BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477464
Length=1641
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02300.1 | Symbols: | Regulator of chromosome condensation ... 2752 0.0
> AT3G02300.1 | Symbols: | Regulator of chromosome condensation
(RCC1) family protein | chr3:461148-464174 FORWARD LENGTH=1832
Length=1832
Score = 2752 bits (1490), Expect = 0.0
Identities = 1592/1642 (97%), Gaps = 3/1642 (0%)
Strand=Plus/Plus
Query 1 GGTCCCCGAGCTCTCGGAGCAAATGAACGAACGGGACACATTGCTTCTCTCTTTCCCTCC 60
|||||| |||||||||||||||||||| ||||| ||| ||||||||||||||||||||||
Sbjct 14 GGTCCCGGAGCTCTCGGAGCAAATGAATGAACGAGACTCATTGCTTCTCTCTTTCCCTCC 73
Query 61 GTTTCTTACACATTAACTCCACCAAAAACCGAACAAAAAGCTTCAGAATTTTCGATTCAT 120
|||||||||||||||||| | |||||||||||||||| | ||||||||||| ||||||||
Sbjct 74 GTTTCTTACACATTAACTACTCCAAAAACCGAACAAAGACCTTCAGAATTTGCGATTCAT 133
Query 121 CCAAATTTTAACAGTGATTTTTGAGGGGAATTTCTAAAAATGGATATCGGAGAAATCATT 180
|| ||||| |||| |||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 134 CC-AATTTCAACATTGATTTGTGAGGGGAATTTCTAAAAATGGATATTGGAGAAATCATT 192
Query 181 GGTGAAGTAGCTCCTCCTGTGAGTATCCCAACGAAGAGTGCTATATACGTTTGGGGTTAC 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 GGTGAAGTAGCTCCTTCTGTGAGTATCCCAACGAAGAGTGCTATATACGTTTGGGGTTAC 252
Query 241 AATCAAAGTGGACAAACTGGTAGGAATGGACAAGAGAAGCTTTTGCGTATCCCAAAACAG 300
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 253 AATCAAAGCGGACAAACTGGTAGGAATGAACAAGAGAAGCTTTTGCGTATCCCAAAACAG 312
Query 301 CTTCCTCCTGAGCTTTTTGGTTGCCCTGCTGGTGCGAAGTCGCGTTGGCTCGATATATCT 360
|||||||||||||||||||||||||| |||||||| || ||||||||||||||||| |||
Sbjct 313 CTTCCTCCTGAGCTTTTTGGTTGCCCCGCTGGTGCCAATTCGCGTTGGCTCGATATTTCT 372
Query 361 TGTGGTCGGGAACATACAGCTGCGGTTGCATCAGATGGATCTCTCTTTACTTGGGGTGCT 420
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 373 TGTGGTCGGGAACATACAGCTGCGGTTGCATCAGATGGTTCTCTCTTTGCTTGGGGTGCT 432
Query 421 AATGAATACGGTCAGCTTGGGGATGGAACCGAGGTTGGGAGGAAACATCCAAAGAAGGTG 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 AATGAATATGGTCAGCTTGGGGATGGAACCGAGGTTGGGAGGAAACATCCAAAGAAGGTG 492
Query 481 AAGCAGCTGCAATCAGAATTTGTGAAATTTGTGTCTTGTGGAGCTTTTTGCACTGCAGCT 540
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 AAACAGCTGCAATCAGAATTTGTGAAATTTGTGTCTTGTGGAGCTTTTTGCACTGCAGCT 552
Query 541 ATAGCAGAACCCCGTGAAAATGATGGTACTCTTTCCACTAGTAGACTCTGGGTTTGGGGC 600
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 553 ATCGCAGAACCCCGTGAAAATGACGGTACTCTTTCCACTAGTAGACTCTGGGTTTGGGGC 612
Query 601 CAAAATCAGGGATCAAATCTACCACGCTTGTTTTCGGGGGCATTTCCTGCTACAACGGCG 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 CAAAATCAGGGATCAAATCTACCACGCTTGTTTTCGGGGGCATTTCCTGCTACAACGGCA 672
Query 661 ATCCGCCAAGTATCATGTGGGACAGCTCATGTTGTGGCCTTATCAGAGGAAGGCCTTCTT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 ATCCGCCAAGTATCATGTGGGACAGCTCATGTTGTGGCCTTATCAGAGGAAGGCCTTCTT 732
Query 721 CAAGCTTGGGGCTATAATGAACAAGGCCAACTTGGTAGAGGAGTCACTTGTGAAGGACTA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 CAAGCTTGGGGCTATAATGAACAAGGCCAACTTGGTAGAGGAGTCACTTGTGAAGGACTA 792
Query 781 CAAGCACCTCGTGTGATAACTGCTTATGCGAAGTTCCTTGATGAAGCACCCGAGCTTGTG 840
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 793 CAAGCACCTCGTGTGATAAATGCTTATGCGAAGTTCCTTGATGAAGCACCCGAGCTTGTG 852
Query 841 AAGATTATGCAAGTTTCATGTGGGGAATACCATACTGCTGCTGTATCTGATACAGGCGAG 900
|||||||||||| |||||||||| |||||||||||||||||| | |||||| ||||||||
Sbjct 853 AAGATTATGCAACTTTCATGTGGAGAATACCATACTGCTGCTCTTTCTGATGCAGGCGAG 912
Query 901 GTTTACACTTGGGGATTAGGAAGCATGGGTCAACTTGGGCATGTTTCTCTTCAATCCGGG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 GTTTACACTTGGGGATTAGGAAGCATGGGTCAACTTGGGCATGTTTCTCTTCAATCCGGG 972
Query 961 GATAAGGAGTTAATACCAAGGAGAGTCGTTGGTCTCGATGGTGTGTCCATGAAAGAAGTT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 GATAAGGAGTTAATACCAAGGAGAGTCGTTGGTCTCGATGGTGTGTCCATGAAAGAAGTT 1032
Query 1021 GCTTGTGGTGGTGTACACACTTGTGCTTTATCTTTGGAAGGAGCACTTTATGCTTGGGGT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 GCTTGTGGTGGTGTACACACTTGTGCTTTATCTTTGGAAGGAGCACTTTATGCTTGGGGT 1092
Query 1081 GGTGGCCAAGCAGGACAGCTAGGACTTGGTCCTCAATCTGGTTTCTTGTTTAGTGTCTCT 1140
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1093 GGTGGCCAAGCAGGACAGCTAGGACTTGGTCCTCAATCTGGTTTCTTTTTTAGTGTCTCT 1152
Query 1141 AATGGAAGCGAAATGCTTCTACGAAATGTCCCGGTTTTAGTCATCCCAACTGATGTCCGG 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1153 AATGGAAGCGAAATGCTTCTACGAAATGTCCCGGTTTTAGTCATCCCAACTGATGTCAGG 1212
Query 1201 CTTGTTGCTTGTGGACATTCTCACACTCTCGTTTATATGAGAGAGGGACGGATTTGTGGA 1260
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1213 CTTGTTGCGTGTGGACATTCTCACACTCTCGTTTATATGAGAGAGGGACGAATTTGTGGA 1272
Query 1261 TGGGGTTATAATAGCTATGGTCAAGCAGCAAATGAGAAATCGTCATATGCTTGGTACCCA 1320
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1273 TGGGGTTATAATAGTTATGGTCAAGCAGCAAATGAGAAATCGTCATATGCTTGGTACCCA 1332
Query 1321 TCGCCTGTAGACTGGTGTGTAGGACAAGTGAGGAAGCTAGCAGCAGGAGGTGGTCATTCA 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 TCGCCTGTAGACTGGTGTGTAGGACAAGTGAGGAAGCTAGCAGCAGGAGGTGGTCATTCA 1392
Query 1381 GCTGTTTTAACCGATGCATTCTCGTTGAAGGAGTTGTGTGAATTTCAATTAGCAGATAGT 1440
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1393 GCTGTTTTAACCGATGCATTTTCGTTGAAGGAGTTGTGTGAATTTCAATTAGCAGATAGT 1452
Query 1441 GTGAACCTCTCAAATGCTTCAAAGATTCAAGATGTTGCATTCAGAATGGGATCCGAAGCT 1500
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1453 GTGAACCTCTCAAATGCTTCAGAGATTCAAGATGTTGCATTCAGAATGGGATCCGAAGCT 1512
Query 1501 TTAGCCCGCCTCTGCGAAAGACTCAGGGAGCAGTTACTTGATGGAGATTTTACTAATGGG 1560
||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct 1513 TTAGCCCGCCTCTGCGAAAGACTGAGGGAGCAGTTACTTGATGGGGACTTTACTAATGGG 1572
Query 1561 GAAGAAGTATATTAAAAAGCACAATCCCCAAACTCTAGAA-CAATTAAGTATTGTTGGAA 1619
||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||
Sbjct 1573 GAAGAAGTATATTAAAAAGCACAATCCCCAAACTCC-GAAACAATTTAGTATTGTTGGAA 1631
Query 1620 GTTATTACAATTCATCCTATAT 1641
|||||||||||| ||||||||
Sbjct 1632 GTTATTACAATTGGTCCTATAT 1653
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81073880175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5