BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477492
Length=696
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02560.1 | Symbols: | Ribosomal protein S7e family protein ... 1066 0.0
AT5G16130.1 | Symbols: | Ribosomal protein S7e family protein ... 616 1e-175
> AT3G02560.1 | Symbols: | Ribosomal protein S7e family protein
| chr3:541715-543385 FORWARD LENGTH=910
Length=910
Score = 1066 bits (577), Expect = 0.0
Identities = 660/699 (94%), Gaps = 9/699 (1%)
Strand=Plus/Plus
Query 1 CTTGTAAGGTTCTTGGTCGTTCTTTACTGATCTGTCAAGATGTATTCTGGTCAGAACAAG 60
||| |||||||||| ||||||| ||| |||||||| ||||||||||| ||||||||||||
Sbjct 80 CTTCTAAGGTTCTTCGTCGTTC-TTATTGATCTGTGAAGATGTATTCGGGTCAGAACAAG 138
Query 61 ATCCACAAGGATAAGGGTGTGGAACCAACAGAGTTTGAAGAGCAAGTTACTCAGGCTCTT 120
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||
Sbjct 139 ATCCACAAGGATAAGGGTGTTGCACCAACAGAGTTTGAAGAGCAAGTTACTCAGGCT-TT 197
Query 121 -TTTGACTTGGAGAACACCAACCAGGAGTTGAAAAGCGAGTTGAAAGATCTCTACATTAA 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 GTTTGACTTGGAGAACACCAACCAGGAGTTGAAAAGCGAGTTGAAAGATCTCTACATTAA 257
Query 180 CCAAGCAGTTCATATGGATATTTCTAGCAACCGCAAAGCTGTTGTCATCTACGTTCCATT 239
|||||| ||||| |||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 258 CCAAGCTGTTCAGATGGATATTTCTGGCAACCGCAAAGCTGTTGTGATCTACGTTCCATT 317
Query 240 CAGACTGAGGAAAGCTTTCCGCAAGATTCATCTCCGTCTTGTCAGAGAGCTTGAGAAGAA 299
||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 318 CAGGCTGAGGAAAGCTTTCCGCAAGATTCATCTTCGTCTGGTCAGAGAGCTTGAGAAGAA 377
Query 300 GTTCAGTGGAAAAGATGTTATCTTTGTTGCTACCAGAAGAATCATGCGTCCC-CCAAAGA 358
|||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||
Sbjct 378 GTTCAGTGGAAAAGATGTGATCTTTGTTGCTACCAGAAGAATCATGCG-CCCACCAAAGA 436
Query 359 AAGGCTCAGCTGTTCAGAGACCACGCAACAGAACTCTTACTTCTGTCCATGAAGCCATGC 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 AAGGCTCAGCTGTTCAGAGACCACGCAACAGAACTCTTACTTCTGTCCATGAAGCCATGC 496
Query 419 TCGAGGATGTCGCTTACCCTGCTGAGATTGTAGGGAAGCGAACCAGATACCGTCTTGATG 478
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 497 TCGAGGATGTCGCTTACCCTGCTGAGATTGTAGGAAAGAGAACCAGATACCGTCTTGATG 556
Query 479 GCACCAAGATCACGAAGGTCTATTTGGACACTAAGC-AGAAGAACGACACTGAGTACAAG 537
|||||||||||| |||||| | |||||| | ||||| | |||||||||||||||||||||
Sbjct 557 GCACCAAGATCATGAAGGTATTTTTGGATAGTAAGCTA-AAGAACGACACTGAGTACAAG 615
Query 538 CTTGAGACAATGGTGGGTGTGTACAGGAAACTTACAGGGAGGGATGTAGTTTTCGAGTAC 597
|| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 616 CTGGAGACAATGGTGGGTGTGTACAGGAAACTTACAGGGAAAGATGTAGTTTTCGAGTAC 675
Query 598 CCAGTCATAGAAGCTTGAAGAGATGGATGGTTGTTTTATTCTTTTTTGTCGGATAGAGAG 657
||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||
Sbjct 676 CCAGTCATAGAAGCTTGAAGAGATGAATGTTTGTTTCATTCTTTTTTGTCGGATAGAGAG 735
Query 658 AGCTTTTGATTCTGTTTGGGAGTATAACTCTTTGAAAAG 696
|||||||||||||||||||||| ||||||||| ||||
Sbjct 736 --CTTTTGATTCTGTTTGGGAGTAAAACTCTTTGCAAAG 772
> AT5G16130.1 | Symbols: | Ribosomal protein S7e family protein
| chr5:5268421-5270156 FORWARD LENGTH=946
Length=946
Score = 616 bits (333), Expect = 1e-175
Identities = 520/609 (85%), Gaps = 17/609 (3%)
Strand=Plus/Plus
Query 25 TACTGATCTGTCAAGATGTAT-TCTGGTCAGAACAAGATCCACAAGGATAAGGGTG-TGG 82
||| ||||||| ||||||| | || | ||||||||||||| | ||||| ||| || | |
Sbjct 116 TAC-GATCTGTGAAGATGT-TCTCCGCTCAGAACAAGATCAAGAAGGACAAGAATGCT-G 172
Query 83 AACCAACAGAGTTTGAAGAGCAAGTTACTCAGGCTCTT-TTTGACTTGGAGAACACCAAC 141
| |||||||| | || ||||||||| |||||||| || ||||| ||||||||||| |||
Sbjct 173 AGCCAACAGAATGCGAGGAGCAAGTTGCTCAGGCT-TTGTTTGATTTGGAGAACACTAAC 231
Query 142 CAGGAGTTGAAAAGCGAGTTGAAAGATCTCTACATTAACCAAGCAGTTCATATGGATATT 201
||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 232 CAGGAGTTGAAAAGCGAGTTGAAAGATCTCTACATCAACCAAGCTGTTCACATGGATATC 291
Query 202 TCTAGCAACCGCAAAGCTGTTGTCATCTACGTTCCATTCAGACTGAGGAAAGCTTTCCGC 261
||| | ||||||||||||||||| || ||||||||||||||| |||||||||||||||||
Sbjct 292 TCTGGAAACCGCAAAGCTGTTGTGATTTACGTTCCATTCAGATTGAGGAAAGCTTTCCGC 351
Query 262 AAGATTCATCTCCGTCTTGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAAGATGTTATC 321
|||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 352 AAGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGGATGTTATC 411
Query 322 TTTGTTGCTACCAGAAGAATCATGCGTCCCCCAAAGAAAGGCT-CAGCTGTTCAGAGACC 380
|||||| | || ||||| |||||||||||||| ||||| || | | ||||||||||| ||
Sbjct 412 TTTGTTACCACAAGAAGGATCATGCGTCCCCCCAAGAAGGG-TGCTGCTGTTCAGAGGCC 470
Query 381 ACGCAACAGAACTCTTACTTCTGTCCATGAAGCCATGCTCGAGGATGTCGCTTACCCTGC 440
||| |||||||||||||| || || |||||||| ||||| || ||||| |||| ||| ||
Sbjct 471 ACGTAACAGAACTCTTACCTCAGTTCATGAAGCTATGCTTGAAGATGTTGCTTTCCCCGC 530
Query 441 TGAGATTGTAGGGAAGCGAAC-CAGATACCGTCTTGATGGCACCAAGATCACGAAGGTCT 499
||||||||| || ||||| || | | |||||||||||||| ||||||||| ||||||||
Sbjct 531 TGAGATTGTTGGAAAGCGTACTC-GCTACCGTCTTGATGGTTCCAAGATCATGAAGGTCT 589
Query 500 ATTTGGACACTAAGCAGAAGAACGACACTGAGTACAAGCTTGAGACAATGGTGGGTGTGT 559
|||||| | ||| | |||||| |||| ||||||||||| ||||| ||||| |||||||
Sbjct 590 TTTTGGATGCCAAGGAAAAGAACAACACAGAGTACAAGCTCGAGACTATGGTCGGTGTGT 649
Query 560 ACAGGAAACTTACAGGGAGGGATGTAGTTTTCGAGTACCCAGTCATAGAAGCTTGAA-GA 618
|| | |||||||| || | ||||| ||||| |||||||||||| |||||||||| ||
Sbjct 650 ACCGTAAACTTACTGGCAAAGATGTTGTTTTTGAGTACCCAGTC---GAAGCTTGAAAGA 706
Query 619 -GATGGATG 626
|||| |||
Sbjct 707 AGATG-ATG 714
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33707112637
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5