BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477464 Length=1641 Score E Sequences producing significant alignments: (Bits) Value AT3G02300.1 | Symbols: | Regulator of chromosome condensation ... 2752 0.0 > AT3G02300.1 | Symbols: | Regulator of chromosome condensation (RCC1) family protein | chr3:461148-464174 FORWARD LENGTH=1832 Length=1832 Score = 2752 bits (1490), Expect = 0.0 Identities = 1592/1642 (97%), Gaps = 3/1642 (0%) Strand=Plus/Plus Query 1 GGTCCCCGAGCTCTCGGAGCAAATGAACGAACGGGACACATTGCTTCTCTCTTTCCCTCC 60 |||||| |||||||||||||||||||| ||||| ||| |||||||||||||||||||||| Sbjct 14 GGTCCCGGAGCTCTCGGAGCAAATGAATGAACGAGACTCATTGCTTCTCTCTTTCCCTCC 73 Query 61 GTTTCTTACACATTAACTCCACCAAAAACCGAACAAAAAGCTTCAGAATTTTCGATTCAT 120 |||||||||||||||||| | |||||||||||||||| | ||||||||||| |||||||| Sbjct 74 GTTTCTTACACATTAACTACTCCAAAAACCGAACAAAGACCTTCAGAATTTGCGATTCAT 133 Query 121 CCAAATTTTAACAGTGATTTTTGAGGGGAATTTCTAAAAATGGATATCGGAGAAATCATT 180 || ||||| |||| |||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 134 CC-AATTTCAACATTGATTTGTGAGGGGAATTTCTAAAAATGGATATTGGAGAAATCATT 192 Query 181 GGTGAAGTAGCTCCTCCTGTGAGTATCCCAACGAAGAGTGCTATATACGTTTGGGGTTAC 240 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 193 GGTGAAGTAGCTCCTTCTGTGAGTATCCCAACGAAGAGTGCTATATACGTTTGGGGTTAC 252 Query 241 AATCAAAGTGGACAAACTGGTAGGAATGGACAAGAGAAGCTTTTGCGTATCCCAAAACAG 300 |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 253 AATCAAAGCGGACAAACTGGTAGGAATGAACAAGAGAAGCTTTTGCGTATCCCAAAACAG 312 Query 301 CTTCCTCCTGAGCTTTTTGGTTGCCCTGCTGGTGCGAAGTCGCGTTGGCTCGATATATCT 360 |||||||||||||||||||||||||| |||||||| || ||||||||||||||||| ||| Sbjct 313 CTTCCTCCTGAGCTTTTTGGTTGCCCCGCTGGTGCCAATTCGCGTTGGCTCGATATTTCT 372 Query 361 TGTGGTCGGGAACATACAGCTGCGGTTGCATCAGATGGATCTCTCTTTACTTGGGGTGCT 420 |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct 373 TGTGGTCGGGAACATACAGCTGCGGTTGCATCAGATGGTTCTCTCTTTGCTTGGGGTGCT 432 Query 421 AATGAATACGGTCAGCTTGGGGATGGAACCGAGGTTGGGAGGAAACATCCAAAGAAGGTG 480 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 433 AATGAATATGGTCAGCTTGGGGATGGAACCGAGGTTGGGAGGAAACATCCAAAGAAGGTG 492 Query 481 AAGCAGCTGCAATCAGAATTTGTGAAATTTGTGTCTTGTGGAGCTTTTTGCACTGCAGCT 540 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 493 AAACAGCTGCAATCAGAATTTGTGAAATTTGTGTCTTGTGGAGCTTTTTGCACTGCAGCT 552 Query 541 ATAGCAGAACCCCGTGAAAATGATGGTACTCTTTCCACTAGTAGACTCTGGGTTTGGGGC 600 || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 553 ATCGCAGAACCCCGTGAAAATGACGGTACTCTTTCCACTAGTAGACTCTGGGTTTGGGGC 612 Query 601 CAAAATCAGGGATCAAATCTACCACGCTTGTTTTCGGGGGCATTTCCTGCTACAACGGCG 660 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 613 CAAAATCAGGGATCAAATCTACCACGCTTGTTTTCGGGGGCATTTCCTGCTACAACGGCA 672 Query 661 ATCCGCCAAGTATCATGTGGGACAGCTCATGTTGTGGCCTTATCAGAGGAAGGCCTTCTT 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 673 ATCCGCCAAGTATCATGTGGGACAGCTCATGTTGTGGCCTTATCAGAGGAAGGCCTTCTT 732 Query 721 CAAGCTTGGGGCTATAATGAACAAGGCCAACTTGGTAGAGGAGTCACTTGTGAAGGACTA 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 733 CAAGCTTGGGGCTATAATGAACAAGGCCAACTTGGTAGAGGAGTCACTTGTGAAGGACTA 792 Query 781 CAAGCACCTCGTGTGATAACTGCTTATGCGAAGTTCCTTGATGAAGCACCCGAGCTTGTG 840 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 793 CAAGCACCTCGTGTGATAAATGCTTATGCGAAGTTCCTTGATGAAGCACCCGAGCTTGTG 852 Query 841 AAGATTATGCAAGTTTCATGTGGGGAATACCATACTGCTGCTGTATCTGATACAGGCGAG 900 |||||||||||| |||||||||| |||||||||||||||||| | |||||| |||||||| Sbjct 853 AAGATTATGCAACTTTCATGTGGAGAATACCATACTGCTGCTCTTTCTGATGCAGGCGAG 912 Query 901 GTTTACACTTGGGGATTAGGAAGCATGGGTCAACTTGGGCATGTTTCTCTTCAATCCGGG 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 913 GTTTACACTTGGGGATTAGGAAGCATGGGTCAACTTGGGCATGTTTCTCTTCAATCCGGG 972 Query 961 GATAAGGAGTTAATACCAAGGAGAGTCGTTGGTCTCGATGGTGTGTCCATGAAAGAAGTT 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 973 GATAAGGAGTTAATACCAAGGAGAGTCGTTGGTCTCGATGGTGTGTCCATGAAAGAAGTT 1032 Query 1021 GCTTGTGGTGGTGTACACACTTGTGCTTTATCTTTGGAAGGAGCACTTTATGCTTGGGGT 1080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1033 GCTTGTGGTGGTGTACACACTTGTGCTTTATCTTTGGAAGGAGCACTTTATGCTTGGGGT 1092 Query 1081 GGTGGCCAAGCAGGACAGCTAGGACTTGGTCCTCAATCTGGTTTCTTGTTTAGTGTCTCT 1140 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1093 GGTGGCCAAGCAGGACAGCTAGGACTTGGTCCTCAATCTGGTTTCTTTTTTAGTGTCTCT 1152 Query 1141 AATGGAAGCGAAATGCTTCTACGAAATGTCCCGGTTTTAGTCATCCCAACTGATGTCCGG 1200 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1153 AATGGAAGCGAAATGCTTCTACGAAATGTCCCGGTTTTAGTCATCCCAACTGATGTCAGG 1212 Query 1201 CTTGTTGCTTGTGGACATTCTCACACTCTCGTTTATATGAGAGAGGGACGGATTTGTGGA 1260 |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1213 CTTGTTGCGTGTGGACATTCTCACACTCTCGTTTATATGAGAGAGGGACGAATTTGTGGA 1272 Query 1261 TGGGGTTATAATAGCTATGGTCAAGCAGCAAATGAGAAATCGTCATATGCTTGGTACCCA 1320 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1273 TGGGGTTATAATAGTTATGGTCAAGCAGCAAATGAGAAATCGTCATATGCTTGGTACCCA 1332 Query 1321 TCGCCTGTAGACTGGTGTGTAGGACAAGTGAGGAAGCTAGCAGCAGGAGGTGGTCATTCA 1380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1333 TCGCCTGTAGACTGGTGTGTAGGACAAGTGAGGAAGCTAGCAGCAGGAGGTGGTCATTCA 1392 Query 1381 GCTGTTTTAACCGATGCATTCTCGTTGAAGGAGTTGTGTGAATTTCAATTAGCAGATAGT 1440 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1393 GCTGTTTTAACCGATGCATTTTCGTTGAAGGAGTTGTGTGAATTTCAATTAGCAGATAGT 1452 Query 1441 GTGAACCTCTCAAATGCTTCAAAGATTCAAGATGTTGCATTCAGAATGGGATCCGAAGCT 1500 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1453 GTGAACCTCTCAAATGCTTCAGAGATTCAAGATGTTGCATTCAGAATGGGATCCGAAGCT 1512 Query 1501 TTAGCCCGCCTCTGCGAAAGACTCAGGGAGCAGTTACTTGATGGAGATTTTACTAATGGG 1560 ||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||| Sbjct 1513 TTAGCCCGCCTCTGCGAAAGACTGAGGGAGCAGTTACTTGATGGGGACTTTACTAATGGG 1572 Query 1561 GAAGAAGTATATTAAAAAGCACAATCCCCAAACTCTAGAA-CAATTAAGTATTGTTGGAA 1619 ||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||| Sbjct 1573 GAAGAAGTATATTAAAAAGCACAATCCCCAAACTCC-GAAACAATTTAGTATTGTTGGAA 1631 Query 1620 GTTATTACAATTCATCCTATAT 1641 |||||||||||| |||||||| Sbjct 1632 GTTATTACAATTGGTCCTATAT 1653 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81073880175 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5