BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477488
Length=1670
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02540.1 | Symbols: RAD23-3, RAD23C | Rad23 UV excision repa... 2643 0.0
> AT3G02540.1 | Symbols: RAD23-3, RAD23C | Rad23 UV excision repair
protein family | chr3:532808-536342 REVERSE LENGTH=1738
Length=1738
Score = 2643 bits (1431), Expect = 0.0
Identities = 1571/1639 (96%), Gaps = 7/1639 (0%)
Strand=Plus/Plus
Query 19 GGAGATATCGAGGGAACGCAAAGGTAGGGGCCAGATTCTGTAGTACCCTCTTCACCTACC 78
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 31 GGAGATATCGAGGGAACGCAAAGGTAGGGGCCAGATTCTGTAGTACCTTCTTCGCCTACC 90
Query 79 TACTCTCTTTCTCGAATTTATTTGCCGGCGGCGATCAATCCGAACGGGATTTTAGCCGGA 138
||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||| ||
Sbjct 91 TACTCTCTTTCCCGAATTTATTTGCCGGCGGTGATCAATCAGAACGGGATTTTAGCCTGA 150
Query 139 GTAGTCGGTCACTGGGAAGGGAATTTGGCCGGTGAGAGAAGATGAAGATATTTGTGAAAA 198
||| ||||||||||||||| |||||| | |||||||||||||||||||||||||||||||
Sbjct 151 GTAATCGGTCACTGGGAAGAGAATTTCGACGGTGAGAGAAGATGAAGATATTTGTGAAAA 210
Query 199 CTCTCAAGGGGACTCACTTTGAGATCGAAGTAAAACTCGAGGATTCGGTTGCTGATGTGA 258
||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||
Sbjct 211 CTCTCAAGGGGACTCACTTCGAGATCGAAGTAAAACCCGAGGATTCGGTTGTTGATGTGA 270
Query 259 AGAAGAACATAGAGACTGTGCAGGGCGCAGATGTATATCCTGCTGCAAAACAGATGCTTA 318
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 271 AGAAGAACATAGAGAGTGTGCAGGGCGCAGATGTGTATCCTGCTGCAAAACAGATGCTTA 330
Query 319 TTCACCAAGGTAAAGTTCTTAAAGATGAGACTACTATTGAGGAAAACAAAGTTGCTGAGA 378
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 331 TTCACCAAGGTAAAGTGCTTAAAGATGAGACAACTATTGAGGAAAACAAAGTTGCTGAGA 390
Query 379 ACAGTTTTATTGTCGTAATGATGAACAAGAGTAAACCTGCTTCAACTGGAGCATCTAGTG 438
|||||||||||||| | ||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 391 ACAGTTTTATTGTCATTATGATGAACAAGAGTAAACCTGCTTCAGCTGCAGCATCTAGTG 450
Query 439 CATCTGCTGGCACAGCGCAGGCCAAGTCGACACCTCCCTCAACATCACAGCCTTCAATTT 498
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 451 CATCTGCTGGCACATCGCAGGCCAAGTCGATACCTCCCTCAACATCACAGCCTTCAATTT 510
Query 499 CCCCTCAGACTCCAGCTTCTGTAGCAGCACCAGTGGCACCTGCACCGACACGTGCGCCAC 558
||||||||||||||||||||||| |||||||||||||||||||||| |||||| | ||||
Sbjct 511 CCCCTCAGACTCCAGCTTCTGTATCAGCACCAGTGGCACCTGCACCAACACGTCCACCAC 570
Query 559 CACCTG---C--C-CCGACACCTGCACCTGTAGCTGCAACTGAAACTGTGACTACACCTA 612
|||||| | | ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 571 CACCTGCACCGACACCGACACCTGCACCTGTAGCTGCAACTGAAACTGTGACTACCCCTA 630
Query 613 TACCTGAACCTGTACCTGCTACTATACCATCAAGCACTCCTGCACCAGACTCAGCTCCTG 672
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 631 TACCTGAACCTGTACCTGCTACTATATCATCAAGCACTCCTGCACCAGACTCAGCTCCTG 690
Query 673 CGGGAAGTCAAGGTGATGTTTACGGACAAGCAGCATCAAATCTAGCCGCTGGAAGTAATT 732
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 TGGGAAGTCAAGGTGATGTTTACGGACAAGCAGCATCAAATCTAGCCGCTGGAAGTAATT 750
Query 733 TAGAGAGTACCATTCAGCAGATTCTTGACATGGGTGGAGGAACCTGGGATCGTGACACTG 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 751 TAGAGAGTACCATTCAGCAGATTCTTGACATGGGTGGAGGAACCTGGGATCGTGAGACTG 810
Query 793 TTGTCCGTGCACTTCGTGCTGCATTTAACAACCCCGAAAGAGCTGTGGAATATCTTTATA 852
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 811 TTGTCCTTGCACTTCGTGCTGCATTTAACAACCCTGAAAGAGCTGTGGAATATCTTTATA 870
Query 853 CTGGGATCCCTGAGCAAGCTGAAGTTCCACCAGTTGCCCGTGCTCCAGCTAGTGTCGGAC 912
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 871 CTGGGATCCCTGAGCAAGCTGAAGTTCCACCAGTTGCCCGTCCTCCAGCTAGTGCCGGAC 930
Query 913 AGCCTGCAAATCCTCCAGCACAGACTCAACAACCTGCAGCAGCACCCGCAAGTGGTCCTA 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 AGCCTGCAAATCCTCCAGCACAGACTCAACAACCTGCAGCAGCACCCGCAAGTGGTCCTA 990
Query 973 ATGCAAATCCGCTAGACCTCTTCCCACAGGGCTTGCCAAATGTTGGAGGAAATCCTGGTG 1032
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 ATGCAAATCCGTTAGATCTCTTCCCACAGGGCTTGCCAAATGTTGGAGGAAATCCTGGTG 1050
Query 1033 CTGGAACACTTGACTTCTTGCGCAACAGCCAACAGTTCCAAGCTCTGCGAGCAATGGTGC 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 CTGGAACACTTGACTTCTTGCGCAACAGCCAACAGTTCCAAGCTCTGCGAGCAATGGTGC 1110
Query 1093 AAGCAAACCCTCAAGTTCTGCAGCCCATGCTTCAGGAACTGGGAAAGCAGAACCCAAACT 1152
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1111 AAGCAAACCCTCAAGTTCTGCAGCCCATGCTTCAGGAACTGGGAAAACAGAACCCAAACT 1170
Query 1153 TGATGCGGTTGATTCAAGACCACCAAGCTGACTTCTTACGCTTAATCAATGAACCCGTTG 1212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1171 TGATGCGGTTGATTCAAGACCACCAAGCTGACTTCTTACGCTTAATCAATGAACCCGTTG 1230
Query 1213 AAGGAGGGGGAGAAAGTGGCAACCTCCTTGGCCAAATGGCGGCGGGAATGCCACAGCCAC 1272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 AAGGAGGGGGAGAAAGTGGCAACCTCCTTGGCCAAATGGCGGCGGGAATGCCACAGCCAC 1290
Query 1273 AGGCGATTCAAGTCACACCTGAGGAACGCGAAGCAATTGAACGGCTTGAAGCGATGGGAT 1332
|||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1291 AGGCGATTCAAGTCACACATGAGGAACGTGAAGCCATTGAACGGCTTGAAGCGATGGGAT 1350
Query 1333 TTGACAGAGCATTGGTGTTGGAAGTGTTCTTTGCGTGCAACAAGAATGAAGAGTTGGCTG 1392
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1351 TTGAGAGAGCATTGGTGTTGGAAGTGTTCTTTGCGTGCAACAAGAATGAAGAGTTGGCTG 1410
Query 1393 CAAACTATCTTCTAGATCACATGCATGAGTTCGAGGAATAACCTTCTTCAGTTTACTTTA 1452
|||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||
Sbjct 1411 CAAACTATCTTCTAGATCACATGCATGAATTCGAGGAATAAGCTTCTTCAGATTACTTTA 1470
Query 1453 CCTACTCTCTATCTTTCCCATTGGTCCATATGTGTTACCTATATATTTGTGGG-TGCCAA 1511
||||||||||||||||| ||||||||||||||| ||| |||||||| |||||| ||||||
Sbjct 1471 CCTACTCTCTATCTTTCGCATTGGTCCATATGTTTTAGCTATATATGTGTGGGATGCCAA 1530
Query 1512 GTCCATGATCTCGTCACTTTGTCCATGTTCATGGCTCAGTTCTCGGTTTAAAATGGAGTT 1571
||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1531 ATCCATGACCTCGTCACTTTGTCCATGTTCATGGCTCAGTTCTCAGTTTAAAATGAAGTT 1590
Query 1572 TATCATCTGCTCTTTCTTTGTATTGTCGTTAGTCCTTACAAAATCTCCCGTTCCAGTTAT 1631
| |||| || |||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1591 TGTCATGTGTTCTTTCTTTGTATTGTCGTTAGTCCTTACAAAATATCTTGTTCCAGTTAT 1650
Query 1632 TTTTGTCAAATTGGGGACA 1650
|||||| |||||||||||
Sbjct 1651 TTTTGTTGAATTGGGGACA 1669
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82529695980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5