BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477467
Length=1349
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02340.1 | Symbols: | RING/U-box superfamily protein | chr3... 1893 0.0
> AT3G02340.1 | Symbols: | RING/U-box superfamily protein | chr3:477003-478442
FORWARD LENGTH=1440
Length=1440
Score = 1893 bits (1025), Expect = 0.0
Identities = 1265/1372 (92%), Gaps = 52/1372 (4%)
Strand=Plus/Plus
Query 8 CGAAGCCCGGTTCCGCAATCAACCTTGAAGAAGAGGCGGAAGGCGACGGTGTAGCCGTAG 67
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 40 CGAAGCCCGATTCCGCAATCAACCTTGAAGAAGAGGCTGAAGGCGACGGTGTAGCCGTAG 99
Query 68 ACGATTCGATTTTCATACCGGAGGCCACGAACTTGCTCGTCCGTTACTCTTCGTTCGACG 127
||||| ||||||||||||||||| |||||||||| |||||||||||||| | |||||||
Sbjct 100 ACGATCCGATTTTCATACCGGAGACCACGAACTTACTCGTCCGTTACTCGCCATTCGACG 159
Query 128 ACAGGGACATCGATTGCAATCCTTATTTCCCTTTCTCA-G---GA--GCA-A-T-T---T 175
||||||||||||||||||||||||||||||||||| || | || || | | | |
Sbjct 160 ACAGGGACATCGATTGCAATCCTTATTTCCCTTTCACAGGCCCGATTTCAGATTCTGGAT 219
Query 176 CAGGTTCTTACTCGGATTCAGAGCCAGATCCCTACAGCTGTCCCATTGATTTCTTCGATC 235
||||||||||||||||||| ||||| |||||| ||||||||||||| |||||||||||||
Sbjct 220 CAGGTTCTTACTCGGATTCTGAGCCCGATCCCAACAGCTGTCCCATCGATTTCTTCGATC 279
Query 236 GAGATTCTTCCGATGTTGACGCGGCTGAGTACTTGGAATC-GGAAGGGCTGACCGCCGGT 294
||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||
Sbjct 280 GAGATTCTTCCGATGTTGACGTGGCTGAGTACTTGGAATCAGG-AGGGCTGACCGCCGGT 338
Query 295 GATTTTAATATTTGGGGCTTTTATGACCCCAAGGAAGACGAGGAAGAGGAGGAGGAGATA 354
|||| |||||||||||||||||||||||||||||||||||||| | | ||||||||||||
Sbjct 339 GATTATAATATTTGGGGCTTTTATGACCCCAAGGAAGACGAGG-A-A-GAGGAGGAGATA 395
Query 355 GTTTTGGGGACTAGATGTGTATCTGGATCCGGGTCGGATCAGCAACCGGGTGATTCAGAG 414
||||| | | | | | || ||||||||||||| ||||||||||||||||| |
Sbjct 396 GTTTT---G----G--G-G-A-CT---TCCGGGTCGGATCTGCAACCGGGTGATTCAGGG 440
Query 415 GAGCAAGGGCTTCGAGTGACCGGTATCGATTCCGATTCCGATTATGAAGAAGGCGTGTTT 474
|||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||
Sbjct 441 GAGCAAGGGCTTCGAGTGACCGGTATCGATTCAGATTCCGATTGTGAAGATGGCGTGTTT 500
Query 475 GATTTTACCTCGGAGGATAGTAGTGGGAATAGTGCAAATGATTCGGGTCGGGTCGAGGTT 534
||||||| ||| ||||||||||| |||||||| | |||||||||||||||||||||||||
Sbjct 501 GATTTTATCTCTGAGGATAGTAGCGGGAATAGGGGAAATGATTCGGGTCGGGTCGAGGTT 560
Query 535 GGTACGGGTCTTCCCCCTGTCTGGGATAACCTCTTCGGAGAGGGAACCGTGTTGGCTGAT 594
|||||||||||||| ||||| |||||| | ||||||||||||||||||||||||||||||
Sbjct 561 GGTACGGGTCTTCCTCCTGTGTGGGATCATCTCTTCGGAGAGGGAACCGTGTTGGCTGAT 620
Query 595 GAAGAATGGGAGGAGGTGCAGAACGCGATTAACTGGACAGCTTTTAGTGGTCCCg-a-a- 651
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
Sbjct 621 GAAGAATGGGAGGAGGTGCAGAACGCGATTAACTGGACAGCTTTTAGTGGACCCGAAGAT 680
Query 652 ga--a-gaagaagaagaaTTGTCTTCACTATCAAGGGATGAT---GAAGAAGATCATGAA 705
|| | |||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 681 GAGGACGAAGAAGATGAATTGTCTTCACTATCAAGGGATGATGAAGAAGAAGATCATGAA 740
Query 706 CTGGACTGGCAGGTTTTGTTAACTGTTAACAATGTTGTTAATTATATCGAACAAGCTGAA 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CTGGACTGGCAGGTTTTGTTAACTGTTAACAATGTTGTTAATTATATCGAACAAGCTGAA 800
Query 766 GGAATCATGCTAAACCCTGATGATATCGATCCGAATTATTACCTGTATCTATCTAGTTTG 825
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 801 GGAATCATGCTAAACCCTGATGATATCGATCCGGATTATTACCTGTATCTATCTGGTTTG 860
Query 826 GATGAATTTGATGAAAATCATAGTGGACATTATGATGCTGATGCTATTCTTGGGCAAATG 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 861 GATGAATTTGATGAAAATCATAGTGGACATTATGATGCTGATGCTATTCTTGGGCAAATG 920
Query 886 TTTGACAACGAGACTGGAATCAGGGGAAATCCTCCGGCAGCCAAAAGTGTAATTCAGGAT 945
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 921 TTTGATGACGAGACTGGAATCAGGGGAAATCCTCCAGCAGCCAAAAGTGTAATTCAGGAT 980
Query 946 CTTCCAGTTGTGGAGCTTACAGCGGAAGTGTTAAACAAAGGGAACA-TCGTTTGTGCGGT 1004
||||| |||||||||||| | | ||||| |||| |||||||||||| | |||||||||||
Sbjct 981 CTTCCGGTTGTGGAGCTTGCTGTGGAAGAGTTAGACAAAGGGAACAAT-GTTTGTGCGGT 1039
Query 1005 ATGCAAAGATGAAATGGTAGTGGAAGAGAAAGTAAGGAGGCTTCCTTGTAGTCATTTCTA 1064
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1040 ATGCAAAGATGAAATGTTAGTGGAGGAGAAAGTAAGGAGGCTTCCTTGTAGTCATTTCTA 1099
Query 1065 TCATGGAGAGTGTATTATGCCTTGGTTGGGGATAAGGAATACTTGTCCGGTTTGTCGGTA 1124
||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1100 TCATGGAGAGTGTATCATACCTTGGTTGGGGATAAGGAATACTTGCCCGGTTTGTCGGTA 1159
Query 1125 TGAGCTGCGTACTGATGATCTTGAGTATGAAAGGCATAAGAGCTCAGAAAGGAGCGATAC 1184
|||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1160 TGAGCTGCCTACTGATGATCTTGAGTATGAAAGACATAAGAGCTCAGAAAGGGGCGATAC 1219
Query 1185 TGGTTTGGTAAGGAAC-T-T-GCCGGGTAGATATAGTTAATTGAAT-TT-GAAGT-ATCT 1238
|||||||| ||||||| | | ||||||||||||||||||||||||| || ||||| ||||
Sbjct 1220 TGGTTTGGCAAGGAACGTGTTGCCGGGTAGATATAGTTAATTGAATATTTGAAGTGATCT 1279
Query 1239 GTTCTTCAAGTTAATAGACATGGTTTCAGAGGCAAGATCCTTGAACCACTTTGTTTTATG 1298
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1280 ATTCTTCAAGTTAATAGACATGGTTTCAGAGGCAAGATCCTTGAACCACTTTGTTT-ATG 1338
Query 1299 GTAAGTACTTATCGTGAATGTGATAATGCT-AATGTTGTATATATTCCTTTT 1349
||||| |||||||||||||||||||||| | || ||||||||||||||||||
Sbjct 1339 GTAAGCACTTATCGTGAATGTGATAATGTTTAA-GTTGTATATATTCCTTTT 1389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66415321035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5