BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477469
Length=1730
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02360.2 | Symbols: | 6-phosphogluconate dehydrogenase fami... 2641 0.0
> AT3G02360.2 | Symbols: | 6-phosphogluconate dehydrogenase family
protein | chr3:482028-484147 FORWARD LENGTH=1929
Length=1929
Score = 2641 bits (1430), Expect = 0.0
Identities = 1546/1601 (97%), Gaps = 11/1601 (1%)
Strand=Plus/Plus
Query 135 AGAGAAGAAGACGAAGAAAAATGGCTGTTCAACCTACGAGAATTGGTCTAGCTGGACTGG 194
|||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| |
Sbjct 260 AGAGAAGAAGACTTAGAAAAATGGCTGTTCAACCTACAAGAATAGGTCTAGCTGGACTTG 319
Query 195 CTGTGATGGGTCAGAACCTAGCTCTCAACATTGCTGAGAAAGGCTTCCCAATCTCTGTTT 254
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 320 CTGTGATGGGTCAGAACCTAGCTCTCAACATTGCAGAGAAAGGCTTCCCAATCTCTGTTT 379
Query 255 ACAACAGAACAACTTCCAAAGTTGATGAGACCGTCGAACGAGCCAAAAAGGAAGGCAATC 314
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 ACAACAGAACTACTTCCAAAGTTGATGAGACCGTCGAACGAGCCAAAAAGGAAGGCAATC 439
Query 315 TTCCTCTTTATGGCTTCCATGACCCCGAGTCTTTTGTCAAGTCCATTCAGAAGCCACGCG 374
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 TTCCTCTTTACGGCTTCCATGACCCCGAGTCTTTTGTCAAGTCCATTCAGAAGCCACGCG 499
Query 375 TTATTATCATGCTTGTTAAGGCTGGTGCTCCTGTTGACCAGACCATCAAGACCCTCTCTG 434
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 500 TTATTATCATGCTTGTTAAGGCTGGTTCTCCCGTTGACCAGACCATCAAGACCCTCTCTG 559
Query 435 CTTATTTGGAGAAGGGTGATTGCATTGTTGATGGTGGTAATGAATGGTATGAGAACACTG 494
||||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 560 CTTATTTGGAGAAAGGTGACTGTATTGTCGATGGTGGTAATGAATGGTATGAGAACACTG 619
Query 495 AGAGGAGAGAAAAAGCCGTGGCTGAGAACGGTTTCCTCTACCTTGGAATGGGAGTTTCTG 554
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 620 AGAGGAGAGAAAAAGCCGTGGCGGAGAACGGTTTCCTCTACCTTGGAATGGGAGTTTCTG 679
Query 555 GTGGTGAAGAAGGTGCTCGTAATGGCCCATCTATGATGCCTGGAGGCTCTTATGAAGCCT 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 GTGGTGAAGAAGGTGCTCGTAATGGCCCATCTATGATGCCTGGAGGCTCTTATGAAGCCT 739
Query 615 ACAAGAATATTGAGGACATTGTTCTCAAGGTTGCTGCTCAGGTTAGGGATAGTGGTCCCT 674
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 ACAAGAATATCGAAGACATTGTTCTCAAGGTTGCTGCTCAGGTTAGGGATAGTGGTCCCT 799
Query 675 GCGTTACTTACATCGGTAAGGGCGGGTCTGGAAACTTTGTCAAAATGGTCCACAATGGGA 734
| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 GTGTGACTTATATCGGTAAGGGCGGGTCTGGAAACTTTGTCAAAATGGTCCACAATGGGA 859
Query 735 TCGAGTACGGTGATATGCAGCTGATCGCAGAAGCTTACGACGTCCTCAAGTCTGTTGGTA 794
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 860 TCGAGTACGGTGATATGCAGCTGATTGCAGAAGCTTATGACGTCCTCAAGTCTGTTGGTA 919
Query 795 AATTAACGAATGAGGAGCTTCACAGTGTCTTCTCTGACTGGAACAAAGGTGAGCTTGAGA 854
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 920 AATTATCGAATGAGGAGCTTCACAGTGTCTTCTCTGACTGGAACAAAGGTGAGCTTGAGA 979
Query 855 GTTTCTTGGTAGAGATCACAGCGGATATTTTTGGGATCAAGGACGATAAGGGAGATGGGC 914
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 980 GTTTCTTGGTAGAGATCACAGCAGATATTTTCGGGATCAAGGACGATAAGGGAGATGGGC 1039
Query 915 ATTTGGTTGACAAGGTTTTGGACAAAACCGGCATGAAAGGTACAGGAAAGTGGACCGTGC 974
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1040 ATTTGGTTGACAAGGTCTTGGACAAAACCGGCATGAAAGGCACAGGAAAGTGGACCGTGC 1099
Query 975 AGCAAGCTGCTGAGCTATCTGTTCCTGCTCCCACCATTGAATCCTCTCTTGATGCGAGGT 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 AGCAAGCTGCTGAGCTATCTGTTCCTGCTCCCACCATTGAATCCTCTCTTGATGCGAGGT 1159
Query 1035 TCCTCAGCGGGCTAAAAGATGAACGTGTGCAAGCAGCTAAAGTCTTCAAGGCAGGTGGGT 1094
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 TCCTTAGCGGGCTTAAAGATGAACGTGTGCAAGCAGCTAAAGTCTTCAAGGCAGGTGGGT 1219
Query 1095 TTGGAGATATCTTGACCGATCAGAATGTTGACAAGAAGCAGCTAGTCGATGACGTGAGGA 1154
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1220 TTGGAGATATCTTGACCGATCAGAAAGTTGACAAGAAACAGCTAGTCGATGACGTGAGGA 1279
Query 1155 AGGCTCTTTACGCATCCAAAATCTGCAGCTACGCACAAGGCATGAACCTTATCCGTGCCA 1214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1280 AGGCTCTTTACGCATCCAAAATCTGCAGCTACGCACAAGGCATGAACCTTATCCGTGCCA 1339
Query 1215 AGAGCATAGAGAAA-GGGTGGGGCTTGAAGCTAGGTGAGTTAGCTAGAATCTGGAAAGGA 1273
|||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1340 AGAGCATAGA-AAAGGGGTGGGGATTGAAGCTAGGTGAGTTAGCTAGAATCTGGAAAGGA 1398
Query 1274 GGCTGCATCATCAGAGCAATCTTCCTAGACAGGATCAAGCAAGCTTATGACAGGAATGCA 1333
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1399 GGCTGCATCATCAGAGCAATCTTCCTAGACAGGATCAAGCAAGCTTATGACAGGAACGCA 1458
Query 1334 GAGCTGGCTAACCTCTTGGTGGATCCTGAGTTTGCGAAAGAGATAATCGAGAGACAGTCC 1393
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1459 GAGCTAGCTAACCTCTTGGTGGATCCAGAGTTTGCGAAAGAGATAATCGAGAGACAGTCC 1518
Query 1394 GCTTGGAGAAGAGTCGTCTGCTTAGCTATCAACTCGGGAATTAGCACACCGGGTATGTCT 1453
|| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1519 GCGTGGAGAAGAGTCGTCTGCTTAGCTATCAACTCGGGTATCAGCACACCGGGTATGTCT 1578
Query 1454 GCGAGTCTAGCCTACTTTGATTCTTACAGGAGAGAGAGATTGCCGGCAAATCTAGTCCAA 1513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1579 GCGAGTCTAGCCTACTTTGATTCTTACAGGAGAGAGAGATTGCCGGCAAATCTAGTCCAA 1638
Query 1514 GCACAGAGAGACTACTTTGGTGCTCATACATATGAAAGGACTGATGTGGAAGGATCTTTC 1573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1639 GCACAGAGAGACTACTTTGGTGCTCATACATATGAAAGGACTGATGTGGAAGGATCTTTC 1698
Query 1574 CACACCGAGTGGTTCAAGATTGCAAGACAATCCAAGATCTGAGATCTCTCCTCCTCTTTG 1633
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
Sbjct 1699 CACACCGAGTGGTTCAAGATTGCAAGACAATCTAAGATCTGAGATCTCTCATCCTCTT-G 1757
Query 1634 TATTCTTCTTCT--T-CAATAATAATTTTCACACAGAATGTTTGCTT-CCTCAATGTGTG 1689
|||||||||||| | ||||||||| || ||||||| |||||| ||| ||||||||||||
Sbjct 1758 TATTCTTCTTCTCCTTCAATAATAAGTTCCACACAGTATGTTT-CTTTCCTCAATGTGTG 1816
Query 1690 AAGAAATACATTGGCTTATTTATGATTGTAGAACTGAGTTT 1730
| || ||| |||||||||||||||||||||||||||||||
Sbjct 1817 A-GA--TACCTTGGCTTATTTATGATTGTAGAACTGAGTTT 1854
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85541728680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5