BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477472
Length=1174
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02380.1 | Symbols: COL2, ATCOL2 | CONSTANS-like 2 | chr3:48... 1829 0.0
AT5G15850.1 | Symbols: COL1, ATCOL1 | CONSTANS-like 1 | chr5:51... 285 7e-76
> AT3G02380.1 | Symbols: COL2, ATCOL2 | CONSTANS-like 2 | chr3:487236-488693
REVERSE LENGTH=1315
Length=1315
Score = 1829 bits (990), Expect = 0.0
Identities = 1074/1116 (96%), Gaps = 0/1116 (0%)
Strand=Plus/Plus
Query 52 ATGTTGAAAGAAGAGAGTAACGAGAGTGGTTCTTGGGCACGAGCATGTGACACTTGTCGT 111
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 70 ATGTTGAAAGAAGAGAGTAATGAGAGTGGTACTTGGGCACGAGCATGTGACACTTGTCGT 129
Query 112 TCAGCCGCCTGCACTGTCTACTGTGAAGCTGACTCTGCCTACTTGTGCACCACCTGTGAT 171
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 130 TCAGCCGCCTGCACTGTCTACTGTGAAGCCGACTCTGCCTACTTGTGCACCACCTGTGAT 189
Query 172 GCTCGAGTTCACGCAGCCAATCGTGTTGCTTCTCGCCATGAACGTGTTCGTGTCTGTCAG 231
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 190 GCTCGAGTTCACGCAGCCAACCGTGTTGCTTCTCGCCATGAACGTGTTCGTGTCTGTCAG 249
Query 232 TCATGTGAATCTGCCCCGGCTGCGTTTTTGTGTAAAGCAGACGCTGCGTCTCTTTGCACA 291
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 250 TCATGTGAGTCTGCCCCAGCTGCGTTTTTGTGTAAAGCAGACGCTGCGTCTCTTTGTACA 309
Query 292 GCTTGTGATGCTGAGATTCATTCCGCAAACCCACTAGCTAGACGTCATCAACGAGTTCCG 351
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 310 GCTTGTGATGCAGAGATTCATTCCGCAAACCCACTAGCTAGACGTCATCAGCGAGTTCCG 369
Query 352 ATTCTGCCATTATCTGCAAACTCTTGCAGCTCCATGGCCCCAAGTGAGACTGATGCAGAT 411
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 370 ATTCTTCCATTATCTGCAAACTCTTGCAGCTCCATGGCCCCAAGTGAGACTGATGCTGAT 429
Query 412 AACGATGAGGATGATCGAGAGGTGGCTTCGTGGTTACTGCCTAATCCAGGGAAAAACAGC 471
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
Sbjct 430 AACGATGAGGATGATCGAGAGGTTGCTTCGTGGTTACTCCCTAATCCAGGGAAAAACATC 489
Query 472 GGTAATCAGAACAATGGGTTCTTGTTTGGTGTTGAGTACCTTGATCTCGTGGATTACAGC 531
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 490 GGTAATCAGAATAATGGGTTCTTGTTTGGTGTTGAGTACCTTGATCTTGTGGATTACAGC 549
Query 532 TCCAGCATGGACAACCAATTCGAAGATCATCAGTACAGTCACTACCAAAGGAGCTTTGGA 591
||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||
Sbjct 550 TCCAGCATGGACAACCAATTCGAAGATAATCAGTACACTCACTACCAGAGGAGCTTTGGA 609
Query 592 GGAGATGGAGTTGTGCCACTTCAAGTTGAAGAATCAACAAGTCACCTTCAACAAAGCCAA 651
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 610 GGAGATGGAGTTGTGCCGCTTCAAGTTGAAGAATCAACAAGTCACCTGCAACAAAGCCAA 669
Query 652 CACAACTTTCAGTTGGGTATCAACTATGGCTTCTCCTCAGGACCTCACTACAACAACAAC 711
|| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 670 CAAAACTTTCAGTTGGGTATCAACTATGGATTCTCCTCAGGAGCTCACTACAACAACAAC 729
Query 712 TCCTTAAAGGACCTAAACCATAGCGCATCCGTTTCATCAATGGACATCAGTGTTGTGCCA 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 TCCTTAAAGGACCTAAACCATAGCGCATCCGTTTCATCAATGGACATCAGTGTTGTGCCA 789
Query 772 GAGTCAACAGCAAGTGACATAACAGTCCAACACCCAAGAACAACTAAAGAGACGACAGAC 831
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 790 GAGTCAACTGCAAGTGACATAACAGTCCAACACCCAAGAACTACTAAAGAGACGATAGAC 849
Query 832 CAACTAGCTGGTCCTCCTACTCAGGTGGTGCAGCAGCTTACTCCAATGGAGAGGGAGGCT 891
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 850 CAACTATCTGGTCCTCCTACTCAGGTGGTGCAACAGCTTACTCCAATGGAGAGGGAGGCT 909
Query 892 AGGGTCCTGAGATACAGAGAGAAGAAGAAGACGAGGAAATTTGACAAGACAATAAGGTAT 951
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 910 AGGGTCCTGAGATACAGAGAGAAGAAGAAGACAAGGAAATTTGACAAGACAATAAGATAT 969
Query 952 GCTTCAAGAAAGGCATATGCAGAGATAAGACCACGGATCAAGGGCCGATTCGCAAAGAGG 1011
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 970 GCTTCAAGAAAGGCATATGCAGAGATAAGACCACGGATCAAGGGCAGATTCGCAAAGAGG 1029
Query 1012 ATAGAAATTGAAGCTGAGGCTGAAGAAATTTTCTCAACATCGCTAATGTCTGAGACCGGA 1071
||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1030 ATAGAAACTGAAGCTGAGGCTGAAGAAATCTTCTCAACATCGCTAATGTCTGAGACTGGA 1089
Query 1072 TATGGAATTGTTCCTTCCTTCTGAACTCGTGTGGCGAAGATGGACTAGATTGCATGCTGT 1131
||||||||||| |||||||||| ||||| | |||||||||| ||||||||||||||||||
Sbjct 1090 TATGGAATTGTCCCTTCCTTCTAAACTCCTATGGCGAAGATAGACTAGATTGCATGCTGT 1149
Query 1132 AAATTACTTCTAGTTTGTATTTCTACAAGTTTTTAC 1167
||||||||||||||||| ||||||||||||| ||||
Sbjct 1150 AAATTACTTCTAGTTTGGATTTCTACAAGTTATTAC 1185
> AT5G15850.1 | Symbols: COL1, ATCOL1 | CONSTANS-like 1 | chr5:5176091-5177897
REVERSE LENGTH=1698
Length=1698
Score = 285 bits (154), Expect = 7e-76
Identities = 597/797 (75%), Gaps = 85/797 (11%)
Strand=Plus/Plus
Query 415 GATGAGGATG-ATCGAGAGGTGGCTTCGTGGTTACTGCCTAATCCAGGGAAAAACAGCGG 473
||||| |||| | | ||||| |||||| ||||| |||||||| ||||||||||||| ||
Sbjct 821 GATGAAGATGAAGC-AGAGGCGGCTTCATGGTTGTTGCCTAATTCAGGGAAAAACAGTGG 879
Query 474 TAATCAGAACAATGGGTTCTTGTTTGGTGTTGAGTACCTTG-ATCTCGTGGATTACAGCT 532
||| | |||||||| |||| | |||| | ||||| | || | || || ||||| || |
Sbjct 880 TAA-C--AACAATGGCTTCTCGATTGGGGATGAGTTTC-TGAACCTTGTTGATTATAGTT 935
Query 533 CCAGCATGGACAACCAATT--C-GA--AGAT-C-ATCAG--T--AC-AG--T-C-AC-TA 575
| || | || || ||||| | || | || | ||||| | || || | | || ||
Sbjct 936 CGAG--T-GATAAGCAATTCACAGATCA-ATCCAATCAGTATCAACTAGACTGCAACGTA 991
Query 576 -C-CAAAGGAGCTTTGGAGG-AGATGGAGTTGTGCCACTTCAAGTTGAAGAATCAACAAG 632
| || ||||||| ||| || |||||||||||| ||||||||| |||||| ||||| | |
Sbjct 992 CCTCAGAGGAGCTATGG-GGAAGATGGAGTTGTTCCACTTCAAATTGAAGTATCAA-AGG 1049
Query 633 TCACCT-TCAACAA-AGCCAACACAACTTTCAGTTGGGTATCAACTATGGCTTCTCCTCA 690
|| | | | ||| || ||||| ||||||||| || ||||||||| ||| |||||
Sbjct 1050 GCA--TGT-ACCAAGAG-CAACAGAACTTTCAGCTGAGTATCAACTGTGG---CTCCTGG 1102
Query 691 GGACCTCACTACAACAACAACTCCTTAAAGG--ACCTAAACCATA--GCGCATCCGTTTC 746
||| || || | | | |||| || || ||| | |||| | | || |||||
Sbjct 1103 GGAGCT--CT---TCGA-AGCTCC--AATGGTTCCCTCAGTCATATGGTGAAT--GTTTC 1152
Query 747 ATCAATGGACATCAGTGTTGTGCCAGAGTCAACAGCAAGTGACATAACAGT-CCAACACC 805
||| |||||| | | |||||||| ||||||||| | |||||| |||||| ||| |||
Sbjct 1153 ATCTATGGACCTGGGAGTTGTGCCGGAGTCAACAACGAGTGACGCAACAGTATCAA-ACC 1211
Query 806 CAAGAACAACTAAAGAGACGACAGACCAACTAGCTGGTCCTCCTACTCAGGTGGTGCAGC 865
||||| | | |||| | |||||||||| | || | | ||| | || | | |||
Sbjct 1212 CAAGATCGCCCAAAGCGGTAACAGACCAACCACCT--TAC-CCT-C-CA---GCT-CAG- 1261
Query 866 A-GCTTACTCCAATGGAGAGGGAGGCTAGGGTCCTGAGATACAGAGAGAAGAAGAAGACG 924
| ||| | ||||| ||| || || ||||| |||||||||||||||||||||||||||| |
Sbjct 1262 ATGCTCAGTCCAAGGGACAGAGAAGCTAGAGTCCTGAGATACAGAGAGAAGAAGAAGATG 1321
Query 925 AGGAAATTTGACAAGACAATAAGGTATGCTTCAAG-AAAGGCATATGCAGAGATAAGACC 983
||||||||||| ||||| ||||| ||||||||||| |||| | |||||||||| ||||||
Sbjct 1322 AGGAAATTTGAGAAGACGATAAGATATGCTTCAAGGAAAG-CGTATGCAGAGAAAAGACC 1380
Query 984 ACGGATCAAGGGCCGATTCGCAAAGAGGATAGAAATTGAAGCTGAGGCTGAAGAAAT-TT 1042
||||||||||||||| || ||||||| || ||| | || | ||||| || || ||
Sbjct 1381 ACGGATCAAGGGCCGGTTTGCAAAGAAGAAAGATGTCGATGAAGAGGCA-AACCAAGCTT 1439
Query 1043 TCTCAACA-TCGCTAATGTCTGAGACCGGATATGGAATTGTTCCTTCCTTCTGAA-CT-C 1099
|||| ||| | | ||| | ||| |||||||||||||||||||| || |||||| || |
Sbjct 1440 TCTCCACAAT-GATAACATTTGACACCGGATATGGAATTGTTCCATCATTCTGATGCTGC 1498
Query 1100 GTGTGGCGAAGATGGACTAGATTGCATGCT-GTAAATTACTTCTAGTTTGTATTTC-TAC 1157
| |||| || | |||||| |||||||| ||||||||||||| ||||| | ||| | |
Sbjct 1499 -TATGGC-AA-A---ACTAGACTGCATGCTTGTAAATTACTTCTGGTTTGAAATTCCTGC 1552
Query 1158 AAGTTTTTACCACAGTT 1174
||||| ||||||| |||
Sbjct 1553 AAGTTATTACCACGGTT 1569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57630225660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5