BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477494
Length=1491
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02570.1 | Symbols: MEE31, PMI1 | Mannose-6-phosphate isomer... 2283 0.0
> AT3G02570.1 | Symbols: MEE31, PMI1 | Mannose-6-phosphate isomerase,
type I | chr3:543346-545595 REVERSE LENGTH=1533
Length=1533
Score = 2283 bits (1236), Expect = 0.0
Identities = 1399/1475 (95%), Gaps = 22/1475 (1%)
Strand=Plus/Plus
Query 1 GTAAAGAGAAAAGCTTTGAGTCTTCCAATTGACATGGGCGCTTAGCTTATTCTACTTGAG 60
|||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||
Sbjct 1 GTAAAGAGAAAAGCTTTGAGTCTTCC-ATTGACATGGGCGCTTAGCTTA---TGCTTGAG 56
Query 61 ATA--TT-TATTTCCCTCCGAGACACGGATTTAGATTCGTAATCGTGAG--TTTTGGTGT 115
||| || | ||| ||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 57 ATATTTTGTTTTTACCTCCGAGAAACGGATTTAGATTCGTAATCGTGAGTTTTTTGGTGT 116
Query 116 AATGGAGATCGCTACTGTCGTTAAGGCTAATGGCGGTTGTGAAGCGGATCGACGACGGCT 175
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 117 AATGGAGATCGCTACTGTCGTAAAGGCTAATGGCGGTTGTGAAGCGGATCGACGACGGCT 176
Query 176 TCGCCGATTGAGATGCTCCGTTAAGGATTACGATTGGGGCAAAATTGGATCGGATTCACT 235
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 177 TCGCCGATTGAGATGCTCTGTTAAGGATTACGATTGGGGCAAAATTGGATCGGATTCACT 236
Query 236 CGTTTACAGGGTTTATGCGGCTAACTCTGATGACCAGATCGATCCTACACGACCTTACGC 295
||||||||||||||||||||| || || ||| || |||||||||||||||||||||||||
Sbjct 237 CGTTTACAGGGTTTATGCGGCGAATTCAGATTACGAGATCGATCCTACACGACCTTACGC 296
Query 296 CGAGCTTTGGATGGGGACTCACGAGTCCGGTCCGAGTTACTTGGAGGATGCTGATGGATC 355
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 297 CGAGCTATGGATGGGGACTCACGAGTCTGGTCCGAGTTACTTGGAGGATGCTGATGGATC 356
Query 356 CAACGGCGTTACCCTTAGATCGTGGATCACCGAAAACCCTAAATCTCTTGGAGATAGGGT 415
||| ||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 357 CAATGGCGTGACCCTTAGATCCTGGATCACCGAAAACCCTAAATCTCTTGGAAATAGGGT 416
Query 416 TTTGGAGAAATGGGGTTGCGATCTCCCATTTCTGTTCAAGGTGTTGTCGGTGGCAAGGCC 475
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 417 TTTGGAGAAATGGGGTTGCGATCTCCCCTTTCTGTTCAAGGTGTTGTCGGTGGCAAGGCC 476
Query 476 CTTGTCGATTCAAGCACATCCGGACAAGAAATTAGCAAAGAAAATGCACAAAGCTCATCC 535
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 477 GTTGTCGATTCAAGCACATCCAGATAAGAAATTAGCAAAGAAAATGCACAAAGCTCATCC 536
Query 536 TAATCTTTATAAAGATGACAATCACAAACCAGAGATGGCTTTGGCCTATACTCAATTCGA 595
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TAATCTTTATAAAGACGACAATCACAAACCAGAGATGGCTTTGGCCTATACTCAATTCGA 596
Query 596 GGCTCTGTGTGGCTTTATACCTCTTCAGGAGCTTAAGAGTGTCATTCAAGCTATTCCGGA 655
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 597 GGCTCTCTGTGGCTTTATACCTCTTCAGGAGCTTAAGAGTGTCATTCGAGCTATTCCGGA 656
Query 656 GATTGAGGAACTTGTTGGGAGTGAAGAAGTAAACCAAGTTTTCTGCATCAGTGAACATGA 715
|||||| |||||||||||||||||||||| ||||||||||||||| |||| |||||||||
Sbjct 657 GATTGAAGAACTTGTTGGGAGTGAAGAAGCAAACCAAGTTTTCTGTATCACTGAACATGA 716
Query 716 TGAGGAAAAAGTGAAATCTGTTGTCCGAACAATCTTCACCCTGCTAATGTCTGCAGATC- 774
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 717 TGAGGAAAAAGTGAAATCTGTTGTCCGAACAATCTTCACCCTGCTAATGTCTGCTGA-CG 775
Query 775 CAGATACAACAAAGAAAATCGTATCCAAACTAAAACGCCGTCTGCATATGGAGAGTCAGG 834
| ||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||
Sbjct 776 CCGATACAACAAAGAAAATTGTATCCAAATTAAAACGCCGACTGCATATGGAGAGTCAGG 835
Query 835 AACGCCAACTGACAGACAAGGAACGGCTGGTTTTGAAGCTAGAGAAGCAATATCCAAATG 894
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 AACGCCAATTGACAGACAAGGAACGGCTGGTTTTGAAGCTAGAGAAGCAATATCCAAATG 895
Query 895 ATATTGGAGTCATATCTGCTTTCTTCTTCAACTATGTGAAGCTCAATCCTGGCGAAGCCT 954
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 896 ATATTGGAGTGATATCTGCATTCTTCTTCAACTATGTGAAGCTCAATCCTGGCGAAGCCT 955
Query 955 TGTACCTCGGTGCAAACGAGCCCCACGCATACTTATTCGGTGAGTGCCTTGAGGTCATGG 1014
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 TGTATCTTGGTGCAAACGAGCCCCACGCATACTTATTCGGTGAGTGCCTTGAGGTCATGG 1015
Query 1015 CGACTTCAGACAATGTAGTACGAGCCGGCCTCACTTCCAAGCCGT-TGGATATTCAAACA 1073
||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||
Sbjct 1016 CGACTTCAGACAATGTAGTACGAGCTGGCCTCACTTCCAAGCC-TCTGGATATTCAAACA 1074
Query 1074 CTTTGTTCCATGCTCTCATATACACTGGGATATCCGGAAATCCTAAAGGGATCAAGGATT 1133
|||||||| |||||||| |||| ||||||||||||||||||||| |||||| ||||||||
Sbjct 1075 CTTTGTTCAATGCTCTCTTATAAACTGGGATATCCGGAAATCCTGAAGGGAACAAGGATT 1134
Query 1134 CGACCATACATCACAAGATACCTCCCGCCTTTCGAAGAGTTTGAAGTTGATCTGTGTGAT 1193
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1135 CGACCATACATAACAAGATACCTGCCGCCTTTCGAAGAGTTTGAAGTTGATCTGTGTGAT 1194
Query 1194 CTTCCCAGTGGTGCCTCGACAGTGTTTCCATCTGTTCCAGGCCCTTCTCTTCTGCTTGTA 1253
||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1195 CTTCCCAGTGGAGCCTCGACGGTGTTTCCCTCTGTTCCAGGCCCTTCTCTTCTGCTTGTA 1254
Query 1254 CTCCAAGGTGAAGGAAGAATGTCTACAGAAGCATCAGCAGATGGGATTTCAATGGGAGAT 1313
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1255 CTCCAAGGTGAAGGAAGAATGTCTACAGAAGCATCAGCCGATGGGATTTCAATGGGAGAT 1314
Query 1314 GTTTTATTTGTGCCTGCAGATACCGAGATTCACTTGAGGTCATCATCTGACTTGAAGTTG 1373
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1315 GTTTTATTTGTTCCTGCAGATACCGAGATTCACTTGAGGTCTTCATCTGACTTGAAGTTG 1374
Query 1374 TACAGAGCAGGAATCAACAGTAGGTTTTTGTATCCTCTATAGTCAAA-CTACACACAGTA 1432
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||
Sbjct 1375 TACAGAGCAGGAATCAACAGTAGGTTTTTGTTTCCTCTATAGTCAAAACTACACA--GTA 1432
Query 1433 CACAACACATGTTTGTTTTTCTTTCAGTTATTGTA 1467
||||| | |||||| |||| | |||||||||||
Sbjct 1433 CACAA-A--TGTTTGCTTTT-T--CAGTTATTGTA 1461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73543798425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5