BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg477484

Length=340
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G02480.1 | Symbols:  | Late embryogenesis abundant protein (...   459    1e-128


> AT3G02480.1 | Symbols:  | Late embryogenesis abundant protein 
(LEA) family protein | chr3:512312-513027 FORWARD LENGTH=449
Length=449

 Score =  459 bits (248),  Expect = 1e-128
 Identities = 283/300 (94%), Gaps = 1/300 (0%)
 Strand=Plus/Plus

Query  1    CGAGAGAAAATGGATAACAAGCAAAACATGAGCTACCAAGCCGGTCAAGCCACTGGCCAG  60
            |||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||
Sbjct  64   CGAGAGAAAATGGACAACAAGCAAAACGCGAGCTACCAAGCCGGTCAAGCCACTGGCCAG  123

Query  61   ACTAAGGAGAAGGCAGGTGGAATGATGGACAAGGCCAAGGATGCTGCTGCTTCAGCTCAG  120
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  124  ACTAAGGAGAAGGCCGGTGGAATGATGGACAAGGCCAAGGATGCTGCTGCTTCAGCTCAA  183

Query  121  GACTCCTTGCAACAGACGGGACAACAAATGACGGAGAAGGTACAAGGAGCTGCTGATGTC  180
            ||||||||||||||||| ||||||||||||| ||||||||  ||||||||||||||||||
Sbjct  184  GACTCCTTGCAACAGACTGGACAACAAATGAAGGAGAAGGCGCAAGGAGCTGCTGATGTC  243

Query  181  GTCAAGGACAAGACCGGCATGAACAAAAACCACTAAGCAAGCACCTTGGACTTCTTTTCT  240
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  244  GTCAAGGACAAGACCGGCATGAACAAAAGCCACTAAGCAAGCACCTTGGACTTCTTTTCT  303

Query  241  AATTAATGCCCCTCTTCGACATGTCTTTTAATAAACTGGGGGTTTTAATTCTCATTTCTG  300
            ||||||| |||||||||||| ||| ||| |||||| | |||||||||||||||||| |||
Sbjct  304  AATTAATTCCCCTCTTCGACTTGTGTTT-AATAAATTTGGGGTTTTAATTCTCATTCCTG  362



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15884608684


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5