BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477478
Length=1137
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02440.1 | Symbols: TBL20 | TRICHOME BIREFRINGENCE-LIKE 20 |... 1659 0.0
> AT3G02440.1 | Symbols: TBL20 | TRICHOME BIREFRINGENCE-LIKE 20
| chr3:500804-502229 REVERSE LENGTH=1122
Length=1122
Score = 1659 bits (898), Expect = 0.0
Identities = 1064/1141 (93%), Gaps = 23/1141 (2%)
Strand=Plus/Plus
Query 1 ATGGAACTTCCCGCGACAAAGTTACGAATAGGATTAGTGATATTTCCTCTTATTCTACTT 60
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGGAACTTCCTGCGACAAAGTTACGAATAGGACTAGTGATATTTCCTCTTATTCTACTT 60
Query 61 ACAATAGCTCCAATCCTTTATCTCTTTTTTGGTTATCCTATCTATTATTCAACATCATCA 120
|| |||||||||||||||||||||||||||||||||||| |||||||||| | | |||||
Sbjct 61 ACGATAGCTCCAATCCTTTATCTCTTTTTTGGTTATCCTCTCTATTATTC-A-A-CATCA 117
Query 121 ATATACAAACATTTATCGAATtcatca---tcatcggcaatatcttatccatctaggtat 177
| ||||||||||||||||||||||||| || ||||||||||||| |||||||||||||
Sbjct 118 ACATACAAACATTTATCGAATTCATCATCGTCGTCGGCAATATCTTCTCCATCTAGGTAT 177
Query 178 aatcattcatctagttcatcatcatcagatta-ttataagacatcatcatcagaagattc 236
|| || | || | |||||||||||||| || ||||||| | ||||||||||
Sbjct 178 AACCA-T--TC-A--TCATCATCATCAGA-TAGTTATAAG--------A-CAGAAGATTC 221
Query 237 agaACCATCGTTGTATGATAATGGTTATGACGACACATATCATGATCCCAAGTCATCATC 296
||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 222 AGAACCATCGTCGTATGATAATGATTACGACGACACATATCATGATCCCAAGTCATCATC 281
Query 297 TTTGCATAACAATGATCGTCTATCCATCTCATCATTGAATGTTGATCATCAAGAAACTCC 356
||||||||||||||||||||||||||||||||||| ||||| | ||||||||| ||||||
Sbjct 282 TTTGCATAACAATGATCGTCTATCCATCTCATCATCGAATGGTCATCATCAAGTAACTCC 341
Query 357 TAAGAAAGAGCGTCGCCGGAAAAAGAGAAAACGGAACTGCGATATATTCTCCGGCGAGTG 416
||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 342 TAAGAAAGAGCACCGCCGGAAAAAGAGAAAACGTAAATGCGATATATTCTCCGGCGAGTG 401
Query 417 GATCCCAAACCCTGAAGCCCCGTACTACACAAACACGACATGCAGGGCGATACACGAACA 476
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 GATCCCAAACCCTAAAGCCCCGTACTACACAAACACGACATGCAGGGCGATACACGAACA 461
Query 477 CCAAAACTGCATGAAGTTTGGGAGACCTGATTTAGGTTTCATGAAATGGAGATGGAAACC 536
|||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 462 CCAAAACTGCATCAAGTATGGAAGACCTGATTTAGGTTTCATGAAATGGAGATGGAAACC 521
Query 537 AAAAGAATGTGAGCTTCCTCTGTTTGATCCTTACGAGTTTCTGGAGATAGTTAGAGGAAA 596
||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 522 TAAAGAATGTGATCTCCCTCTGTTTGATCCTTACGAGTTTCTGGAAATAGTTAGAGGAAC 581
Query 597 AAGAATGGCGTTTGTTGGTGACTCCGTTAGCAGAAACCACGTTCAGTCTTTGATCTGCCT 656
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 AAGAATGGCGTTCGTTGGTGACTCCGTTAGCAGAAACCACGTTCAGTCTTTGATCTGCCT 641
Query 657 ACTCTCTCGGGTGGAACATCCTGAGGATGACTCACAACAGGACTTTAATTTCCAAAGATG 716
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||
Sbjct 642 ACTCTCTCGGGTGGAACATCCTGAGGGTGACTCACAACAGGAGTTTAATTTCCAACGATG 701
Query 717 GAAATACAAAACGTACAACTTCACGATTGCCACATTTTGGACAACCCATTTGGTTCGTGC 776
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 702 GAAATACAAAACGTACAACTTCACGATCGCCACATTTTGGACAACACATTTGGTTCGCGC 761
Query 777 TGAAGAAACCGAGACTGGTCCGGCAGGTCCTAATTCATTTTACAATCTCTACCTCGACGA 836
||||||||| || || |||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 762 TGAAGAAACGGAAACCGGTCCGACAGGTCCTAATTCATTCTACAATCTCTACCTCGACGA 821
Query 837 ACCTGACCCAACTTGGGCTTCCCAAATCGTTGAGTTCGATTACATCATCATCTCCTCTGG 896
||||||||| ||||||||||||||||||| ||||||||||||||| |||||||| |||||
Sbjct 822 ACCTGACCCTACTTGGGCTTCCCAAATCGGTGAGTTCGATTACATAATCATCTCATCTGG 881
Query 897 ACAATGGTTTTTCCGACCACTCTTCCTTTTCGACAAACAAAAAAGGATAGGATGCTTGTA 956
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 882 ACAATGGTTTTTCCGACCACTCTTCCTTTTCGACAAACAAAAAAGGATAGGATGTTTGTA 941
Query 957 TTGTTACATTCCCGGAGTCAGAAATGTCGGGGCACATTTCGCGTATAGAAGAGCATTGAG 1016
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 TTGCTACATTCCCGGAGTCAGAAATGTCGGGGCACATTTCGCGTATAGAAGAGCATTGAG 1001
Query 1017 AACAACGTTTAAGACCATTCTTGGATTAGAGAATTTTAAAGGAGAAGTGTTTCTAAGGAC 1076
|||||| || ||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1002 AACAACATTCAAGACAATTCTTGGATTAGAGAATTTTAAAGGAGAAGTGTTTCTGAGGAC 1061
Query 1077 ATTTGCACCTTCACATTTTGAAGATGGAGAATGGGATAAAGGAGCAATGAGACAGAGTTA 1136
|||||| ||||||||||| |||| |||||||||||| |||||||||||||||||||||||
Sbjct 1062 ATTTGCTCCTTCACATTTCGAAGGTGGAGAATGGGACAAAGGAGCAATGAGACAGAGTTA 1121
Query 1137 G 1137
|
Sbjct 1122 G 1122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55772805495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5