BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477490 Length=1346 Score E Sequences producing significant alignments: (Bits) Value AT3G02550.1 | Symbols: LBD41 | LOB domain-containing protein 41... 1753 0.0 > AT3G02550.1 | Symbols: LBD41 | LOB domain-containing protein 41 | chr3:536505-537998 REVERSE LENGTH=1382 Length=1382 Score = 1753 bits (949), Expect = 0.0 Identities = 1134/1222 (93%), Gaps = 18/1222 (1%) Strand=Plus/Plus Query 1 AAAACAGCGGCGGTTCTGGGaaaaaaaCAGGAAGGATTTCGCAATTAAAAGACAAAACAA 60 |||||||||||||||||||||||| || ||||||||||| | |||||||||||||||||| Sbjct 1 AAAACAGCGGCGGTTCTGGGAAAATAA-AGGAAGGATTTTGTAATTAAAAGACAAAACAA 59 Query 61 CCCTTGTCTTTAGAGGAAAACAGCTCTTCTCATCTTGTTTTCTTTGTCTTCTGCCTTCTT 120 ||||||||||||||| |||||||||||||| |||||||||||||||||||||| | | | Sbjct 60 CCCTTGTCTTTAGAGAAAAACAGCTCTTCTTATCTTGTTTTCTTTGTCTTCTG-C--C-T 115 Query 121 TCTTCCCTTGGTTTTATAA-C-CTCTCCGATTCCCCC-AAAACCCAGGGGCTTCTTACAC 177 ||||||||||||||||||| | ||||||| ||||||| |||| ||||||||||||||||| Sbjct 116 TCTTCCCTTGGTTTTATAATCTCTCTCCGCTTCCCCCAAAAATCCAGGGGCTTCTTACAC 175 Query 178 GCACACAATCCTTTAAAGCTATTGTCTTTCTTATATAAGT-AGTGAATCTTC-TTCTTCA 235 |||||||||||||||||||||| ||||||||||||||| | ||||||||||| || || Sbjct 176 GCACACAATCCTTTAAAGCTATCGTCTTTCTTATATAA-TCAGTGAATCTTCATT-AACA 233 Query 236 GCTCCCACAAAATCTCCGAAATAACTTTCAAAACAGGGACAAAAAGTTTCAAATCGCTTG 295 ||||||||||||||| ||||||||||||| ||||| | |||| |||| ||||||| ||| Sbjct 234 CCTCCCACAAAATCTCAGAAATAACTTTCACAACAGAGTCAAAGAGTTCCAAATCGTTTG 293 Query 296 TTTGTGTTTTGTACGATC-AAGTTGTTGTTACTTGTAAGAAAATCGAAATCAAAGATGCG 354 ||||| |||||||||||| ||||||||| ||||||||||| |||||||| |||||||||| Sbjct 294 TTTGTATTTTGTACGATCAAAGTTGTTGGTACTTGTAAGATAATCGAAACCAAAGATGCG 353 Query 355 GATGAGCTGTAATGGATGTAGAGTTCTTCGAAAAGGGTGTAGTGAGGATTGTAGCATAAG 414 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| Sbjct 354 GATGAGCTGTAATGGATGCAGAGTTCTTCGGAAAGGGTGTAGTGAGGATTGTAGTATAAG 413 Query 415 ACCGTGTTTGGCTTGGATCAAATCGCCTGAAGCGCAAGCTAATGCAACTGTGTTTCTCGC 474 ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 414 GCCGTGTTTGGCTTGGATCAAATCGCCTGAAGCGCAAGCTAACGCAACTGTCTTTCTCGC 473 Query 475 CAAGTTCTATGGCCGTGCTGGACTCATGAATCTCATCAACGCCGGTCCCGATCACCTTCG 534 |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| Sbjct 474 CAAGTTCTATGGCCGTGCTGGACTCATGAACCTCATCAACGCCGGTCCCAATCACCTTCG 533 Query 535 TCCTGGAATTTTCCGATCGTTGTTGCACGAAGCTTGTGGGAGGATTGTGAATCCGATCTA 594 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 534 TCCTGGGATTTTCCGATCGTTGTTGCACGAAGCTTGTGGGAGGATTGTGAATCCGATCTA 593 Query 595 TGGCTCGGTTGGTTTGTTGTGGTCGGGGAATTGGCAGCTTTGTCAAGACGCCGTTGAGGC 654 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 594 TGGTTCGGTGGGTTTGTTGTGGTCGGGGAATTGGCAGCTTTGTCAAGACGCCGTGGAGGC 653 Query 655 TGTGATGAAAGGAGAACCGATCAAAGAGATCGCCACAGACGCTGCGACGATCGGCCAAGG 714 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 654 TGTGATGAAAGGAGAACCGGTCAAAGAGATCGCCACAGACGCTGCGACGATCGGCCAAGG 713 Query 715 TCCGCCGCTTAAGATCTACGATATCCGACATATCTCCAAGGATGATAACTCCGCCGCCGC 774 |||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 714 TCCGCCTCTTAAGATCTACGACATCCGACATATCTCCAAGGATGATAACTCTGCCGCCGC 773 Query 775 TGCGGCTACTGGCTCAACCGATTTGAAACGGGCGAGAACTCGCCGGGCTAAGCGGGTATC 834 | | |||||||||||||||||||||||| |||| ||||||||| ||||||||||| || Sbjct 774 -G-G-CTACTGGCTCAACCGATTTGAAACTTGCGAAAACTCGCCGTGCTAAGCGGGTCTC 830 Query 835 TACCGTCGAGAAACAGGCGGAATCGGAGGGAAAGTCCGGCGAAGCTAGTCACGAGTCGTC 894 ||||||| || |||||||||||||||||||||||| | ||| ||||||||||| ||||| Sbjct 831 CACCGTCGCGATACAGGCGGAATCGGAGGGAAAGTCTGACGAGGCTAGTCACGATTCGTC 890 Query 895 TTTGAGTCATCAGTCTGAAATAGTAGCTGCTCATGAAGGAGAGAGCAAGGAATCGGAGAG 954 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 891 GTTGAGTCATCAGTCTGAAATAGTGGCTGCTCATGAAGGAGAGAGCAAGGAATCCGAGAG 950 Query 955 CAATGTCTCGGAGGTTTTGGCATTTTCGCCACCGACTGTGCAGGGCTCCGGCGAGATAAA 1014 ||||||||| |||||||||||||| ||||| ||| ||||| ||||||||||||||||||| Sbjct 951 CAATGTCTCTGAGGTTTTGGCATTCTCGCCTCCGGCTGTGAAGGGCTCCGGCGAGATAAA 1010 Query 1015 GCTTGACCTAACTTTAGGGCTCGAGCCGGTGTCACGTGCGTATCATGTGGTACCTGTAAA 1074 |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| || Sbjct 1011 GCTTGACCTAACTTTAAGGCTCGAACCGGTGTCACGTGCGTATCATGTGGTACCTGTTAA 1070 Query 1075 GAAGAGAAGAATCGGCGTGTTTGGCACGTGTCAGAAGGAGAGCACGTGTAAGACTGAGCT 1134 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1071 GAAGAGAAGGATCGGCGTGTTTGGCACGTGTCAGAAGGAGAGCACGTGTAAGACTGAGCT 1130 Query 1135 AATGCTTTGAGCTCCGTTGTAGCT-TGCCTCAGAAGTTTTGCCCCAATCAGCTCTATTCG 1193 ||||| | ||||||||| ||||| | | |||||||||||||||| |||||||||||||| Sbjct 1131 TATGCTCTAAGCTCCGTTTTAGCTATAC-TCAGAAGTTTTGCCCCCATCAGCTCTATTCG 1189 Query 1194 GCTCGGCTATGATGATCGTCAA 1215 |||||||| |||||||| |||| Sbjct 1190 GCTCGGCTCTGATGATCTTCAA 1211 Score = 158 bits (85), Expect = 2e-37 Identities = 118/133 (89%), Gaps = 6/133 (5%) Strand=Plus/Plus Query 1215 ATTTCCCCTTTTAATTTTCACTTTCC-GTTGTGACCAAAGAATAGAGTATATGTACAAAC 1273 |||||||| |||||| |||||||||| ||||||| ||||||||||||||||||||||| Sbjct 1249 ATTTCCCCCTTTAATGTTCACTTTCCATTTGTGACAAAAGAATAGAGTATATGTACAAAA 1308 Query 1274 TTATTTACAGAGATTAATTCAAGAATTGGCCTAGATGTTATTAATTTCTTTTCTTTACGA 1333 |||||||||||||||||||||||||||||| | || | ||||| | | |||| || |||| Sbjct 1309 TTATTTACAGAGATTAATTCAAGAATTGGC-T-GA-GATATTA-TCTATTTT-TTAACGA 1363 Query 1334 ATAAAAGCAAAAA 1346 ||||||||||||| Sbjct 1364 ATAAAAGCAAAAA 1376 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66264719400 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5