BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477490
Length=1346
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02550.1 | Symbols: LBD41 | LOB domain-containing protein 41... 1753 0.0
> AT3G02550.1 | Symbols: LBD41 | LOB domain-containing protein
41 | chr3:536505-537998 REVERSE LENGTH=1382
Length=1382
Score = 1753 bits (949), Expect = 0.0
Identities = 1134/1222 (93%), Gaps = 18/1222 (1%)
Strand=Plus/Plus
Query 1 AAAACAGCGGCGGTTCTGGGaaaaaaaCAGGAAGGATTTCGCAATTAAAAGACAAAACAA 60
|||||||||||||||||||||||| || ||||||||||| | ||||||||||||||||||
Sbjct 1 AAAACAGCGGCGGTTCTGGGAAAATAA-AGGAAGGATTTTGTAATTAAAAGACAAAACAA 59
Query 61 CCCTTGTCTTTAGAGGAAAACAGCTCTTCTCATCTTGTTTTCTTTGTCTTCTGCCTTCTT 120
||||||||||||||| |||||||||||||| |||||||||||||||||||||| | | |
Sbjct 60 CCCTTGTCTTTAGAGAAAAACAGCTCTTCTTATCTTGTTTTCTTTGTCTTCTG-C--C-T 115
Query 121 TCTTCCCTTGGTTTTATAA-C-CTCTCCGATTCCCCC-AAAACCCAGGGGCTTCTTACAC 177
||||||||||||||||||| | ||||||| ||||||| |||| |||||||||||||||||
Sbjct 116 TCTTCCCTTGGTTTTATAATCTCTCTCCGCTTCCCCCAAAAATCCAGGGGCTTCTTACAC 175
Query 178 GCACACAATCCTTTAAAGCTATTGTCTTTCTTATATAAGT-AGTGAATCTTC-TTCTTCA 235
|||||||||||||||||||||| ||||||||||||||| | ||||||||||| || ||
Sbjct 176 GCACACAATCCTTTAAAGCTATCGTCTTTCTTATATAA-TCAGTGAATCTTCATT-AACA 233
Query 236 GCTCCCACAAAATCTCCGAAATAACTTTCAAAACAGGGACAAAAAGTTTCAAATCGCTTG 295
||||||||||||||| ||||||||||||| ||||| | |||| |||| ||||||| |||
Sbjct 234 CCTCCCACAAAATCTCAGAAATAACTTTCACAACAGAGTCAAAGAGTTCCAAATCGTTTG 293
Query 296 TTTGTGTTTTGTACGATC-AAGTTGTTGTTACTTGTAAGAAAATCGAAATCAAAGATGCG 354
||||| |||||||||||| ||||||||| ||||||||||| |||||||| ||||||||||
Sbjct 294 TTTGTATTTTGTACGATCAAAGTTGTTGGTACTTGTAAGATAATCGAAACCAAAGATGCG 353
Query 355 GATGAGCTGTAATGGATGTAGAGTTCTTCGAAAAGGGTGTAGTGAGGATTGTAGCATAAG 414
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 354 GATGAGCTGTAATGGATGCAGAGTTCTTCGGAAAGGGTGTAGTGAGGATTGTAGTATAAG 413
Query 415 ACCGTGTTTGGCTTGGATCAAATCGCCTGAAGCGCAAGCTAATGCAACTGTGTTTCTCGC 474
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 414 GCCGTGTTTGGCTTGGATCAAATCGCCTGAAGCGCAAGCTAACGCAACTGTCTTTCTCGC 473
Query 475 CAAGTTCTATGGCCGTGCTGGACTCATGAATCTCATCAACGCCGGTCCCGATCACCTTCG 534
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 474 CAAGTTCTATGGCCGTGCTGGACTCATGAACCTCATCAACGCCGGTCCCAATCACCTTCG 533
Query 535 TCCTGGAATTTTCCGATCGTTGTTGCACGAAGCTTGTGGGAGGATTGTGAATCCGATCTA 594
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TCCTGGGATTTTCCGATCGTTGTTGCACGAAGCTTGTGGGAGGATTGTGAATCCGATCTA 593
Query 595 TGGCTCGGTTGGTTTGTTGTGGTCGGGGAATTGGCAGCTTTGTCAAGACGCCGTTGAGGC 654
||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 594 TGGTTCGGTGGGTTTGTTGTGGTCGGGGAATTGGCAGCTTTGTCAAGACGCCGTGGAGGC 653
Query 655 TGTGATGAAAGGAGAACCGATCAAAGAGATCGCCACAGACGCTGCGACGATCGGCCAAGG 714
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 654 TGTGATGAAAGGAGAACCGGTCAAAGAGATCGCCACAGACGCTGCGACGATCGGCCAAGG 713
Query 715 TCCGCCGCTTAAGATCTACGATATCCGACATATCTCCAAGGATGATAACTCCGCCGCCGC 774
|||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 714 TCCGCCTCTTAAGATCTACGACATCCGACATATCTCCAAGGATGATAACTCTGCCGCCGC 773
Query 775 TGCGGCTACTGGCTCAACCGATTTGAAACGGGCGAGAACTCGCCGGGCTAAGCGGGTATC 834
| | |||||||||||||||||||||||| |||| ||||||||| ||||||||||| ||
Sbjct 774 -G-G-CTACTGGCTCAACCGATTTGAAACTTGCGAAAACTCGCCGTGCTAAGCGGGTCTC 830
Query 835 TACCGTCGAGAAACAGGCGGAATCGGAGGGAAAGTCCGGCGAAGCTAGTCACGAGTCGTC 894
||||||| || |||||||||||||||||||||||| | ||| ||||||||||| |||||
Sbjct 831 CACCGTCGCGATACAGGCGGAATCGGAGGGAAAGTCTGACGAGGCTAGTCACGATTCGTC 890
Query 895 TTTGAGTCATCAGTCTGAAATAGTAGCTGCTCATGAAGGAGAGAGCAAGGAATCGGAGAG 954
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 891 GTTGAGTCATCAGTCTGAAATAGTGGCTGCTCATGAAGGAGAGAGCAAGGAATCCGAGAG 950
Query 955 CAATGTCTCGGAGGTTTTGGCATTTTCGCCACCGACTGTGCAGGGCTCCGGCGAGATAAA 1014
||||||||| |||||||||||||| ||||| ||| ||||| |||||||||||||||||||
Sbjct 951 CAATGTCTCTGAGGTTTTGGCATTCTCGCCTCCGGCTGTGAAGGGCTCCGGCGAGATAAA 1010
Query 1015 GCTTGACCTAACTTTAGGGCTCGAGCCGGTGTCACGTGCGTATCATGTGGTACCTGTAAA 1074
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1011 GCTTGACCTAACTTTAAGGCTCGAACCGGTGTCACGTGCGTATCATGTGGTACCTGTTAA 1070
Query 1075 GAAGAGAAGAATCGGCGTGTTTGGCACGTGTCAGAAGGAGAGCACGTGTAAGACTGAGCT 1134
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 GAAGAGAAGGATCGGCGTGTTTGGCACGTGTCAGAAGGAGAGCACGTGTAAGACTGAGCT 1130
Query 1135 AATGCTTTGAGCTCCGTTGTAGCT-TGCCTCAGAAGTTTTGCCCCAATCAGCTCTATTCG 1193
||||| | ||||||||| ||||| | | |||||||||||||||| ||||||||||||||
Sbjct 1131 TATGCTCTAAGCTCCGTTTTAGCTATAC-TCAGAAGTTTTGCCCCCATCAGCTCTATTCG 1189
Query 1194 GCTCGGCTATGATGATCGTCAA 1215
|||||||| |||||||| ||||
Sbjct 1190 GCTCGGCTCTGATGATCTTCAA 1211
Score = 158 bits (85), Expect = 2e-37
Identities = 118/133 (89%), Gaps = 6/133 (5%)
Strand=Plus/Plus
Query 1215 ATTTCCCCTTTTAATTTTCACTTTCC-GTTGTGACCAAAGAATAGAGTATATGTACAAAC 1273
|||||||| |||||| |||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1249 ATTTCCCCCTTTAATGTTCACTTTCCATTTGTGACAAAAGAATAGAGTATATGTACAAAA 1308
Query 1274 TTATTTACAGAGATTAATTCAAGAATTGGCCTAGATGTTATTAATTTCTTTTCTTTACGA 1333
|||||||||||||||||||||||||||||| | || | ||||| | | |||| || ||||
Sbjct 1309 TTATTTACAGAGATTAATTCAAGAATTGGC-T-GA-GATATTA-TCTATTTT-TTAACGA 1363
Query 1334 ATAAAAGCAAAAA 1346
|||||||||||||
Sbjct 1364 ATAAAAGCAAAAA 1376
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66264719400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5