BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477478 Length=1137 Score E Sequences producing significant alignments: (Bits) Value AT3G02440.1 | Symbols: TBL20 | TRICHOME BIREFRINGENCE-LIKE 20 |... 1659 0.0 > AT3G02440.1 | Symbols: TBL20 | TRICHOME BIREFRINGENCE-LIKE 20 | chr3:500804-502229 REVERSE LENGTH=1122 Length=1122 Score = 1659 bits (898), Expect = 0.0 Identities = 1064/1141 (93%), Gaps = 23/1141 (2%) Strand=Plus/Plus Query 1 ATGGAACTTCCCGCGACAAAGTTACGAATAGGATTAGTGATATTTCCTCTTATTCTACTT 60 ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1 ATGGAACTTCCTGCGACAAAGTTACGAATAGGACTAGTGATATTTCCTCTTATTCTACTT 60 Query 61 ACAATAGCTCCAATCCTTTATCTCTTTTTTGGTTATCCTATCTATTATTCAACATCATCA 120 || |||||||||||||||||||||||||||||||||||| |||||||||| | | ||||| Sbjct 61 ACGATAGCTCCAATCCTTTATCTCTTTTTTGGTTATCCTCTCTATTATTC-A-A-CATCA 117 Query 121 ATATACAAACATTTATCGAATtcatca---tcatcggcaatatcttatccatctaggtat 177 | ||||||||||||||||||||||||| || ||||||||||||| ||||||||||||| Sbjct 118 ACATACAAACATTTATCGAATTCATCATCGTCGTCGGCAATATCTTCTCCATCTAGGTAT 177 Query 178 aatcattcatctagttcatcatcatcagatta-ttataagacatcatcatcagaagattc 236 || || | || | |||||||||||||| || ||||||| | |||||||||| Sbjct 178 AACCA-T--TC-A--TCATCATCATCAGA-TAGTTATAAG--------A-CAGAAGATTC 221 Query 237 agaACCATCGTTGTATGATAATGGTTATGACGACACATATCATGATCCCAAGTCATCATC 296 ||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct 222 AGAACCATCGTCGTATGATAATGATTACGACGACACATATCATGATCCCAAGTCATCATC 281 Query 297 TTTGCATAACAATGATCGTCTATCCATCTCATCATTGAATGTTGATCATCAAGAAACTCC 356 ||||||||||||||||||||||||||||||||||| ||||| | ||||||||| |||||| Sbjct 282 TTTGCATAACAATGATCGTCTATCCATCTCATCATCGAATGGTCATCATCAAGTAACTCC 341 Query 357 TAAGAAAGAGCGTCGCCGGAAAAAGAGAAAACGGAACTGCGATATATTCTCCGGCGAGTG 416 ||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 342 TAAGAAAGAGCACCGCCGGAAAAAGAGAAAACGTAAATGCGATATATTCTCCGGCGAGTG 401 Query 417 GATCCCAAACCCTGAAGCCCCGTACTACACAAACACGACATGCAGGGCGATACACGAACA 476 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 402 GATCCCAAACCCTAAAGCCCCGTACTACACAAACACGACATGCAGGGCGATACACGAACA 461 Query 477 CCAAAACTGCATGAAGTTTGGGAGACCTGATTTAGGTTTCATGAAATGGAGATGGAAACC 536 |||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct 462 CCAAAACTGCATCAAGTATGGAAGACCTGATTTAGGTTTCATGAAATGGAGATGGAAACC 521 Query 537 AAAAGAATGTGAGCTTCCTCTGTTTGATCCTTACGAGTTTCTGGAGATAGTTAGAGGAAA 596 ||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 522 TAAAGAATGTGATCTCCCTCTGTTTGATCCTTACGAGTTTCTGGAAATAGTTAGAGGAAC 581 Query 597 AAGAATGGCGTTTGTTGGTGACTCCGTTAGCAGAAACCACGTTCAGTCTTTGATCTGCCT 656 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 582 AAGAATGGCGTTCGTTGGTGACTCCGTTAGCAGAAACCACGTTCAGTCTTTGATCTGCCT 641 Query 657 ACTCTCTCGGGTGGAACATCCTGAGGATGACTCACAACAGGACTTTAATTTCCAAAGATG 716 |||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||| Sbjct 642 ACTCTCTCGGGTGGAACATCCTGAGGGTGACTCACAACAGGAGTTTAATTTCCAACGATG 701 Query 717 GAAATACAAAACGTACAACTTCACGATTGCCACATTTTGGACAACCCATTTGGTTCGTGC 776 ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || Sbjct 702 GAAATACAAAACGTACAACTTCACGATCGCCACATTTTGGACAACACATTTGGTTCGCGC 761 Query 777 TGAAGAAACCGAGACTGGTCCGGCAGGTCCTAATTCATTTTACAATCTCTACCTCGACGA 836 ||||||||| || || |||||| |||||||||||||||| |||||||||||||||||||| Sbjct 762 TGAAGAAACGGAAACCGGTCCGACAGGTCCTAATTCATTCTACAATCTCTACCTCGACGA 821 Query 837 ACCTGACCCAACTTGGGCTTCCCAAATCGTTGAGTTCGATTACATCATCATCTCCTCTGG 896 ||||||||| ||||||||||||||||||| ||||||||||||||| |||||||| ||||| Sbjct 822 ACCTGACCCTACTTGGGCTTCCCAAATCGGTGAGTTCGATTACATAATCATCTCATCTGG 881 Query 897 ACAATGGTTTTTCCGACCACTCTTCCTTTTCGACAAACAAAAAAGGATAGGATGCTTGTA 956 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 882 ACAATGGTTTTTCCGACCACTCTTCCTTTTCGACAAACAAAAAAGGATAGGATGTTTGTA 941 Query 957 TTGTTACATTCCCGGAGTCAGAAATGTCGGGGCACATTTCGCGTATAGAAGAGCATTGAG 1016 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 942 TTGCTACATTCCCGGAGTCAGAAATGTCGGGGCACATTTCGCGTATAGAAGAGCATTGAG 1001 Query 1017 AACAACGTTTAAGACCATTCTTGGATTAGAGAATTTTAAAGGAGAAGTGTTTCTAAGGAC 1076 |||||| || ||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1002 AACAACATTCAAGACAATTCTTGGATTAGAGAATTTTAAAGGAGAAGTGTTTCTGAGGAC 1061 Query 1077 ATTTGCACCTTCACATTTTGAAGATGGAGAATGGGATAAAGGAGCAATGAGACAGAGTTA 1136 |||||| ||||||||||| |||| |||||||||||| ||||||||||||||||||||||| Sbjct 1062 ATTTGCTCCTTCACATTTCGAAGGTGGAGAATGGGACAAAGGAGCAATGAGACAGAGTTA 1121 Query 1137 G 1137 | Sbjct 1122 G 1122 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55772805495 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5