BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477473
Length=1681
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02400.1 | Symbols: | SMAD/FHA domain-containing protein |... 1548 0.0
> AT3G02400.1 | Symbols: | SMAD/FHA domain-containing protein
| chr3:489830-491587 FORWARD LENGTH=1758
Length=1758
Score = 1548 bits (838), Expect = 0.0
Identities = 1027/1118 (92%), Gaps = 14/1118 (1%)
Strand=Plus/Plus
Query 568 AGGGTTGGGAGGCCTCGGAAGAACGCAGGCAGTGCAGTTACGAAGGAAGAAGAAGTTGTG 627
|||||||||||||| |||||||||||| | |||||| ||||| |||||||||||||||||
Sbjct 646 AGGGTTGGGAGGCCCCGGAAGAACGCAAGTAGTGCAATTACGGAGGAAGAAGAAGTTGTG 705
Query 628 GAGGAGAAAAAAGGCAACTCTAGGGCTCGGAGAGGTAAGAACACTGAGAGTGTGCAGAAA 687
||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct 706 GAGGAGAAAAAAGGCAACTCTAGGGCTCGGAGAGGTAAGAACAGTGAGATTGTCCAGAAA 765
Query 688 TCAATCAAATTGGAAGTTGAGGATACTCCCAAGGCAGTGGAAATCTCAGAGGTCAAAAGC 747
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 766 TCAATCAAATTGGAAGTTGAGGATACTCCCAAGGCAGTGGAAATCTCAGAGGTGAAAAGC 825
Query 748 AGGAAGAGAGTGGCAAGGAGCAAGCAGATTGAAAATGCCTGTTTGGGAATGGAGGTTAAA 807
|||||||||||| |||||||||||||||| ||||||| ||||| ||| |||||||||||
Sbjct 826 AGGAAGAGAGTGACAAGGAGCAAGCAGATAGAAAATGAATGTTTTGGATTGGAGGTTAAA 885
Query 808 AATGAGATGAGAACTACTAGGTCTACCAGAAGCAAGAAGACTGAACTTGGTGGAGATTCT 867
|||||| ||||||||| ||||||||||||||||||| ||||||| |||||||||| |||
Sbjct 886 GATGAGAAGAGAACTACAAGGTCTACCAGAAGCAAGACGACTGAAATTGGTGGAGAGTCT 945
Query 868 TTTCTGGAGTTGGAGATGGTCCTGAACCAAGCCCGGAAAAGCCGTGCAAAGAGGAAGAAA 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 TTTCTGGAGTTGGAGATGGTCCTGAACCAAGCCCGGAAAAGCCGTGCAAAGAGGAAGAAA 1005
Query 928 GTGGATCAGGAGCCGTCCAAGGAAACTATAAATGATGATGCCGGAGAAGAGGTTTTGGAG 987
||||| ||||||| |||||||| |||| |||||||||||||||||||||||||||| ||
Sbjct 1006 ATGGATGAGGAGCCATCCAAGGAGACTAGAAATGATGATGCCGGAGAAGAGGTTTTGAAG 1065
Query 988 AACTGTCATGTTGAAGAAGATACTGAAAATGAAACTCAGGAAGGTTGCAGTGAAAGAAGT 1047
|||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||
Sbjct 1066 AACTGTCATGTTGAAGAAGATAAGGAAAATGAAGCTCAGGAAGGTTGCAGTGGAAGAAGT 1125
Query 1048 GATGACAAATGTGATAAAGAAGATGAGAGGGAAGGTGATGGATCTAAGAGGGTCGAGCAG 1107
||||||| ||||||| |||||||||||| |||| | ||||||||||||||||| ||||||
Sbjct 1126 GATGACATATGTGATCAAGAAGATGAGAAGGAATGCGATGGATCTAAGAGGGTAGAGCAG 1185
Query 1108 GTGGAAATTGAGTTAAGGAAGAAGAGCACATTAGTAGAAGATGGCCTGAACTGTACTGCT 1167
||||| ||||||||||||||||| ||||| ||||| | | |||||||| || |||| |
Sbjct 1186 GTGGAGATTGAGTTAAGGAAGAAAAGCAC---AGTAG-A-A-GGCCTGAAATGCACTGAT 1239
Query 1168 AGAGAGGATGGAGAGACAGAGAACTTACAAGATATTG-AAGAAGAAA-ATGATAATGAAA 1225
| ||| |||||||| |||||||||| ||||||||||| ||| ||||| | || |||||||
Sbjct 1240 AAAGAAGATGGAGAAACAGAGAACTCACAAGATATTGAAAG-AGAAAGA-GAAAATGAAA 1297
Query 1226 AAGAAAATGGA-CACGAAGAAGGTTGCAGTGAAA-AATGTGATAAAGAAGATGAGAGAGT 1283
| ||||| | | | | |||||||||||||||||| || ||||||||||| ||||||| ||
Sbjct 1298 ATGAAAAAGAAGCTC-AAGAAGGTTGCAGTGAAAGAA-GTGATAAAGAATATGAGAGGGT 1355
Query 1284 TGGTGATGGGTCTAAGAGGGTAGAGCAGGTGGAGATCGAGTTGAGGAAGAAGAGCACCTT 1343
||||| |||| ||||||||||||||||||||||||| ||||| |||||||| |||||| |
Sbjct 1356 TGGTGGTGGGGCTAAGAGGGTAGAGCAGGTGGAGATTGAGTTAAGGAAGAAAAGCACCGT 1415
Query 1344 AGGAGAAGATGACCTGAACTGTACTGTTAGAGAAGATGGAGAGACAGACAACTTACAAGA 1403
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1416 AGGAGAAGATGACCTGAACTGTACTGTTAGAGAAGATGGAGAGACAGAAAACTTACAAGA 1475
Query 1404 AATTGAAGAAGAATGTCATGAAAAGGAAAGTGAGTGCAAGGTCGAGGAGGCTGGAATTGC 1463
|||||||||||| ||||| || |||||||||| ||||||||||||||||||||| ||||
Sbjct 1476 AATTGAAGAAGAGTGTCACGACGAGGAAAGTGACTGCAAGGTCGAGGAGGCTGGATTTGC 1535
Query 1464 GACATTAGATGAGGAAAAGGTTGAGCAGGGCTGGAGCAATAAGAATGTAGAGAGGGTAGA 1523
||||||||||||||||||||||| |||||| |||| ||||||||| ||||||||||||||
Sbjct 1536 GACATTAGATGAGGAAAAGGTTGGGCAGGGATGGAACAATAAGAAAGTAGAGAGGGTAGA 1595
Query 1524 AGTAGATTTAGGAAAAATGAAACTAAGAGATTGGTTTGAGGCCATAGAGGTTCAACTGCC 1583
|||| |||||| |||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1596 AGTATATTTAGAAAAAATGAAACTAAGAGAATGGTTTGATGCCATAGAGGTTCAACTGCC 1655
Query 1584 AAAACAGATAATTGAAGAGACAGAGAAGATGATAGAGCCCATGAGAAGTAAGAGTATGAG 1643
|||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1656 AAAACAGACAATTGAAGAAACAGAGAAGATGATTGAGCCCATGAGAAGTAAGAGTATGAG 1715
Query 1644 AGTTCACAAGCATATTGCAGAGCAAAAGGAAAAGGGCG 1681
||||||||||||||||||||||||||||||||||||||
Sbjct 1716 AGTTCACAAGCATATTGCAGAGCAAAAGGAAAAGGGCG 1753
Score = 992 bits (537), Expect = 0.0
Identities = 611/646 (95%), Gaps = 8/646 (1%)
Strand=Plus/Plus
Query 1 ATGGTTCCGCCATTGCTGAAGCTTGACTTCACCCAGGGTCCAAGAGCTGGCGATTCTCTA 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTTCCGCCATTGCTGAAGCTCGACTTCACCCAGGGTCCAAGAGCTGGCGATTCTCTA 60
Query 61 GGGTTTAAACCCGGATCCACTATCCGGATCGGTCGATTCGTCCGTGGTAATGAAATCGCC 120
|||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||
Sbjct 61 GGGTTTAAACCCGGATCCACTATCCGAATTGGTCGAATCGTCCGTGGTAATGAAATCGCC 120
Query 121 ATAAAAGACGCTGGAATCTCTACCAAGCACCTCCGGATCGTCTCCGATTCTGAGAACTGG 180
|| |||||||| |||||||| |||||||||||||||||||| |||||||| |||||||||
Sbjct 121 ATCAAAGACGCCGGAATCTCCACCAAGCACCTCCGGATCGTTTCCGATTCCGAGAACTGG 180
Query 181 ATAATCCACGATCTTGGGTCTTCCAACGGCACCATATTGAACTCGGAGACTATTGACCCA 240
||||||||||||||||| |||||||||||||||||||||||||| || ||||| ||| ||
Sbjct 181 ATAATCCACGATCTTGGTTCTTCCAACGGCACCATATTGAACTCTGACACTATCGACTCA 240
Query 241 GATACGCCCATCAATCTTAGCCATGGAGACGAAATTAAGCTTGGTGAGTATACTTCCATT 300
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 GATACGCCCGTCAATCTTAGCCATGGAGACGAAATTAAGCTTGGTGAGTACACTTCCATT 300
Query 301 TTGGTGAACTTTGTGAGTGATGTTGTTCAGGCGCCGCAGGAGCATAAGCTTCCGCCCAGG 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTGGTGAACTTTGGGAGTGATGTTGTTCAGGCGCCGCAGGAGCATAAGCTTCCGCCCAGG 360
Query 361 CCAAGGAGGAACAACAAGCGTCTTGCTG-TT----T-CGGATCCGGATCCTATTGAGTCG 414
|||||||||||||||||||| ||||||| || | |||||||||||||||||||||||
Sbjct 361 CCAAGGAGGAACAACAAGCGGCTTGCTGCTTCGGATCCGGATCCGGATCCTATTGAGTCG 420
Query 415 GTTCAGGAGAAACCAAAGCGCACGCGTGGATCGTCGAAGCAAGAGGAAAATGAACTGCCC 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTTCAGGAGAAACCAAAGCGCACGCGTGGATCGTCGAAGCAAGAGGAAAATGAACTGCCC 480
Query 475 AAGA-TAACTAGGGCTTCGAGGAAGAAGACTCTGGACGATATCGCCGATAAAGAAGAGGA 533
|||| || |||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 481 AAGAGTA-CTAGGGCTTCGAGGAAAAAGAATCTGGACGATATCGCCGATAAAGAAGAGGA 539
Query 534 ATTGGAGGTGGAAATTGAGAAGAAAGTCAAATCTAGGGTTGGGAGGCCTCGGAAGAACGC 593
|||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 540 ATTGGATGTGGAAATTGAGAAGGTGGTCAAAGCTAGGGTTGGGAGGCCTCGGAAGAACGC 599
Query 594 AGGCAGTGCAGTTACGAAGGAAGAAGAAGTTGTGGAGGAGAAAAAA 639
|||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 600 AGGCAGTGCAATTGCGAAGGAAGAAGAAGTTGTGGAGGAGAAAAAA 645
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83081901975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5