BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg477490

Length=1346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G02550.1 | Symbols: LBD41 | LOB domain-containing protein 41...  1753    0.0  


> AT3G02550.1 | Symbols: LBD41 | LOB domain-containing protein 
41 | chr3:536505-537998 REVERSE LENGTH=1382
Length=1382

 Score = 1753 bits (949),  Expect = 0.0
 Identities = 1134/1222 (93%), Gaps = 18/1222 (1%)
 Strand=Plus/Plus

Query  1     AAAACAGCGGCGGTTCTGGGaaaaaaaCAGGAAGGATTTCGCAATTAAAAGACAAAACAA  60
             |||||||||||||||||||||||| || ||||||||||| | ||||||||||||||||||
Sbjct  1     AAAACAGCGGCGGTTCTGGGAAAATAA-AGGAAGGATTTTGTAATTAAAAGACAAAACAA  59

Query  61    CCCTTGTCTTTAGAGGAAAACAGCTCTTCTCATCTTGTTTTCTTTGTCTTCTGCCTTCTT  120
             ||||||||||||||| |||||||||||||| |||||||||||||||||||||| |  | |
Sbjct  60    CCCTTGTCTTTAGAGAAAAACAGCTCTTCTTATCTTGTTTTCTTTGTCTTCTG-C--C-T  115

Query  121   TCTTCCCTTGGTTTTATAA-C-CTCTCCGATTCCCCC-AAAACCCAGGGGCTTCTTACAC  177
             ||||||||||||||||||| | ||||||| ||||||| |||| |||||||||||||||||
Sbjct  116   TCTTCCCTTGGTTTTATAATCTCTCTCCGCTTCCCCCAAAAATCCAGGGGCTTCTTACAC  175

Query  178   GCACACAATCCTTTAAAGCTATTGTCTTTCTTATATAAGT-AGTGAATCTTC-TTCTTCA  235
             |||||||||||||||||||||| ||||||||||||||| | ||||||||||| ||   ||
Sbjct  176   GCACACAATCCTTTAAAGCTATCGTCTTTCTTATATAA-TCAGTGAATCTTCATT-AACA  233

Query  236   GCTCCCACAAAATCTCCGAAATAACTTTCAAAACAGGGACAAAAAGTTTCAAATCGCTTG  295
              ||||||||||||||| ||||||||||||| ||||| | |||| |||| ||||||| |||
Sbjct  234   CCTCCCACAAAATCTCAGAAATAACTTTCACAACAGAGTCAAAGAGTTCCAAATCGTTTG  293

Query  296   TTTGTGTTTTGTACGATC-AAGTTGTTGTTACTTGTAAGAAAATCGAAATCAAAGATGCG  354
             ||||| |||||||||||| ||||||||| ||||||||||| |||||||| ||||||||||
Sbjct  294   TTTGTATTTTGTACGATCAAAGTTGTTGGTACTTGTAAGATAATCGAAACCAAAGATGCG  353

Query  355   GATGAGCTGTAATGGATGTAGAGTTCTTCGAAAAGGGTGTAGTGAGGATTGTAGCATAAG  414
             |||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct  354   GATGAGCTGTAATGGATGCAGAGTTCTTCGGAAAGGGTGTAGTGAGGATTGTAGTATAAG  413

Query  415   ACCGTGTTTGGCTTGGATCAAATCGCCTGAAGCGCAAGCTAATGCAACTGTGTTTCTCGC  474
              ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct  414   GCCGTGTTTGGCTTGGATCAAATCGCCTGAAGCGCAAGCTAACGCAACTGTCTTTCTCGC  473

Query  475   CAAGTTCTATGGCCGTGCTGGACTCATGAATCTCATCAACGCCGGTCCCGATCACCTTCG  534
             |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct  474   CAAGTTCTATGGCCGTGCTGGACTCATGAACCTCATCAACGCCGGTCCCAATCACCTTCG  533

Query  535   TCCTGGAATTTTCCGATCGTTGTTGCACGAAGCTTGTGGGAGGATTGTGAATCCGATCTA  594
             |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  534   TCCTGGGATTTTCCGATCGTTGTTGCACGAAGCTTGTGGGAGGATTGTGAATCCGATCTA  593

Query  595   TGGCTCGGTTGGTTTGTTGTGGTCGGGGAATTGGCAGCTTTGTCAAGACGCCGTTGAGGC  654
             ||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  594   TGGTTCGGTGGGTTTGTTGTGGTCGGGGAATTGGCAGCTTTGTCAAGACGCCGTGGAGGC  653

Query  655   TGTGATGAAAGGAGAACCGATCAAAGAGATCGCCACAGACGCTGCGACGATCGGCCAAGG  714
             ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  654   TGTGATGAAAGGAGAACCGGTCAAAGAGATCGCCACAGACGCTGCGACGATCGGCCAAGG  713

Query  715   TCCGCCGCTTAAGATCTACGATATCCGACATATCTCCAAGGATGATAACTCCGCCGCCGC  774
             |||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct  714   TCCGCCTCTTAAGATCTACGACATCCGACATATCTCCAAGGATGATAACTCTGCCGCCGC  773

Query  775   TGCGGCTACTGGCTCAACCGATTTGAAACGGGCGAGAACTCGCCGGGCTAAGCGGGTATC  834
              | | ||||||||||||||||||||||||  |||| ||||||||| ||||||||||| ||
Sbjct  774   -G-G-CTACTGGCTCAACCGATTTGAAACTTGCGAAAACTCGCCGTGCTAAGCGGGTCTC  830

Query  835   TACCGTCGAGAAACAGGCGGAATCGGAGGGAAAGTCCGGCGAAGCTAGTCACGAGTCGTC  894
              ||||||| || |||||||||||||||||||||||| | ||| ||||||||||| |||||
Sbjct  831   CACCGTCGCGATACAGGCGGAATCGGAGGGAAAGTCTGACGAGGCTAGTCACGATTCGTC  890

Query  895   TTTGAGTCATCAGTCTGAAATAGTAGCTGCTCATGAAGGAGAGAGCAAGGAATCGGAGAG  954
              ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct  891   GTTGAGTCATCAGTCTGAAATAGTGGCTGCTCATGAAGGAGAGAGCAAGGAATCCGAGAG  950

Query  955   CAATGTCTCGGAGGTTTTGGCATTTTCGCCACCGACTGTGCAGGGCTCCGGCGAGATAAA  1014
             ||||||||| |||||||||||||| ||||| ||| ||||| |||||||||||||||||||
Sbjct  951   CAATGTCTCTGAGGTTTTGGCATTCTCGCCTCCGGCTGTGAAGGGCTCCGGCGAGATAAA  1010

Query  1015  GCTTGACCTAACTTTAGGGCTCGAGCCGGTGTCACGTGCGTATCATGTGGTACCTGTAAA  1074
             |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||
Sbjct  1011  GCTTGACCTAACTTTAAGGCTCGAACCGGTGTCACGTGCGTATCATGTGGTACCTGTTAA  1070

Query  1075  GAAGAGAAGAATCGGCGTGTTTGGCACGTGTCAGAAGGAGAGCACGTGTAAGACTGAGCT  1134
             ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1071  GAAGAGAAGGATCGGCGTGTTTGGCACGTGTCAGAAGGAGAGCACGTGTAAGACTGAGCT  1130

Query  1135  AATGCTTTGAGCTCCGTTGTAGCT-TGCCTCAGAAGTTTTGCCCCAATCAGCTCTATTCG  1193
              ||||| | ||||||||| ||||| | | |||||||||||||||| ||||||||||||||
Sbjct  1131  TATGCTCTAAGCTCCGTTTTAGCTATAC-TCAGAAGTTTTGCCCCCATCAGCTCTATTCG  1189

Query  1194  GCTCGGCTATGATGATCGTCAA  1215
             |||||||| |||||||| ||||
Sbjct  1190  GCTCGGCTCTGATGATCTTCAA  1211


 Score =  158 bits (85),  Expect = 2e-37
 Identities = 118/133 (89%), Gaps = 6/133 (5%)
 Strand=Plus/Plus

Query  1215  ATTTCCCCTTTTAATTTTCACTTTCC-GTTGTGACCAAAGAATAGAGTATATGTACAAAC  1273
             |||||||| |||||| ||||||||||  ||||||| ||||||||||||||||||||||| 
Sbjct  1249  ATTTCCCCCTTTAATGTTCACTTTCCATTTGTGACAAAAGAATAGAGTATATGTACAAAA  1308

Query  1274  TTATTTACAGAGATTAATTCAAGAATTGGCCTAGATGTTATTAATTTCTTTTCTTTACGA  1333
             |||||||||||||||||||||||||||||| | || | ||||| | | |||| || ||||
Sbjct  1309  TTATTTACAGAGATTAATTCAAGAATTGGC-T-GA-GATATTA-TCTATTTT-TTAACGA  1363

Query  1334  ATAAAAGCAAAAA  1346
             |||||||||||||
Sbjct  1364  ATAAAAGCAAAAA  1376



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 66264719400


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5