BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477491
Length=746
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02555.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 959 0.0
AT5G16110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 97.1 2e-19
> AT3G02555.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G16110.1);
Has 130 Blast hits to 130 proteins in 18 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 130; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:539639-541503
REVERSE LENGTH=969
Length=969
Score = 959 bits (519), Expect = 0.0
Identities = 670/739 (91%), Gaps = 26/739 (4%)
Strand=Plus/Plus
Query 1 TCACCCTTATCGCCGCTGTTTCGTCTTGAACAAGCAGATTAGAG-GTTCTTCTGTGGATA 59
||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||
Sbjct 33 TCACCCTTATCGCCGCTGTTTCGTCTTGAACAATCAGATTAG-GTGTTCTTCTGTGGATA 91
Query 60 AAAAATGAATCATTGTAGCCTTCAGCAGAACGCCTTCATGTCTCGTGACGAATCGAGAGG 119
||| |||||||||||||||||||||||||| || ||| |||||||||| |||||||||||
Sbjct 92 AAAGATGAATCATTGTAGCCTTCAGCAGAATGCATTCTTGTCTCGTGAAGAATCGAGAGG 151
Query 120 ATTTGTTCCTATCTATTGTTATCCAATGGACTCTGTTGTTTGTCCTAAGCCTCGTCGTGC 179
||||||||||||||||| | ||||| |||||||||||||||| |||||||| ||||||||
Sbjct 152 ATTTGTTCCTATCTATTCTCATCCAGTGGACTCTGTTGTTTGCCCTAAGCCCCGTCGTGC 211
Query 180 CAACAACGTTATTCGTCCCCTTAGATTACATTTTAGTCAATCAGGAGCTGATGATGTATG 239
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 212 AAACAACGTTATTCGTCCCTTTAGATTACATTTTAGTCTTTCAGGAGCTGATGATGTATG 271
Query 240 TGATTCTAAAGCCGGGGAAGATCTTTTGGACATATTTCGTAGAAAGGAATCAGTATCATC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 TGATTCTAAAGCCGGGGAAGATCTTTTGGACATATTTCGTAGAAAGGAATCAGTATCATC 331
Query 300 TACATCACCCCCATTTTTTCTTGGGTCTCCCCCGAGCCGAGCAGCAAACCCGTTAGCTCA 359
|| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 332 TAGATCACCCCCATTTTTCCTTGGGTCTCCCCCTAGCCGAGCAGCAAACCCGTTAGCTCA 391
Query 360 AGATGCACGCTTTGGAGTTGAGAAACTCAACACTGTCTCACCCTCACTCTCACCTCGTGT 419
||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| | |
Sbjct 392 AGATGCACGCTTTGGAGATGAGAAACTCAACACTGTCTCACCCTCACTCTCCCCTCTTCT 451
Query 420 CAAAGCAGGA----G-G--AGGAG-G-TTGTGGTAGAATGAAGTTTGGGGTGAAACCAGC 470
| | | | | | | | || | |||||||||||||||||||||||||||||||||
Sbjct 452 CCCATCTGCATCTCGTGTTAAAAGTGGTTGTGGTAGAATGAAGTTTGGGGTGAAACCAGC 511
Query 471 AACTGTTAGAGTAGAAGGGTTTGATTGCTTGAACAGGGACCGCCAAAACTCAAGCATTCC 530
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||
Sbjct 512 AACTGTTAGAGTAGAAGGGTTTGATTGCTTGAACAGGGACCGCCCAAACTCAAGTATCCC 571
Query 531 TGCCATGGCCTAGAAAGAAGAAGAAGGAACAAAGAG-ATTCACAAAGTGTACATAAGATC 589
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 572 TGCCATGGCCTAGAAAGAAGAAGAAGGAACAAAGAGGATTCACAAAGTGTACATAAAATC 631
Query 590 CAGAATCAA-GACT--AtttttttGAAGCAAGTATATATATTTTTGCAGAAGAAGAGGGG 646
|||| |||| |||| ||||||| |||| ||||||||||| |||||||||||||||||
Sbjct 632 CAGACTCAAAGACTCCATTTTTT-GAAG-AAGTATATATAGTTTTGCAGAAGAAGAGGAA 689
Query 647 AAGGAAGATCAAAGTTCACTCAAGGCTTTTACCGCAGTTTTCTG--AT---GA-G-G-TT 698
||||||||| || | || |||||| ||||||||||||||||||| || || | | ||
Sbjct 690 AAGGAAGATTAACGATCGCTCAAG-CTTTTACCGCAGTTTTCTGTGATTATGATGAGGTT 748
Query 699 CAGTGGTGTGTATATATAT 717
|| || |||||||||||||
Sbjct 749 CAATGTTGTGTATATATAT 767
> AT5G16110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G02555.1);
Has 133 Blast hits to 133 proteins in 18 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:5260604-5262840
REVERSE LENGTH=1474
Length=1474
Score = 97.1 bits (52), Expect = 2e-19
Identities = 186/244 (76%), Gaps = 35/244 (14%)
Strand=Plus/Plus
Query 59 AAAAA-ATGAATCATTGTAGCCTTCAGCAGAACGCCTTCATGTCTCGTGACGA-ATCGA- 115
||||| ||||||||||| | |||||||||||||||||||||||||||||| || || ||
Sbjct 365 AAAAAGATGAATCATTGCAACCTTCAGCAGAACGCCTTCATGTCTCGTGAGGAGAT-GAT 423
Query 116 GAGGATTTGTTCC-TA----TCTA-TTGTTA-TCC-AATGGACTCTGTTGT-TTG-TCCT 165
| ||||||| || || ||| ||||| ||| || | ||| | || ||| | |
Sbjct 424 G-GGATTTGA-CCGTAAGGATCTTGTTGTTTGTCCTAA-GC-CTC-GACGTGTTGGTT-T 477
Query 166 AAGCCTCGTCGTGCCAACAACGTTATTCGTCCCCTTAGATTACATTTTAGTCAATCAGGA 225
| | ||| | | ||||||||||||||||| |||||||||||| | |||||| | | |
Sbjct 478 A--C-TCG-C---C-AACAACGTTATTCGTCCTCTTAGATTACATATGAGTCAAGCTGCA 529
Query 226 GCTGA-TGATGTATGTGATTCTAAAGCCGGGGAAGATCTTTTGGACAT-ATTTCGTAGAA 283
|| || | ||| ||||||||||||| || | || |||||||| || ||| |||||||
Sbjct 530 GCCGACT--TGT--GTGATTCTAAAGCTGGTGCTGAGCTTTTGGAAATCATT-CGTAGAA 584
Query 284 AGGA 287
||||
Sbjct 585 AGGA 588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36218819987
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5