BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477461
Length=1277
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02270.1 | Symbols: | Trimeric LpxA-like enzyme | chr3:4489... 1354 0.0
AT4G18300.1 | Symbols: | Trimeric LpxA-like enzyme | chr4:1011... 309 4e-83
> AT3G02270.1 | Symbols: | Trimeric LpxA-like enzyme | chr3:448977-451007
REVERSE LENGTH=2031
Length=2031
Score = 1354 bits (733), Expect = 0.0
Identities = 931/1023 (91%), Gaps = 28/1023 (3%)
Strand=Plus/Plus
Query 1 ATGGCTGCTCGGAAGAAACGTGCGGCGAAGAGTTCAGAGGATTCAGAGGAGGAACAGAGT 60
|||||| |||| ||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1 ATGGCTTCTCGTAAGAAACGTGCTGCGAAGATTTCAGAGGATTCAGAGGAGGAACAGAGT 60
Query 61 CGTCGTCAACGGTTTCAAGCCATTCTTCTAGCTGACAACTTCACCACGAAACTTCTTCCC 120
|| ||||||||||| |||||||||||||| ||||||| ||| |||||||||| ||||||
Sbjct 61 CGCCGTCAACGGTTACAAGCCATTCTTCTCGCTGACAGTTTCGCCACGAAACTCCTTCCC 120
Query 121 TTAACCTTAGAACGCCCCAATGTATTGTTACCGCTAGTGAATGTTCCCATGATCGATTAC 180
||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||
Sbjct 121 TTAACCTTAGAACGCCCCAATGTCTTGTTACCGCTAGTGAATATTCCCATGATTGATTAC 180
Query 181 ACCTTAGCTTGGCTCGAATCTGCTGGAATAGAAGAAGTTTTCGTCTTTTGCTCGACGCAA 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 181 ACCTTAGCTTGGCTCGAATCTGCTGGCATAGAAGAAGTTTTCGTCTTTTGCTCGATGCAA 240
Query 241 GTCATCGATTATCTGAAGAACTCTGGA-TGGTACTCGCACAAAGACTTTACGGTGAAAAC 299
||||||||||||||||| |||||| || |||||||||||||||||||||||||| |||||
Sbjct 241 GTCATCGATTATCTGAACAACTCT-GACTGGTACTCGCACAAAGACTTTACGGTAAAAAC 299
Query 300 GATAGAGTCACCGCACAAA-TCCACTAGTGCTGGTGATGCTTTGCGTTATATCTATGAGC 358
|||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 300 TATAGAGTCACCGCA-AAACTCCACCAGTGCTGGTGATGCTTTGCGTTATATCTACGAGC 358
Query 359 AACAGATTGACACGTCTCAGATTCAAGATGACGACTTTGTTCTTGTTAGTGGAGGTATTG 418
| |||||||| |||||||||||||||| | |||||||||||||||| |||| ||||||
Sbjct 359 AGCAGATTGAGACGTCTCAGATTCAAG--G-TGACTTTGTTCTTGTTAATGGATGTATTG 415
Query 419 TGAGTAACATGCCCCTAACGCAGCTGATTCAAGAACACAGAGATAGAAAGAAGAAAGATG 478
| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 416 TTAGTAACATGCCCCTGACGCAGCTGATTCAAGAACACAGAGATAGAAAAAAGAAAGATG 475
Query 479 ATAAAGCTATCATGACTATGGTTATCA--CGG--A-TCATCA---AT--TC---T-T-CA 523
| ||||||||||||||||||||||||| | | | |||||| || || | | ||
Sbjct 476 AGAAAGCTATCATGACTATGGTTATCAGACAGTCACTCATCACCGATCATCAACTCTTCA 535
Query 524 TCGGTGTAAATCCTTTAACAAAACAACTTCTTTATTACAATGAGGACAAGATCTTCTTGG 583
||| ||||||||||||||||||||| |||||||||||| |||||||||| |||| ||| |
Sbjct 536 TCGCTGTAAATCCTTTAACAAAACAGCTTCTTTATTACGATGAGGACAACATCTGCTTCG 595
Query 584 ATACGTCATTGATGGATCGTAATCCATCTGTTTTGCTATGTAGTGATATGCAGGATTGTT 643
||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 596 ATAAATCATTGCTGGATCGTAATCCATCTGTTTTGTTATGTAGTGATATGCAGGATTGTT 655
Query 644 ACATTGACATATGTTCTCTTGAGATGCTTAGTC-ACTTTGTGGATAACTGCGATTACCAA 702
||||||||||||||||||||||| ||||||||| | ||||||||||||| ||||||||||
Sbjct 656 ACATTGACATATGTTCTCTTGAGGTGCTTAGTCTA-TTTGTGGATAACTTCGATTACCAA 714
Query 703 CATCTGCGTTGTGATTTTGTGGAAGGTGTTCTTGCTGATGATATTA-CGGGTTTCAAGAT 761
||| ||||||||||||||||||||||||||||||||||||| |||| ||| || ||||||
Sbjct 715 CATATGCGTTGTGATTTTGTGGAAGGTGTTCTTGCTGATGACATTATCGG-TTACAAGAT 773
Query 762 TTTCACTCATGAGATCAGCTCGTGTTATGCTGCTAGGATTGAAAACTTCCGGAGCTATGA 821
||||||||||||||| ||||||||||||||| ||||||||||||| ||| ||||||||||
Sbjct 774 TTTCACTCATGAGATTAGCTCGTGTTATGCTTCTAGGATTGAAAATTTCAGGAGCTATGA 833
Query 822 CATGGTTAGCAAGGATATAATCCAGAGGCGGACATTCCCGTATGTACCGGATATGAAGTT 881
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 CATGGTGAGCAAGGATATAATCCAGAGGCGGACATTCCCGTATGTACCGGATATGAAGTT 893
Query 882 GAGCGGAAATCGGTCTCTTAAGCTCGGGAGACAAGGGAGCTATAAGGCTTCTGATGCTA- 940
||||||||||| |||||||||||| ||||||||||| ||| ||||||||||||||||
Sbjct 894 CAGCGGAAATCGCACTCTTAAGCTCGAGAGACAAGGGATCTACAAGGCTTCTGATGCTAC 953
Query 941 TCCGGTCACCATCTGTTCATGTTGGAGATTCCTCTGTCATTGGACATGCCAAAAAGATTG 1000
|| | | |||||||| ||||||||||| ||||| ||||||||||||||||| ||| ||||
Sbjct 954 TCAGTT-ACCATCTGCTCATGTTGGAGCTTCCTATGTCATTGGACATGCCACAAATATTG 1012
Query 1001 GGA 1003
|||
Sbjct 1013 GGA 1015
Score = 291 bits (157), Expect = 2e-77
Identities = 195/213 (92%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 1004 CAATATTCTACTCTATGATGAAACTAGCAGCTGA-TACTCCACATAGCTCTGA-TATTAA 1061
|||||||||||||||||||||||||||||| | | |||||||||||||||| | || | |
Sbjct 1655 CAATATTCTACTCTATGATGAAACTAGCAG-TTAGTACTCCACATAGCTCT-ATTAATGA 1712
Query 1062 CTTGTATAAAAATACGGCGAGTATCATTACTCGATGGAAGGGACTTCTTGGGTTCTATGT 1121
|||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1713 CTTGTATAGAAACGCATCGAGTATCATTACTCGATGGAAGGGACTTCTTGGGTTCTATGT 1772
Query 1122 AAAGCAAATTGACGAACAGATAGAAGTAATATCGAGATTGGAAGAGATGTGTCAAGAATC 1181
|||| ||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1773 AAAGAAAAGTGATGAACAGATAGAAGTAATATCGAGATTGGAAGAGATGTGTGAAGAATC 1832
Query 1182 TGCGCATGAGTTGGGACCTTTGTTTGCTCatat 1214
||| |||||||||||| ||||||||||||||||
Sbjct 1833 TGCTCATGAGTTGGGAACTTTGTTTGCTCATAT 1865
> AT4G18300.1 | Symbols: | Trimeric LpxA-like enzyme | chr4:10118852-10120981
FORWARD LENGTH=2130
Length=2130
Score = 309 bits (167), Expect = 4e-83
Identities = 323/395 (82%), Gaps = 23/395 (6%)
Strand=Plus/Plus
Query 620 TATGTAGTGATATGCAGGATTGTTACATTGACATATGTTCTCTTGAGATGCTTAGTCACT 679
|||| ||||||||||||||||||||||||||||| ||||||| |||| ||||||||| ||
Sbjct 656 TATGCAGTGATATGCAGGATTGTTACATTGACATTTGTTCTCCTGAGGTGCTTAGTCTCT 715
Query 680 TTGTGGATAACTGCGATTACCAACATCTGCGTTGTGATTTTGTGGAA-GGTGTT-CTTGC 737
||| |||||||| ||||| || ||| |||| || ||||||| || ||| || ||||
Sbjct 716 TTGAGGATAACTTTGATTATCAGCATATGCGCCGTCATTTTGTT-AATGGT-TTGCTTGT 773
Query 738 TGATGATATTACGGGTTTCAAGATTTTCACTCATGAGAT-CAGCTCG--T-GTTATGCTG 793
||||||||||| ||||| ||||||||||||||||||||| ||| ||| | |||||||||
Sbjct 774 TGATGATATTATGGGTTACAAGATTTTCACTCATGAGATTCAG-TCGAGTTGTTATGCTG 832
Query 794 CTAGGATTGAAAACTTCCGGAGCTATGACA-TGGTTAGCAAGGATATAATCCAGAGGCGG 852
| ||||| || || || ||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 833 CAAGGATCGACAATTTACGGAGCTATGACACTG-TTAGCAAGGATATAATCCAGAGGTGG 891
Query 853 ACATTCCCGTATGTACCGGATAT-GAAGTTGAGCGGAAATCGGTCTCTTAAGCTCGGGAG 911
|||| |||||| ||||| |||| || || ||||| ||||| || | |||||||||||
Sbjct 892 ACATACCCGTACGTACCTAATATCGAT-TTCAGCGGGAATCGCCCTGTAAAGCTCGGGAG 950
Query 912 ACAAGGGAGCTATAA-GG-CTTCTGATGCTA-TCCGGTCAC-CATCTGTTCATGTTGGAG 967
|| |||| |||| || |||||||||| | | | |||| || ||| |||||||||
Sbjct 951 ACGGGGGA--TATACCGGGCTTCTGATGC-AGTTCAATCACACA-CTGCAGATGTTGGAG 1006
Query 968 ATTCCTCTGTCATTGGACATGCCAA-AAAGATTGG 1001
|||| ||||||||||| ||| || ||| |||||
Sbjct 1007 CTTCCACTGTCATTGGATATGGCACCAAA-ATTGG 1040
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62800881795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5