BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477479 Length=1724 Score E Sequences producing significant alignments: (Bits) Value AT3G02460.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfami... 2604 0.0 AT5G15930.1 | Symbols: PAM1 | plant adhesion molecule 1 | chr5:... 1029 0.0 > AT3G02460.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr3:505434-508428 FORWARD LENGTH=1896 Length=1896 Score = 2604 bits (1410), Expect = 0.0 Identities = 1639/1743 (94%), Gaps = 41/1743 (2%) Strand=Plus/Plus Query 1 CTAAAACTTTATGAATCATAAATTCATAATCGTCGTGATAAAGCCTCTTATTACCCAAAA 60 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 5 CTAAAACTTTATGAATCATAAATTCATAATCGTCGTGATAAAGCCTCTAATTACCCAAAA 64 Query 61 TCGTACTCAAtttttttttAAAAAATAAAATCTTTTAGTTCTCACCAAACTTAGCAAGTT 120 |||| ||||| |||| |||||| |||||||||||| ||||||||||||||||||| Sbjct 65 TCGTGCTCAA------TTTAGAAAATAGAATCTTTTAGTTGTCACCAAACTTAGCAAGTT 118 Query 121 GGCATAACCA-TATTTTAATCA-AATAATA-T-TCTCGACGTCGTCGTTTCGTGCTGGCT 176 |||||||||| | |||||||| ||||||| | |||||||| |||||||||||||||||| Sbjct 119 GGCATAACCACCA-TTTAATCATAATAATACTCTCTCGACGGCGTCGTTTCGTGCTGGCT 177 Query 177 TCACTTGAATTATTATTATTTTTCTGGCTGGACTCATA---T-T---------aaaaaa- 222 ||||||| | ||||||||||||||||||||||||||| | | |||||| Sbjct 178 TCACTTG-A--ATTATTATTTTTCTGGCTGGACTCATATTTTCTCCGGCAAGGAAAAAAG 234 Query 223 aaaaaCATCACTTTCTTCAAGCGGATGAAAAATTCAAAGATTGAGTCACCACCACCATAA 282 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 235 AAAAACATCACTTTCTTCAAGCGGATGAAAAATTCAAAGATTGAGTCACCACCACCATAG 294 Query 283 TAACATACGCGTTTGAGTTCCCAGATGTGATCTCCATCCAACGTTGTATTTCTTTCGCTT 342 ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 295 TAATATACGCGTATGAGTTCCCAGATGTGATCTCCATCCAACGTTGTATTTCTTTCGTTT 354 Query 343 TGGTTATCTTCTTCAATTCCATCGAATTCCAACAATTCTCATCGAGGAATTTTGTTTCGA 402 |||||||||||||| |||||||||||||||||||||| ||||||||||||| ||| ||| Sbjct 355 TGGTTATCTTCTTCGGTTCCATCGAATTCCAACAATTCCCATCGAGGAATTTGGTTACGA 414 Query 403 ATCTTTTGATCTGACTAAACGTAGGCAGCTTGATCAAAAGGAGACTGAAACCAATGCTAG 462 |||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||| Sbjct 415 ATCTTTTGATCTGACTAAACCTAGGGAGCTTGATCACAAGGAGACTGAAACCAATGCTAG 474 Query 463 GAGGAGTCTCTTCAGGTTAGTAGAGAATGAGTAGAAAAAGAACCGAAAATGGCAGTGAAT 522 ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 475 GAGGAGTCTCTTCAGGTTAGT--AGAATGAGTAGAAAAAGAACGGAAAATGGCAGTGAAT 532 Query 523 CAGCACCAGTCACTTCTCATGTTCCCGTGGATAGATTCGGGTTTCTCAAGCAAGAACATG 582 ||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 533 CAGGACCAGCCACTTCTCATGTTCCTGTGGATAGATTCGGGTTTCTCAAGCAAGAACATG 592 Query 583 GCAATTCTTCGCCTGAGCGTTTTAGCAAGTCTAGAACTACATCATCCACTGACCATGACA 642 ||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||| Sbjct 593 CCAA---TTCGCCTGAGCGTTTTAGCAAGTCTAAAACTACATCATCCACTGATCATGACA 649 Query 643 GAGAGGAGAGAAAGGTGAGAAAATGGAGGAAGATGATTGGGGTTGGAGGTAGTGATTGGA 702 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 650 GAGAGGAGAGAAAGGTGAGAAAATGGAGGAAGATGATTGGGGTTGGAGGGAGTGATTGGA 709 Query 703 AGCATTATGTTAGGAGAAAACCTAATGTTGTCCGAAGGCGTATACGAAAAGGGATCCCTG 762 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 710 AGCATTATGTTAGGAGAAAACCTAATGTTGTCAGAAGGCGTATACGAAAAGGGATCCCTG 769 Query 763 ATTGCTTAAGAGGTCTTGTTTGGCAGTTAATCTCAGGAAGTCGGGACCTTTTGCTTATGA 822 |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 770 ATTGCTTACGAGGTCTTGTTTGGCAGTTAATCTCAGGAAGTCGAGACCTTTTGCTTATGA 829 Query 823 ATCCTGGTGTTTATGAGCAATTGGTGATTTATGAAACATCGGCATCAGAGCTTGATATCA 882 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 830 ATCCTGGTGTTTATGAGCAATTGGTGATTTATGAAACATCTGCATCAGAGCTTGATATCA 889 Query 883 TTCGAGACATATCCCGTACTTTCCCATCACATGTTTTCTTTCAGAAGAGACATGGACCCG 942 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 890 TTCGAGACATATCCCGTACTTTCCCATCACATGTTTTCTTTCAGAAGAGACATGGACCTG 949 Query 943 GGCAAAGATCGTTGTACAATGTCCTTAAGGCGTACTCAGTTTATGACAGAGATGTTGGAT 1002 |||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 950 GGCAAAGATCCTTGTACAATGTCCTTAAGGCATACTCAGTTTATGACAGAGATGTCGGAT 1009 Query 1003 ATGTTCAGGGGATGGGGTTTATAGCGGGTTTGTTGCTTCTGTATATGAGCGAAGAAGATG 1062 ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 1010 ATGTTCAGGGGATGGGGTTTATAGCCGGTTTGTTGCTTCTCTATATGAGCGAAGAAGATG 1069 Query 1063 CGTTCTGGTTATTAGTTGCATTACTAAAAGGAGCTGTTCATGCTCCAATGGAAGGATTGT 1122 | ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 1070 CCTTCTGGTTATTAGTTGCATTACTTAAAGGAGCTGTTCATGCTCCAATGGAAGGACTGT 1129 Query 1123 ATCACGCAGGGCTTCCTCTTGTACAGCAATACCTGTTTCAGTTAGAAAGCTTGGTAAAAG 1182 |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1130 ATCATGCAGGGCTTCCCCTTGTACAGCAATACCTGTTTCAGTTAGAAAGCTTGGTAAAAG 1189 Query 1183 AGCTAATTCCGAAGCTCGGAGAACATTTTACTCAAGAAATGATTACTCCAAGTATGTATG 1242 ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 1190 AGCTAATTCCGAAGCTCGGAGAACATTTTACTCAAGAAATGATTAATCCGAGTATGTATG 1249 Query 1243 CAAGTCAATGGTTCATCACCGTCTTCTCTTATTCATTTCCTTTCCCTTTGGCTCTACGGA 1302 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 1250 CAAGTCAATGGTTCATCACCGTCTTCTCATACTCATTTCCTTTCCCTTTGGCTCTACGGA 1309 Query 1303 TATGGGATGTGTTTCTCTCTGAGGGTGTTAAAATCGTGTTCAAAGTGAGCTTAGCATTGC 1362 ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| Sbjct 1310 TATGGGATGTGTTTCTCTCCGAGGGTGTTAAAATCGTGTTCAAAGTGGGCTTAGCATTGC 1369 Query 1363 TGAAGTATTGCCAAGATGAGTTGGTAAAATTACCGTTTGAGAAACTAATACATGCTCTGA 1422 | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1370 TCAAGTATTGCCAAGATGAGTTGGTAAAGTTACCGTTTGAGAAACTAATACATGCTCTGA 1429 Query 1423 AAACTTTCCCGGAAGACGCAATGAATCCGGATACCTTGCTTCCATTGGCTTACCCTATCA 1482 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1430 AAACTTTCCCGGAAGACGCAATGAATCCGGATACCTTGCTTCCATTGGCTTACTCTATCA 1489 Query 1483 AGGTATCAAAGCGTTTGGAAGAACTGAAACTGGAGTATGAGAAGAATAATGCCAAACCGG 1542 ||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||| Sbjct 1490 AGGTATCAAAGCGTTTGGAAGAACTGACACTGGAGTATCAGAAGACTAATGCCAAACCGG 1549 Query 1543 TTCAACCGTAGGAATGGAAAACTGGTTGGCAATAACCAGAAGCAGAAGTTGGATTCGAAT 1602 |||||||||||||| | | |||||||||||||| ||| |||||||||||||||||| Sbjct 1550 TTCAACCGTAGGAA---ATC-C-GGTTGGCAATAACCTGAACCAGAAGTTGGATTCGAAT 1604 Query 1603 TCGTTTG-TCATCCTTATCTTTTCTTGTTGGAATATATTCTTTTTTCATCATATTTGTCA 1661 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1605 TCGTTTTCTCATC-TTATCTTTTCTTGTTGGAATATATTCTTTTTTCATCATATT-GTCA 1662 Query 1662 AGTTGGGTGGGAATTTCTGATCAGAAGCTCTCTCATTCTTTTTAGCAATTTCGTGGAAAT 1721 |||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||| Sbjct 1663 AGTTGGGTGGGAATTTCTTATCAGAAGCTCTCTGATTGTTTTTAGCAATTTCGTGGAAAA 1722 Query 1722 GAA 1724 ||| Sbjct 1723 GAA 1725 > AT5G15930.1 | Symbols: PAM1 | plant adhesion molecule 1 | chr5:5199711-5202452 FORWARD LENGTH=1529 Length=1529 Score = 1029 bits (557), Expect = 0.0 Identities = 901/1063 (85%), Gaps = 40/1063 (4%) Strand=Plus/Plus Query 477 GGTTAGTAGAGAAT-GAGTAGAAAAAGAACCGAAAATGG-CAGTGAATCAGCACCAGTCA 534 ||||||| | ||| ||| |||||||||| | ||| || ||||||| ||| ||||||| Sbjct 247 GGTTAGT-TA-AATGGAG-AGAAAAAGAA-C--AAA-GGACAGTGAACCAGGACCAGTC- 298 Query 535 CTTCT-CATGTTCCCGTGGATAGATTCGGGTTTCTCAAGCAAGAACATGGCAATTCTTCG 593 | ||| | ||| || || |||||||| |||||||| || || |||||||||| ||| | Sbjct 299 CCTCTGCTTGTACCGGTTGATAGATTTGGGTTTCTGAAACAGGAACATGGCAGTTC-T-- 355 Query 594 CCTGAGCGTTTTAGCAAGTCTAGAACTACATCATCCACTGACCATGACAGAGAGGA-GAG 652 ||| | ||||| | |||| ||| || | |||| | | | | ||| ||| |||| ||| Sbjct 356 CCTCAACGTTTCACCAAGACTA-AA-T-CATC-T--ATTAATTATG--AGA-AGGAGGAG 406 Query 653 AA-AG-GTGAGAAAATGGAGGAAGATGATTGGGGTTGGAGGTAGTGATTGGAAGCATTAT 710 || || |||| ||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 407 AAGAGAGTGACAAAATGGAGGAAGATGATTGGAACTGGGGGTAGTGATTGGAAGCATTAC 466 Query 711 GTTAGGAGAAAACCTAATGTTGTCCGA-AGGCGTATACGAAAAGGGATCCCTGATTGCTT 769 ||||||||||||||| ||||||| | | ||||| || ||||||||||||||||||||||| Sbjct 467 GTTAGGAGAAAACCTCATGTTGT-CAAGAGGCGGATTCGAAAAGGGATCCCTGATTGCTT 525 Query 770 AAGAGGTCTTGTTTGGCAGTTAATCTCAGGAAGTCGGGACCTTTTGCTTATGAATCCTGG 829 ||| ||||| |||||||| || ||||| |||||||| |||||||||||||||||||| || Sbjct 526 AAGGGGTCTCGTTTGGCAATTGATCTCTGGAAGTCGAGACCTTTTGCTTATGAATCCCGG 585 Query 830 TGTTTATGAGCAATTGGTGATTTATGAAACATCGGCATCAGAGCTTGATATCATTCGAGA 889 |||||||| |||| ||||||||||||| || ||||||||||| || ||||||||||| || Sbjct 586 TGTTTATGTGCAACTGGTGATTTATGAGACGTCGGCATCAGAACTCGATATCATTCGGGA 645 Query 890 CATATCCCGTACTTTCCCATCACATGTTTTCTTTCAGAAGAGACATGGACCCGGGCAAAG 949 ||||| ||||||||||| |||||||||||||| ||||||||||||||||| || ||||| Sbjct 646 TATATCTCGTACTTTCCCGTCACATGTTTTCTTCCAGAAGAGACATGGACCAGGCCAAAG 705 Query 950 ATCGTTGTACAATGTCCTTAAGGCGTACTCAGTTTATGACAGAGATGTTGGATATGTTCA 1009 ||| || |||||||| || || || ||||| || |||||||||||||| ||||||||||| Sbjct 706 ATCATTATACAATGTTCTAAAAGCATACTCTGTCTATGACAGAGATGTCGGATATGTTCA 765 Query 1010 GGGGATGGGGTTT-ATAGCGGGTTTGTTGCTTCTGTATATGAGCGAAGAAGATGCGTTCT 1068 ||| || |||||| ||||| |||||||||||||| |||||||||||||||||||| |||| Sbjct 766 GGGAAT-GGGTTTCATAGCCGGTTTGTTGCTTCTTTATATGAGCGAAGAAGATGCATTCT 824 Query 1069 GGTTATTAGTTGCATTACTAAAAGGAGCTGTTCA-TGCTCCAATGGAAGGATTGTATCAC 1127 ||||||||||||||||||| ||||||||||| || | | ||||| |||||||||||||| Sbjct 825 GGTTATTAGTTGCATTACTCAAAGGAGCTGTCCACT-CCCCAATAGAAGGATTGTATCAG 883 Query 1128 GCAGGGCTTCCTCTTGTACAGCAATACCTGTTTCAGTTAGA-AAGCTTGGTAAAAGAGCT 1186 |||||||||||||||||||||||||| ||||| ||||| || || ||||||| |||||| Sbjct 884 GCAGGGCTTCCTCTTGTACAGCAATATCTGTTACAGTTTGATCAG-TTGGTAAGAGAGCT 942 Query 1187 AATTCCGAAGCTCGGAGAACATTTTACTCAAGAAATGATTACTCCAAGTATGTATGCAAG 1246 ||| || || || ||||||||||| |||||||||||||| | ||| |||||||||||||| Sbjct 943 AATGCCCAAACTAGGAGAACATTTCACTCAAGAAATGATCAATCCGAGTATGTATGCAAG 1002 Query 1247 TCAATGGTTCATCACCGTCTTCTCTTATTCATTTCCTTTCCCTTTGGCTCTACGGATATG 1306 |||||||||||| |||||||| || |||||| ||||||||| || || ||||| || || Sbjct 1003 TCAATGGTTCATAACCGTCTTTTCGTATTCACTTCCTTTCCATTCAGCGCTACGAATTTG 1062 Query 1307 GGATGTGTTTCTCTCTGAGGGTGTTAAAATCGTGTTCAAAGT-GAGCTTAGCATTGCTGA 1365 |||||||||||| |||||||||||||||||||||||||||| | | |||||||| ||| Sbjct 1063 GGATGTGTTTCTAGCTGAGGGTGTTAAAATCGTGTTCAAAGTCG-GTTTAGCATTATTGA 1121 Query 1366 AGTATTGCCAAGATGAGTTGGTAAAATTACCGTTTGAGAAACTAATACATGCTCTGAA-A 1424 || ||||||| ||||| ||| | ||||| || |||||| |||| || |||||||||| | Sbjct 1122 AGCATTGCCATGATGATTTGTTGAAATTGCCATTTGAGGAACTCATGCATGCTCTGAGGA 1181 Query 1425 ACTTTCCCGGAAGACGCAATGAATCCGGATACCTTGCTTCCATTGGCTTAC-CCTATCAA 1483 | |||||| ||||| || ||| |||| ||||| ||||||||||||||||| || || || Sbjct 1182 A-TTTCCCTGAAGATGCCATGGATCCTGATACTTTGCTTCCATTGGCTTATTCC-ATTAA 1239 Query 1484 GGTATCAAAGCGTTTGGAAGAACTGAAACTGGAGTATGAGAAG 1526 |||||||||||||||||||||| |||||| ||| | ||| ||| Sbjct 1240 GGTATCAAAGCGTTTGGAAGAAATGAAACAGGATTGTGACAAG 1282 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 85240525410 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5