0.0
AT3G08900.1 | Symbols: RGP3, RGP | reversibly glycosylated poly... 717 0.0
> AT3G02230.1 | Symbols: RGP1, ATRGP1 | reversibly glycosylated
polypeptide 1 | chr3:415393-417547 FORWARD LENGTH=1387
Length=1387
Score = 2379 bits (1288), Expect = 0.0
Identities = 1357/1389 (98%), Gaps = 10/1389 (1%)
Strand=Plus/Plus
Query 1 CCATCACCTCCGATCTCAAATCTCAC-AT-ATTTCTCTCC-AATTCTCTTCTCTCTGAAT 57
|||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||
Sbjct 1 CCATCACCTCCGATCTCAAATCTCACAATCTTTTCTCTCCAAATTCTCTTCTCTCTGAAT 60
Query 58 CAAT-CAATCATGGTTGAGCCGGCGAATACCGTTGGAATTCCGGTGAATCACATTCCATT 116
|||| |||||||||||||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 61 CAATCCAATCATGGTTGAGCCGGCGAACACCGTTGGAATTCCGGTGAACCACATCCCATT 120
Query 117 GTTGAAGGATGAGCTCGATATCGTGATCCCCACGATCCGTAACCTCGATTTCCTGGAGAT 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTTGAAGGATGAGCTCGATATCGTGATCCCCACGATCCGTAACCTCGATTTCCTGGAGAT 180
Query 177 GTGGAGGCCTTTTCTTCAGCCTTACCATCTGATTATCGTCCAAGATGGAGATCCATCGAA 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTGGAGGCCTTTTCTTCAGCCTTACCATCTGATTATCGTCCAAGATGGAGATCCATCGAA 240
Query 237 GACCATTGCTGTCCCTGAAGGGTTCGATTACGAACTCTACAACAGGAACGACATCAACCG 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GACCATTGCTGTCCCTGAAGGGTTCGATTACGAACTCTACAACAGGAACGACATCAACCG 300
Query 297 TATCCTTGGTCCTAAAGCTTCCTGCATTTCCTTCAAGGACTCTGCTTGTCGTTGCTTCGG 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TATCCTTGGTCCTAAAGCTTCCTGCATTTCCTTCAAGGACTCTGCTTGTCGTTGCTTCGG 360
Query 357 CTACATGGTCTCCAAGAAGAAGTACATCTTCACTATTGACGACGATTGCTTCGTTGCCAA 416
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 361 CTACATGGTCTCCAAGAAGAAGTACATCTTCACTATTGATGACGATTGCTTCGTTGCTAA 420
Query 417 GGATCCATCTGGAAAAGCTGTGAACGCTCTTGAGCAACACATCAAGAACCTTCTCTGCCC 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGATCCATCTGGAAAAGCTGTGAACGCTCTTGAGCAACACATCAAGAACCTTCTCTGCCC 480
Query 477 ATCAACTCCATTTTTCTTCAACACCTTGTACGACCCATACCGTGAAGGTGCTGACTTCGT 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATCAACTCCATTTTTCTTCAACACCTTGTACGACCCATACCGTGAAGGTGCTGACTTCGT 540
Query 537 CCGTGGATACCCTTTCAGTCTCCGTGAGGGTGTTTCCACCGCTGTTTCTCACGGTCTGTG 596
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 541 CCGTGGATACCCTTTCAGTCTCCGTGAGGGTGTTTCCACCGCTGTTTCCCACGGTCTGTG 600
Query 597 GCTCAACATCCCTGATTACGATGCCCCTACCCAACTTGTGAAGCCTAAGGAAAGGAACAC 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GCTCAACATCCCTGATTACGATGCCCCTACCCAACTTGTGAAGCCTAAGGAAAGGAACAC 660
Query 657 AAGGTATGTGGATGCTGTCATGACCATCCCAAAGGGAACACTCTTCCCTATGTGTGGCAT 716
||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 661 AAGGTATGTGGATGCTGTCATGACCATCCCAAAGGGAACTCTTTTCCCTATGTGTGGTAT 720
Query 717 GAACTTGGCCTTTGACCGTGAGCTCATTGGTCCGGCTATGTACTTTGGTCTCATGGGTGA 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GAACTTGGCCTTTGACCGTGAGCTCATTGGTCCGGCTATGTACTTTGGTCTCATGGGTGA 780
Query 777 TGGTCAGCCTATTGGTCGCTACGACGATATGTGGGCTGGATGGTGTATCAAGGTGATCTG 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TGGTCAGCCTATTGGTCGCTACGACGATATGTGGGCTGGATGGTGTATCAAGGTGATCTG 840
Query 837 TGACCATTTGGGATTGGGAGTGAAGACAGGTTTGCCCTACATTTACCACAGCAAAGCCAG 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TGACCATTTGGGATTGGGAGTGAAGACAGGTTTGCCCTACATTTACCACAGCAAAGCCAG 900
Query 897 TAACCCGTTTGTGAACTTGAAGAAGGAGTACAAGGGAATCTTCTGGCAGGAGGATATCAT 956
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CAACCCGTTTGTGAACTTGAAGAAGGAGTACAAGGGAATCTTCTGGCAGGAGGATATCAT 960
Query 957 TCCTTTCTTCCAGAGCGCAAAGCTCACGAAAGAAGCTGTGACAGTTCAACAATGCTACAT 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TCCTTTCTTCCAGAGCGCAAAGCTCACGAAAGAAGCTGTGACAGTTCAACAATGCTACAT 1020
Query 1017 GGAGCTGTCCAAGTTGGTGAAGGAGAAGCTAAGCCCCATTGATCCTTACTTTGACAAGCT 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GGAGCTGTCCAAGTTGGTGAAGGAGAAGCTAAGCCCCATTGATCCTTACTTTGACAAGCT 1080
Query 1077 TGCAGACGCTATGGTCACCTGGATTGAAGCTTGGGATGAGCTTAACCCACCCACTAAAGC 1136
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TGCAGATGCTATGGTCACTTGGATTGAAGCTTGGGATGAGCTTAACCCACCCACTAAAGC 1140
Query 1137 TTGAGCAGCaaaaaaaCCACCACCGCAGTTTTGGTTATTAGCTCAATC-TATCATCTATC 1195
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1141 TTGAGCAGCAAAAAAACCACCACCGCAGTTTTGGTTATTAGCTCAA-CATATCATCTATC 1199
Query 1196 TTCTCTgttttgtttttgttttatcttttctcaa-ttttccggcgattattcagttcgtt 1254
||||| |||||||||||||||| ||||||||||| ||||||||||||| |||||||||||
Sbjct 1200 TTCTCCGTTTTGTTTTTGTTTTGTCTTTTCTCAAATTTTCCGGCGATTCTTCAGTTCGTT 1259
Query 1255 tttAAGTCGCTGGAGTTTATTCAAATAGTGA-TGGTGTAGTTCTATTTATGACCGAGACA 1313
||||||| || |||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1260 TTTAAGTTGCCGGAGTTTATTTAAATAGTGAATGGTGTAGTTCTATTTATGACCGAGACA 1319
Query 1314 ATCTCTCCTTTGAGGTTTTTCGTTTTTGTTTCAATAATAAAATCAT-ATATCCCTTAGTC 1372
||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1320 ATCTCTCTTTTGAGGTTTTTCGTTTTTGTTTCAATAATAAAAA-ATCATATCCCTTAGTC 1378
Query 1373 TTTGGTGTC 1381
||||||||
Sbjct 1379 GTTGGTGTC 1387
> AT5G15650.1 | Symbols: RGP2, ATRGP2 | reversibly glycosylated
polypeptide 2 | chr5:5092157-5094494 FORWARD LENGTH=1530
Length=1530
Score = 1314 bits (711), Expect = 0.0
Identities = 950/1067 (89%), Gaps = 10/1067 (1%)
Strand=Plus/Plus
Query 66 CATGGTTGAGCCGGCGAATACCGTTGGAATTCCGGTGAATCAC-ATTCCATTGTTGAAGG 124
||||||||||||||||||||| ||||| |||||||||| | | | ||| ||| |||| |
Sbjct 46 CATGGTTGAGCCGGCGAATACTGTTGGTCTTCCGGTGAA-CCCGACTCCGTTGCTGAAAG 104
Query 125 ATGAGCTCGATATCGTGATCCCCACGATCCGTAACCTCGATTTCCTGGAGATGTGGAGGC 184
||||||||||||||||||| || || ||| | |||||||||||||| |||||||||||||
Sbjct 105 ATGAGCTCGATATCGTGATTCCGACTATCAGAAACCTCGATTTCCTCGAGATGTGGAGGC 164
Query 185 CTTTTCTTCAGCCTTACCATCTGATTATCGTCCAAGATGGAGATCCATCGAAGACCATTG 244
||||||||||||||||||||||||| |||||||| || |||||||||||||||| | |
Sbjct 165 CTTTTCTTCAGCCTTACCATCTGATCATCGTCCAGGACGGAGATCCATCGAAGAAGA-TC 223
Query 245 C-TGTCCCTGAAGGGTT-CGATTACGAACTCTACAACAGGAACGACATCAACCGTATCCT 302
| |||||||||| |||| ||| ||||| |||||||||||||||||||| ||||| |||||
Sbjct 224 CATGTCCCTGAA-GGTTACGACTACGAGCTCTACAACAGGAACGACATTAACCGAATCCT 282
Query 303 TGGTCCTAAAGCTTCCTGCATTTCCTTCAAGGACTCTGCTTGTCGTTGCTTCGGCTACAT 362
|| ||||| ||||| || || || || ||||| ||||||||||| ||||| || |||||
Sbjct 283 CGGACCTAAGGCTTCTTGTATCTCGTTTAAGGATTCTGCTTGTCGATGCTTTGGGTACAT 342
Query 363 GGTCTCCAAGAAGAAGTACATCTTCACTATTGACGACGATTGCTTCGTTGCCAAGGATCC 422
||| || ||||||||||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct 343 GGTGTCTAAGAAGAAGTATATCTTCACCATTGATGACGATTGCTTCGTTGCCAAGGATCC 402
Query 423 ATCTGGAAAAGCTGTGAACGCTCTTGAGCAACACATCAAGAACCTTCTCTGCCCATCAAC 482
||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 403 ATCAGGCAAAGCAGTGAACGCTCTTGAGCAACACATCAAGAACCTTCTCTGCCCATCGTC 462
Query 483 TCCATTTTTCTTCAACACCTTGTACGACCCATACCGTGAAGGTGCTGACTTCGTCCGTGG 542
||| |||||||||||||||||||| || || ||||||||||||||||| |||||||||||
Sbjct 463 TCCCTTTTTCTTCAACACCTTGTATGATCCTTACCGTGAAGGTGCTGATTTCGTCCGTGG 522
Query 543 ATACCCTTTCAGTCTCCGTGAGGGTGTTTCCACCGCTGTTTCTCACGGTCTGTGGCTCAA 602
||||||||||||||||||||| ||||||||||| |||||||| || ||||| ||||||||
Sbjct 523 ATACCCTTTCAGTCTCCGTGAAGGTGTTTCCACTGCTGTTTCCCATGGTCTTTGGCTCAA 582
Query 603 CATCCCTGATTACGATGCCCCTACCCAACTTGTGAAGCCTAAGGAAAGGAACACAAGGTA 662
||||||||| ||||||||||| |||||||| |||||||||||||| |||||||| |||||
Sbjct 583 CATCCCTGACTACGATGCCCCGACCCAACTCGTGAAGCCTAAGGAGAGGAACACCAGGTA 642
Query 663 TGTGGATGCTGTCATGACCATCCCAAAGGGAACACTCTTCCCTATGTGTGGCATGAACTT 722
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 643 TGTGGATGCTGTCATGACCATCCCAAAGGGAACACTTTTCCCAATGTGTGGTATGAACTT 702
Query 723 GGCCTTTGACCGTGAGCTCATTGGTCCGGCTATGTACTTTGGTCTCATGGGTGATGGTCA 782
||| ||||||||||| | ||||| |||||||||||||||||||||||||||||||||||
Sbjct 703 GGCTTTTGACCGTGATTTGATTGGCCCGGCTATGTACTTTGGTCTCATGGGTGATGGTCA 762
Query 783 GCCTATTGGTCGCTACGACGATATGTGGGCTGGATGGTGTATCAAGGTGATCTGTGACCA 842
|||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 763 GCCTATTGGTCGTTACGACGATATGTGGGCTGGTTGGTGCATCAAGGTGATCTGTGACCA 822
Query 843 TTTGGGATTGGGAGTGAAGACAGGTTTGCCCTACATTTACCACAGCAAAGCCAGTAACCC 902
||| | |||||||||||||| ||||| || || || |||||||||||||| || |||||
Sbjct 823 CTTGAGCTTGGGAGTGAAGACCGGTTTACCGTATATCTACCACAGCAAAGCGAGCAACCC 882
Query 903 GTTTGTGAACTTGAAGAAGGAGTACAAGGGAATCTTCTGGCAGGAGGATATCATTCCTTT 962
||||| ||| |||||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 883 TTTTGTTAACCTGAAGAAGGAATACAAGGGAATCTTCTGGCAGGAGGAGATCATTCCGTT 942
Query 963 CTTCCAGAGCGCAAAGCTCA-CGAAAGAAGCTGTGACAGTTCAACAATGCTACATGGAGC 1021
|||||||| ||||||||| | |||||||||| || || ||||| ||||||||||| ||||
Sbjct 943 CTTCCAGAACGCAAAGCT-ATCGAAAGAAGCAGTAACTGTTCAGCAATGCTACATTGAGC 1001
Query 1022 TGTCCAAGTTGGTGAAGGAGAAGCTAAGCCCCATT-GATCCTTACTTTGACAAGCTTGCA 1080
| || ||| |||| ||||||||| | ||| || || || || ||||||||||||||||||
Sbjct 1002 TCTCAAAGATGGTCAAGGAGAAGTTGAGCTCC-TTAGACCCGTACTTTGACAAGCTTGCA 1060
Query 1081 GACGCTATGGTCACCTGGATTGAAGCTTGGGATGAGCTTAACCCACC 1127
|| || ||||| || ||||||||||||||||||||||||||||||||
Sbjct 1061 GATGCCATGGTTACATGGATTGAAGCTTGGGATGAGCTTAACCCACC 1107
> AT3G08900.1 | Symbols: RGP3, RGP | reversibly glycosylated polypeptide
3 | chr3:2708086-2709714 REVERSE LENGTH=1350
Length=1350
Score = 717 bits (388), Expect = 0.0
Identities = 837/1050 (80%), Gaps = 45/1050 (4%)
Strand=Plus/Plus
Query 95 TTCCGGTGAATCACATTCCATTGTTGAAGGATGAGCTCGATATCGTGATCCCCACGATCC 154
|||| ||||| | || ||| ||||||| |||||||| || || ||||| || ||||| |
Sbjct 18 TTCC-GTGAAACCCACGCCAATGTTGAAAGATGAGCTAGACATTGTGATACCTACGATTC 76
Query 155 GTAACCTCGATTTCCTGGAGATGTGGAGGCCTTTTC-TTCAGCCTTACCATCTGATTATC 213
| |||||||| ||||| ||||||||| | || |||| || ||| || ||| |||| ||
Sbjct 77 GAAACCTCGACTTCCTTGAGATGTGGCGACC-TTTCTTTGAGCAGTATCATTTGATCATT 135
Query 214 GTCCAAGATGGAGATCCATCG-AAGACCAT-TGCTGTCCCTGAAGGGTTCGATTACGAAC 271
|| |||||||| ||||| ||| ||| ||| | | || | |||||| || ||||| |
Sbjct 136 GTTCAAGATGGTGATCCTTCGAAAG-TCATCAAC-ATTCCAGTAGGGTTTGACTACGAGC 193
Query 272 TCTACAACAGGAACGACATCAACCGTATCCTT-GGTCCTAAAGCTTCCTGCATTTCCTTC 330
|||||||||||||||||||||| || || ||| ||||| || || || ||||||||||||
Sbjct 194 TCTACAACAGGAACGACATCAATCGAAT-CTTGGGTCCCAAGGCCTCTTGCATTTCCTTC 252
Query 331 AAGGACTCTGCTTGTCGTTGCTTCGGCTACATGGTCTCCAAGAAGAAGTACATCTTCACT 390
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||
Sbjct 253 AAGGACTCTGCTTGTCGTTGCTTCGGTTACATGGTCTCCAAAAAGAAGTACATCTACACC 312
Query 391 ATTGACGACGATTGCTTCGTTGCCAAGGATCCATCTGGAAAAGCTG-TGAACGCTCTTGA 449
||||| || |||||||| ||||| ||||||||| | || |||| | | || || |||||
Sbjct 313 ATTGATGATGATTGCTTTGTTGCAAAGGATCCAACAGGGAAAGA-GATCAATGCGCTTGA 371
Query 450 GCAACACATCAAGAACCT-TC-TCTGCCCATCAACTCCATTTTTCTTCAACAC-CTTGTA 506
||| || ||||||||||| | ||| || ||||||||| |||||| ||||| ||| ||
Sbjct 372 GCAGCATATCAAGAACCTCTTATCT-CC-ATCAACTCCGCATTTCTTTAACACACTT-TA 428
Query 507 CGACCCATACCGTGAAGGTGCTGACTTCGTCCGTGGATACCCTTTCAGTCTCCGTGAGGG 566
|| |||||| | || || || ||||| || |||||||||||||||||| | || || ||
Sbjct 429 TGATCCATACAGAGATGGGGCAGACTTTGTTCGTGGATACCCTTTCAGTATGCGCGAAGG 488
Query 567 TGTT-TCCACCGCTGTTTCTCACGGTCTGTGGCTCAACATCCCTGATTACGATGC-CCCT 624
|| | ||||| || ||||| || || ||||||||||| ||||| || ||||| |||
Sbjct 489 TGCCATA-ACCGCGGTCTCTCATGGCCTCTGGCTCAACATTCCTGACTATGATGCTCCC- 546
Query 625 ACCCAACTTGTGAAGCCTAA-G-GAAAGGAACACAAGGTATGTGGATGCTGTCATGACCA 682
|| || |||||||| ||| | |||| || | |||||||| ||||| ||||||||||
Sbjct 547 ACTCAGCTTGTGAAACCTCTTGAGAAA--AATTCCAGGTATGTTGATGCAGTCATGACCA 604
Query 683 T-CCCAAAGGGAACACTCTTCCCTATGTGTGGCATGAAC-TTGGCCTTTGACCGTGAGCT 740
| |||||||| ||| || || ||||||||||| |||||| ||| | ||||||||||||||
Sbjct 605 TTCCCAAAGG-AACTCTTTTTCCTATGTGTGGTATGAACCTTG-CTTTTGACCGTGAGCT 662
Query 741 CATTGGTCCGGCTATGTACTTTGGTCTCATGGGTGATGGTCAGCCTATTGGTCGCTACGA 800
||||||||||||||||||||||| || ||||||||||| ||||| ||||| ||||| ||
Sbjct 663 GATTGGTCCGGCTATGTACTTTGGGCTTATGGGTGATGGACAGCCAATTGGACGCTATGA 722
Query 801 CGATATGTGGGCTGGATGGTGTATCAAGGTGATCTGTGACCATTTGGGATTGGGAGTGAA 860
||| ||||||||||| |||||| |||||||||| |||||||| |||||| |||||||||
Sbjct 723 CGACATGTGGGCTGGTTGGTGTGTCAAGGTGATATGTGACCACATGGGATGGGGAGTGAA 782
Query 861 GACAGGTTTGCCCTACATTTACCACAGCAAAGCCAGTAACCCGTTTGTGAACTTGAAGAA 920
||| |||||||| ||||| | |||||||||||||| ||||| || |||||| |||| ||
Sbjct 783 GACGGGTTTGCCTTACATATGGCACAGCAAAGCCAGCAACCCATTCGTGAACCTGAAAAA 842
Query 921 GGAGTACAAGGGAATCTTCTGGCAGGAGGATATC-ATTCCTTTCTTCCAGAGC-GCAAAG 978
||| ||||| ||||| || |||||||| || | ||||| ||||| || | | | |
Sbjct 843 GGAATACAACGGAATATTTTGGCAGGAAGAGG-CGATTCCGTTCTTTCA-ATCCGTGACT 900
Query 979 CT-CACGAAAGAA-GCTGTGACAGTTCAACAATGCTACATGGAGCTGTCCAAGTTGGTGA 1036
|| | | ||||| || | | || || ||||||||| | |||||| ||||| | ||||
Sbjct 901 CTTC-CTAAAGAGTGCACTT-CGGTGCAGCAATGCTACCTCGAGCTGGCCAAGCTCGTGA 958
Query 1037 -AGGAGAAGCTAAGCCCCATTGATCCTTACTT--TGACAAGCTTGCAGAC-GCTATGGTC 1092
|| |||| || | ||||||||||||| | ||| |||||| || | ||||||
Sbjct 959 GAG-AGAAACTTGGGAAGGTTGATCCTTACTTCATCACA--CTTGCA-ACTGGAATGGTC 1014
Query 1093 ACCTGGATTGAAGCTTGGGATGAGCTTAAC 1122
|||||||| ||||||||||| |||||||||
Sbjct 1015 ACCTGGATCGAAGCTTGGGAGGAGCTTAAC 1044
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68021738475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5