BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477468
Length=2142
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02350.1 | Symbols: GAUT9 | galacturonosyltransferase 9 | ch... 3387 0.0
> AT3G02350.1 | Symbols: GAUT9 | galacturonosyltransferase 9 |
chr3:479006-481474 FORWARD LENGTH=2224
Length=2224
Score = 3387 bits (1834), Expect = 0.0
Identities = 2051/2153 (95%), Gaps = 25/2153 (1%)
Strand=Plus/Plus
Query 1 GTGTATTCTTCACTAAATGTTTGAGATCTATCCGTCACACTCCAGAGGTT-AACTCAGTC 59
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 77 GTGTATTCTTCACTAAATGTTTGAGATCTATCCGTCACACTCCAGAGGTTAAACTCAGTC 136
Query 60 ATCTGTCTCTGGGAGGACAAGCAAGCAAGAACCTCACCGACGATTCGAAACCAAA-AAAT 118
|||||||| | || ||| | ||||||||||||||||||||||||| | |||||| ||||
Sbjct 137 ATCTGTCT-TTGG-GGAGGA-CAAGCAAGAACCTCACCGACGATTCCATACCAAACAAAT 193
Query 119 TCCCGATCTGGAAACAACTGACCTGTGAAGGTGAAGTGTATCGGTGGAAATGGCGGTGGC 178
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 194 TCCCGATCTGGAAACAACTGACCTGTGAAGGTGAAGTGTATCGCTGGAAATGGCGGTGGC 253
Query 179 CTTCCGTGGAGGCCGGGGCGGCGTCGGATCCGGCCAATCTACCGGACTTCGTAGTTTCTT 238
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 254 CTTCCGTGGAGGCCGGGGAGGCGTCGGATCCGGCCAATCTACCGGACTTCGTAGTTTCTT 313
Query 239 CTCCTACCGGATCTTTATCTCCGCTTTGTTCTCTTTTCTCTTCCTTGCCACCTTCTCCGT 298
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 314 CTCCTACCGGATCTTTATCTCCGCTTTGTTCTCTTTTCTCTTCCTCGCCACTTTCTCCGT 373
Query 299 TGTTCTTAACTCTTCTCGTCATCAACCTCATCAGGATCATACATTGCCGAGTATGGGAAA 358
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 374 CGTTCTTAACTCCTCTCGTCATCAGCCTCATCAGGATCATACATTGCCGAGTATGGGCAA 433
Query 359 CGCATATATGCAGAGGACGTTTTTGGCTTTGCAATCGGATCCATTGAAAACAAGGTTGGA 418
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 434 CGCATATATGCAGAGGACGTTTTTGGCTTTGCAATCGGATCCATTGAAAACTAGGTTGGA 493
Query 419 TCTGATACACAAGCAAGCCACTGATCATCTCACACTGGTGAATGCGTATGCTGCGTACGC 478
|||||||||||||||||||| ||||||| | ||||||||||||||||||||||| |||||
Sbjct 494 TCTGATACACAAGCAAGCCATTGATCATTTGACACTGGTGAATGCGTATGCTGCTTACGC 553
Query 479 TAGGAAGCTAAAGCTTGATGCTTCTAAGCAGCTTAAGCTGTTTGAAGATTTGGCTATCAA 538
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 554 TAGGAAGCTAAAGCTTGATGCTTCTAAGCAGCTTAAGCTCTTCGAAGATTTGGCTATCAA 613
Query 539 CTTCTCGGATTTGCAGTCGAAACCTGGCTTGAAATCTGCTGTGTCTGATAATGGTTATGC 598
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 614 CTTCTCGGATTTGCAGTCGAAACCTGGTTTGAAATCTGCTGTGTCTGATAATGGTAATGC 673
Query 599 TCTTGAGGAGGATTCGTTTAGGCAGCTTGAGAAAGAAGTGAAAGATAAGGTGAAGACAGC 658
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 674 TCTTGAGGAGGATTCGTTTAGGCAGCTTGAGAAAGAAGTGAAGGATAAGGTGAAGACAGC 733
Query 659 GAGGATGATGATCGTTGAGTCTAAAGAGAGTTATGATACACAGCTTAAGATCCAGAAGTT 718
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 734 GAGGATGATGATCGTTGAGTCTAAAGAGAGTTATGATACACAGCTTAAAATCCAGAAGTT 793
Query 719 GAAAGATACAATCTTTGCTGTCCAAGAACAGTTGACAAAAGCTAAGAAAAACGGCGCTGT 778
||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 794 GAAAGATACAATCTTTGCTGTCCAAGAACAGTTGACAAAGGCTAAGAAAAACGGTGCGGT 853
Query 779 TGCTAGCTTGATTTCAGCCAAGTCGGTTCCTAAAAGTCTTCATTGTTTGGCCATGAGGCT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 854 TGCTAGCTTGATTTCAGCCAAGTCGGTTCCTAAAAGTCTTCATTGTTTGGCCATGAGGCT 913
Query 839 TGTAGGAGAGAGGATCTCAAATCCTGACAAGTACAAGGATGCTCCTCCTGACCCAGCCGC 898
|||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 914 TGTAGGAGAGAGGATCTCTAATCCTGAGAAGTACAAGGATGCTCCACCTGACCCAGCCGC 973
Query 899 GGAGGATCCAACTCTTTACCACTATGCGATTTTCTCTGATAACGTGATTGCTGTGTCTGT 958
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 974 AGAGGATCCAACTCTTTACCACTATGCGATTTTCTCTGATAATGTCATTGCTGTGTCTGT 1033
Query 959 TGTGGTGAGATCGGTTGTGATGAACGCCGAGGAGCCATGGAAGCATGTCTTCCATGTGGT 1018
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1034 TGTGGTGAGATCGGTTGTGATGAACGCTGAGGAGCCATGGAAGCATGTCTTCCATGTGGT 1093
Query 1019 GACCGATCGGATGAATCTTGCAGCCATGAAGGTCTGGTTTAAGATGCGTCCTTTGGACCG 1078
||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1094 GACAGATCGGATGAATCTCGCAGCCATGAAGGTGTGGTTTAAGATGCGTCCTTTGGACCG 1153
Query 1079 TGGTGCCCATGTTGAGATCAAATCCGTGGAGGATTTCAAGTTCTTAAACTCTTCGTATGC 1138
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1154 TGGTGCCCATGTTGAGATTAAATCCGTGGAGGATTTCAAGTTCTTAAACTCTTCCTATGC 1213
Query 1139 ACCGGTTTTGAGGCAGCTCGAGTCTGCCAAGTTGCAAAAGTTTTACTTCGAGAACCAAGC 1198
||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 1214 GCCGGTCTTGAGGCAGCTTGAGTCTGCCAAGTTGCAGAAGTTTTACTTTGAGAATCAAGC 1273
Query 1199 TGAGAACGCAACTAAAGATTCCCATAACCTCAAGTTCAAGAACCCGAAATATCTCTCGAT 1258
||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 1274 TGAGAACGCAACTAAAGATTCACATAACCTCAAGTTCAAGAACCCCAAGTATCTCTCGAT 1333
Query 1259 GTTGAACCATCTCAGATTTTACTTACCAGAGATGTATCCAAAGCTTAATAAGATTTTGTT 1318
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1334 GTTGAACCATCTCAGATTTTACTTACCAGAGATGTATCCGAAGCTGAATAAGATTTTGTT 1393
Query 1319 CTTGGACGATGATGTTGTGGTGCAGAAAGACGTGACAGGTTTATGGAAAATCAACTTGGA 1378
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1394 CTTGGACGATGATGTTGTGGTGCAGAAAGACGTGACTGGTTTATGGAAAATCAACTTGGA 1453
Query 1379 TGGCAAGGTGAATGGAGCTGTTGAGACATGCTTTGGTTCTTTTCACCGATATGGTCAATA 1438
|||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1454 TGGCAAGGTGAATGGAGCCGTTGAGACATGTTTTGGTTCTTTTCATCGATATGGTCAATA 1513
Query 1439 CTTAAACTTCTCTCATCCTTTGATCAAAGAGAGCTTTAACCCCAATGCCTGTGCTTGGGC 1498
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1514 CTTAAACTTCTCTCATCCTTTGATCAAAGAGAACTTTAACCCCAGTGCCTGTGCTTGGGC 1573
Query 1499 CTTTGGAATGAATATATTCGATCTCAATGCCTGGAGGCGCGAGAAATGCACTGATCAATA 1558
|||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 1574 CTTTGGAATGAACATATTCGATCTCAATGCCTGGAGACGCGAGAAGTGCACCGATCAATA 1633
Query 1559 CCATTACTGGCAGAACTTGAATGAAGACAGAACTCTCTGGAAATTGGGAACTCTACCTCC 1618
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1634 CCATTACTGGCAGAACCTGAATGAAGACAGAACTCTCTGGAAATTGGGAACTCTACCTCC 1693
Query 1619 GGGGTTGATCACATTCTATTCAAAGACGAAATCATTGGACAAATCATGGCATGTGCTTGG 1678
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1694 GGGATTGATCACATTCTATTCAAAGACGAAATCATTGGACAAATCATGGCATGTACTTGG 1753
Query 1679 GTTAGGCTACAACCCGGGAGTGAGCATGGACGAAATCAGAAATGCAGGAGTGATTCATTA 1738
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1754 GTTAGGCTATAACCCGGGAGTGAGCATGGACGAAATCAGAAATGCAGGAGTGATTCATTA 1813
Query 1739 CAATGGAAACATGAAACCGTGGCTTGACATTGCGATGAACCAATACAAGTCTCTCTGGAC 1798
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1814 CAATGGAAACATGAAACCGTGGCTAGACATTGCGATGAACCAATACAAGTCTCTCTGGAC 1873
Query 1799 TAAATATGTTGATAACGAAATGGAGTTTGTGCAGATGTGCAATTTTGGTCTCTAAAGAGA 1858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1874 TAAATATGTTGATAACGAAATGGAGTTTGTGCAGATGTGCAATTTTGGTCTCTAAAGAGA 1933
Query 1859 GAGCGGCGGAAA-AAACCAAACCGGAAAGAGGAAAAA-T-GCAGAGAAGAGGTAACCTCG 1915
|| || | ||| |||| ||||||||||||||||||| | | |||||||||||||||||
Sbjct 1934 GAACGATGAAAACAAAC-AAACCGGAAAGAGGAAAAAATAGG-GAGAAGAGGTAACCTCG 1991
Query 1916 GATCGATGTGTTGA-GTCTTTCTGGGCATTCTTTAACTGATGATACGTTTTATCTTTATA 1974
|||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1992 GATCGATGTGTTTCTGTCTTTCTCGGCATTCTTTAACTGATGATACGTTT-ATCTTTATA 2050
Query 1975 TAGGGTTACAAAAAA---G--GTATTTTGCTTGTTATTTCTTCTGTCATAGTTTCGGTCT 2029
||||||||||||||| | | |||||||||||||||||| |||||||||| |||||
Sbjct 2051 TAGGGTTACAAAAAAAAAGAAGCATTTTGCTTGTTATTTCT---GTCATAGTTTTGGTCT 2107
Query 2030 TTATTTTTAATTTGTAAACTCTTCACAGCAATATGTTCTCCCAAGCTACAATGTCTCTCT 2089
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2108 TTATTTTTATTTTGTAAACTCTTCACAGCAATATGTTCTCCCAAGCTACAATGTCT-T-- 2164
Query 2090 TTGTTGTCTTTCTTTCATACTTGTCTGCCTTAAGAATCATATAGAAGAAACTC 2142
||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2165 --GTTGTCTTTATTTCATACTTGTCTGCCTTAAGAATCATATAGAAGAAACTC 2215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106224353220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5