BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477479
Length=1724
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02460.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfami... 2604 0.0
AT5G15930.1 | Symbols: PAM1 | plant adhesion molecule 1 | chr5:... 1029 0.0
> AT3G02460.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily
protein | chr3:505434-508428 FORWARD LENGTH=1896
Length=1896
Score = 2604 bits (1410), Expect = 0.0
Identities = 1639/1743 (94%), Gaps = 41/1743 (2%)
Strand=Plus/Plus
Query 1 CTAAAACTTTATGAATCATAAATTCATAATCGTCGTGATAAAGCCTCTTATTACCCAAAA 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 5 CTAAAACTTTATGAATCATAAATTCATAATCGTCGTGATAAAGCCTCTAATTACCCAAAA 64
Query 61 TCGTACTCAAtttttttttAAAAAATAAAATCTTTTAGTTCTCACCAAACTTAGCAAGTT 120
|||| ||||| |||| |||||| |||||||||||| |||||||||||||||||||
Sbjct 65 TCGTGCTCAA------TTTAGAAAATAGAATCTTTTAGTTGTCACCAAACTTAGCAAGTT 118
Query 121 GGCATAACCA-TATTTTAATCA-AATAATA-T-TCTCGACGTCGTCGTTTCGTGCTGGCT 176
|||||||||| | |||||||| ||||||| | |||||||| ||||||||||||||||||
Sbjct 119 GGCATAACCACCA-TTTAATCATAATAATACTCTCTCGACGGCGTCGTTTCGTGCTGGCT 177
Query 177 TCACTTGAATTATTATTATTTTTCTGGCTGGACTCATA---T-T---------aaaaaa- 222
||||||| | ||||||||||||||||||||||||||| | | ||||||
Sbjct 178 TCACTTG-A--ATTATTATTTTTCTGGCTGGACTCATATTTTCTCCGGCAAGGAAAAAAG 234
Query 223 aaaaaCATCACTTTCTTCAAGCGGATGAAAAATTCAAAGATTGAGTCACCACCACCATAA 282
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 AAAAACATCACTTTCTTCAAGCGGATGAAAAATTCAAAGATTGAGTCACCACCACCATAG 294
Query 283 TAACATACGCGTTTGAGTTCCCAGATGTGATCTCCATCCAACGTTGTATTTCTTTCGCTT 342
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 295 TAATATACGCGTATGAGTTCCCAGATGTGATCTCCATCCAACGTTGTATTTCTTTCGTTT 354
Query 343 TGGTTATCTTCTTCAATTCCATCGAATTCCAACAATTCTCATCGAGGAATTTTGTTTCGA 402
|||||||||||||| |||||||||||||||||||||| ||||||||||||| ||| |||
Sbjct 355 TGGTTATCTTCTTCGGTTCCATCGAATTCCAACAATTCCCATCGAGGAATTTGGTTACGA 414
Query 403 ATCTTTTGATCTGACTAAACGTAGGCAGCTTGATCAAAAGGAGACTGAAACCAATGCTAG 462
|||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||
Sbjct 415 ATCTTTTGATCTGACTAAACCTAGGGAGCTTGATCACAAGGAGACTGAAACCAATGCTAG 474
Query 463 GAGGAGTCTCTTCAGGTTAGTAGAGAATGAGTAGAAAAAGAACCGAAAATGGCAGTGAAT 522
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 475 GAGGAGTCTCTTCAGGTTAGT--AGAATGAGTAGAAAAAGAACGGAAAATGGCAGTGAAT 532
Query 523 CAGCACCAGTCACTTCTCATGTTCCCGTGGATAGATTCGGGTTTCTCAAGCAAGAACATG 582
||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 533 CAGGACCAGCCACTTCTCATGTTCCTGTGGATAGATTCGGGTTTCTCAAGCAAGAACATG 592
Query 583 GCAATTCTTCGCCTGAGCGTTTTAGCAAGTCTAGAACTACATCATCCACTGACCATGACA 642
||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 593 CCAA---TTCGCCTGAGCGTTTTAGCAAGTCTAAAACTACATCATCCACTGATCATGACA 649
Query 643 GAGAGGAGAGAAAGGTGAGAAAATGGAGGAAGATGATTGGGGTTGGAGGTAGTGATTGGA 702
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 650 GAGAGGAGAGAAAGGTGAGAAAATGGAGGAAGATGATTGGGGTTGGAGGGAGTGATTGGA 709
Query 703 AGCATTATGTTAGGAGAAAACCTAATGTTGTCCGAAGGCGTATACGAAAAGGGATCCCTG 762
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 710 AGCATTATGTTAGGAGAAAACCTAATGTTGTCAGAAGGCGTATACGAAAAGGGATCCCTG 769
Query 763 ATTGCTTAAGAGGTCTTGTTTGGCAGTTAATCTCAGGAAGTCGGGACCTTTTGCTTATGA 822
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 770 ATTGCTTACGAGGTCTTGTTTGGCAGTTAATCTCAGGAAGTCGAGACCTTTTGCTTATGA 829
Query 823 ATCCTGGTGTTTATGAGCAATTGGTGATTTATGAAACATCGGCATCAGAGCTTGATATCA 882
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 830 ATCCTGGTGTTTATGAGCAATTGGTGATTTATGAAACATCTGCATCAGAGCTTGATATCA 889
Query 883 TTCGAGACATATCCCGTACTTTCCCATCACATGTTTTCTTTCAGAAGAGACATGGACCCG 942
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 890 TTCGAGACATATCCCGTACTTTCCCATCACATGTTTTCTTTCAGAAGAGACATGGACCTG 949
Query 943 GGCAAAGATCGTTGTACAATGTCCTTAAGGCGTACTCAGTTTATGACAGAGATGTTGGAT 1002
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 950 GGCAAAGATCCTTGTACAATGTCCTTAAGGCATACTCAGTTTATGACAGAGATGTCGGAT 1009
Query 1003 ATGTTCAGGGGATGGGGTTTATAGCGGGTTTGTTGCTTCTGTATATGAGCGAAGAAGATG 1062
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1010 ATGTTCAGGGGATGGGGTTTATAGCCGGTTTGTTGCTTCTCTATATGAGCGAAGAAGATG 1069
Query 1063 CGTTCTGGTTATTAGTTGCATTACTAAAAGGAGCTGTTCATGCTCCAATGGAAGGATTGT 1122
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 1070 CCTTCTGGTTATTAGTTGCATTACTTAAAGGAGCTGTTCATGCTCCAATGGAAGGACTGT 1129
Query 1123 ATCACGCAGGGCTTCCTCTTGTACAGCAATACCTGTTTCAGTTAGAAAGCTTGGTAAAAG 1182
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 ATCATGCAGGGCTTCCCCTTGTACAGCAATACCTGTTTCAGTTAGAAAGCTTGGTAAAAG 1189
Query 1183 AGCTAATTCCGAAGCTCGGAGAACATTTTACTCAAGAAATGATTACTCCAAGTATGTATG 1242
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1190 AGCTAATTCCGAAGCTCGGAGAACATTTTACTCAAGAAATGATTAATCCGAGTATGTATG 1249
Query 1243 CAAGTCAATGGTTCATCACCGTCTTCTCTTATTCATTTCCTTTCCCTTTGGCTCTACGGA 1302
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1250 CAAGTCAATGGTTCATCACCGTCTTCTCATACTCATTTCCTTTCCCTTTGGCTCTACGGA 1309
Query 1303 TATGGGATGTGTTTCTCTCTGAGGGTGTTAAAATCGTGTTCAAAGTGAGCTTAGCATTGC 1362
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1310 TATGGGATGTGTTTCTCTCCGAGGGTGTTAAAATCGTGTTCAAAGTGGGCTTAGCATTGC 1369
Query 1363 TGAAGTATTGCCAAGATGAGTTGGTAAAATTACCGTTTGAGAAACTAATACATGCTCTGA 1422
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1370 TCAAGTATTGCCAAGATGAGTTGGTAAAGTTACCGTTTGAGAAACTAATACATGCTCTGA 1429
Query 1423 AAACTTTCCCGGAAGACGCAATGAATCCGGATACCTTGCTTCCATTGGCTTACCCTATCA 1482
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1430 AAACTTTCCCGGAAGACGCAATGAATCCGGATACCTTGCTTCCATTGGCTTACTCTATCA 1489
Query 1483 AGGTATCAAAGCGTTTGGAAGAACTGAAACTGGAGTATGAGAAGAATAATGCCAAACCGG 1542
||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||
Sbjct 1490 AGGTATCAAAGCGTTTGGAAGAACTGACACTGGAGTATCAGAAGACTAATGCCAAACCGG 1549
Query 1543 TTCAACCGTAGGAATGGAAAACTGGTTGGCAATAACCAGAAGCAGAAGTTGGATTCGAAT 1602
|||||||||||||| | | |||||||||||||| ||| ||||||||||||||||||
Sbjct 1550 TTCAACCGTAGGAA---ATC-C-GGTTGGCAATAACCTGAACCAGAAGTTGGATTCGAAT 1604
Query 1603 TCGTTTG-TCATCCTTATCTTTTCTTGTTGGAATATATTCTTTTTTCATCATATTTGTCA 1661
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1605 TCGTTTTCTCATC-TTATCTTTTCTTGTTGGAATATATTCTTTTTTCATCATATT-GTCA 1662
Query 1662 AGTTGGGTGGGAATTTCTGATCAGAAGCTCTCTCATTCTTTTTAGCAATTTCGTGGAAAT 1721
|||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||
Sbjct 1663 AGTTGGGTGGGAATTTCTTATCAGAAGCTCTCTGATTGTTTTTAGCAATTTCGTGGAAAA 1722
Query 1722 GAA 1724
|||
Sbjct 1723 GAA 1725
> AT5G15930.1 | Symbols: PAM1 | plant adhesion molecule 1 | chr5:5199711-5202452
FORWARD LENGTH=1529
Length=1529
Score = 1029 bits (557), Expect = 0.0
Identities = 901/1063 (85%), Gaps = 40/1063 (4%)
Strand=Plus/Plus
Query 477 GGTTAGTAGAGAAT-GAGTAGAAAAAGAACCGAAAATGG-CAGTGAATCAGCACCAGTCA 534
||||||| | ||| ||| |||||||||| | ||| || ||||||| ||| |||||||
Sbjct 247 GGTTAGT-TA-AATGGAG-AGAAAAAGAA-C--AAA-GGACAGTGAACCAGGACCAGTC- 298
Query 535 CTTCT-CATGTTCCCGTGGATAGATTCGGGTTTCTCAAGCAAGAACATGGCAATTCTTCG 593
| ||| | ||| || || |||||||| |||||||| || || |||||||||| ||| |
Sbjct 299 CCTCTGCTTGTACCGGTTGATAGATTTGGGTTTCTGAAACAGGAACATGGCAGTTC-T-- 355
Query 594 CCTGAGCGTTTTAGCAAGTCTAGAACTACATCATCCACTGACCATGACAGAGAGGA-GAG 652
||| | ||||| | |||| ||| || | |||| | | | | ||| ||| |||| |||
Sbjct 356 CCTCAACGTTTCACCAAGACTA-AA-T-CATC-T--ATTAATTATG--AGA-AGGAGGAG 406
Query 653 AA-AG-GTGAGAAAATGGAGGAAGATGATTGGGGTTGGAGGTAGTGATTGGAAGCATTAT 710
|| || |||| ||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 407 AAGAGAGTGACAAAATGGAGGAAGATGATTGGAACTGGGGGTAGTGATTGGAAGCATTAC 466
Query 711 GTTAGGAGAAAACCTAATGTTGTCCGA-AGGCGTATACGAAAAGGGATCCCTGATTGCTT 769
||||||||||||||| ||||||| | | ||||| || |||||||||||||||||||||||
Sbjct 467 GTTAGGAGAAAACCTCATGTTGT-CAAGAGGCGGATTCGAAAAGGGATCCCTGATTGCTT 525
Query 770 AAGAGGTCTTGTTTGGCAGTTAATCTCAGGAAGTCGGGACCTTTTGCTTATGAATCCTGG 829
||| ||||| |||||||| || ||||| |||||||| |||||||||||||||||||| ||
Sbjct 526 AAGGGGTCTCGTTTGGCAATTGATCTCTGGAAGTCGAGACCTTTTGCTTATGAATCCCGG 585
Query 830 TGTTTATGAGCAATTGGTGATTTATGAAACATCGGCATCAGAGCTTGATATCATTCGAGA 889
|||||||| |||| ||||||||||||| || ||||||||||| || ||||||||||| ||
Sbjct 586 TGTTTATGTGCAACTGGTGATTTATGAGACGTCGGCATCAGAACTCGATATCATTCGGGA 645
Query 890 CATATCCCGTACTTTCCCATCACATGTTTTCTTTCAGAAGAGACATGGACCCGGGCAAAG 949
||||| ||||||||||| |||||||||||||| ||||||||||||||||| || |||||
Sbjct 646 TATATCTCGTACTTTCCCGTCACATGTTTTCTTCCAGAAGAGACATGGACCAGGCCAAAG 705
Query 950 ATCGTTGTACAATGTCCTTAAGGCGTACTCAGTTTATGACAGAGATGTTGGATATGTTCA 1009
||| || |||||||| || || || ||||| || |||||||||||||| |||||||||||
Sbjct 706 ATCATTATACAATGTTCTAAAAGCATACTCTGTCTATGACAGAGATGTCGGATATGTTCA 765
Query 1010 GGGGATGGGGTTT-ATAGCGGGTTTGTTGCTTCTGTATATGAGCGAAGAAGATGCGTTCT 1068
||| || |||||| ||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct 766 GGGAAT-GGGTTTCATAGCCGGTTTGTTGCTTCTTTATATGAGCGAAGAAGATGCATTCT 824
Query 1069 GGTTATTAGTTGCATTACTAAAAGGAGCTGTTCA-TGCTCCAATGGAAGGATTGTATCAC 1127
||||||||||||||||||| ||||||||||| || | | ||||| ||||||||||||||
Sbjct 825 GGTTATTAGTTGCATTACTCAAAGGAGCTGTCCACT-CCCCAATAGAAGGATTGTATCAG 883
Query 1128 GCAGGGCTTCCTCTTGTACAGCAATACCTGTTTCAGTTAGA-AAGCTTGGTAAAAGAGCT 1186
|||||||||||||||||||||||||| ||||| ||||| || || ||||||| ||||||
Sbjct 884 GCAGGGCTTCCTCTTGTACAGCAATATCTGTTACAGTTTGATCAG-TTGGTAAGAGAGCT 942
Query 1187 AATTCCGAAGCTCGGAGAACATTTTACTCAAGAAATGATTACTCCAAGTATGTATGCAAG 1246
||| || || || ||||||||||| |||||||||||||| | ||| ||||||||||||||
Sbjct 943 AATGCCCAAACTAGGAGAACATTTCACTCAAGAAATGATCAATCCGAGTATGTATGCAAG 1002
Query 1247 TCAATGGTTCATCACCGTCTTCTCTTATTCATTTCCTTTCCCTTTGGCTCTACGGATATG 1306
|||||||||||| |||||||| || |||||| ||||||||| || || ||||| || ||
Sbjct 1003 TCAATGGTTCATAACCGTCTTTTCGTATTCACTTCCTTTCCATTCAGCGCTACGAATTTG 1062
Query 1307 GGATGTGTTTCTCTCTGAGGGTGTTAAAATCGTGTTCAAAGT-GAGCTTAGCATTGCTGA 1365
|||||||||||| |||||||||||||||||||||||||||| | | |||||||| |||
Sbjct 1063 GGATGTGTTTCTAGCTGAGGGTGTTAAAATCGTGTTCAAAGTCG-GTTTAGCATTATTGA 1121
Query 1366 AGTATTGCCAAGATGAGTTGGTAAAATTACCGTTTGAGAAACTAATACATGCTCTGAA-A 1424
|| ||||||| ||||| ||| | ||||| || |||||| |||| || |||||||||| |
Sbjct 1122 AGCATTGCCATGATGATTTGTTGAAATTGCCATTTGAGGAACTCATGCATGCTCTGAGGA 1181
Query 1425 ACTTTCCCGGAAGACGCAATGAATCCGGATACCTTGCTTCCATTGGCTTAC-CCTATCAA 1483
| |||||| ||||| || ||| |||| ||||| ||||||||||||||||| || || ||
Sbjct 1182 A-TTTCCCTGAAGATGCCATGGATCCTGATACTTTGCTTCCATTGGCTTATTCC-ATTAA 1239
Query 1484 GGTATCAAAGCGTTTGGAAGAACTGAAACTGGAGTATGAGAAG 1526
|||||||||||||||||||||| |||||| ||| | ||| |||
Sbjct 1240 GGTATCAAAGCGTTTGGAAGAAATGAAACAGGATTGTGACAAG 1282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85240525410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5