BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477496 Length=855 Score E Sequences producing significant alignments: (Bits) Value AT3G02590.1 | Symbols: | Fatty acid hydroxylase superfamily pr... 1227 0.0 AT3G02580.1 | Symbols: STE1, DWF7, BUL1 | sterol 1 | chr3:54690... 741 0.0 > AT3G02590.1 | Symbols: | Fatty acid hydroxylase superfamily protein | chr3:549340-550553 FORWARD LENGTH=840 Length=840 Score = 1227 bits (664), Expect = 0.0 Identities = 799/860 (93%), Gaps = 25/860 (3%) Strand=Plus/Plus Query 1 ATGGCGGCGACTAGT-GCAGATTAT-A--ATCAGTTCGTCAGTGAGACCTCTTTTTACAA 56 ||||||||||||| | ||||||||| | ||||| |||||| |||||||||||||||||| Sbjct 1 ATGGCGGCGACTA-TGGCAGATTATAATGATCAGATCGTCAATGAGACCTCTTTTTACAA 59 Query 57 CCGAATGGTTCTGAGTCACCTTTTGCCGGCGAATCTATGGGAACCTTTACCACATTTCCT 116 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 60 CCGAATGGTTCTGAGTCACCTTTTGCCGGTGAATCTATGGGAACCTTTACCACATTTCCT 119 Query 117 TCAGACATGGCTCCGGAACTACCTCGCCGGAAACATACTCTACTTCATCTCCGGCTTTCT 176 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 120 CCAGACATGGCTCCGGAACTACCTCGCCGGAAACATACTCTACTTCATCTCCGGCTTCCT 179 Query 177 TTGGTGCTTCTACATCTATTACCTTAAACTCAACGTTTACGTCCCAAAAGATTCCATTCC 236 |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 180 CTGGTGCTTCTACATCTATTACCTTAAACTCAACGTTTACGTCCCCAAAGAATCCATTCC 239 Query 237 TACAAGAAAGGCTATGCTTTTGCAAATATACATGGCAATGAAGGCTATGCCTTGGTACAC 296 ||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 240 TACGAGAAAGGCAATGCTTTTGCAAATATACGTGGCAATGAAGGCTATGCCTTGGTACAC 299 Query 297 TCTTCTTCCAGCTGTCTCTGAGTACATGATCGAGCATGGTTGGACCAAATGTTACTCTAC 356 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 300 TCTTCTTCCAGCTGTCTCTGAGTATATGATCGAGCATGGTTGGACCAAATGTTACTCTAC 359 Query 357 ACTTGACCATTTCAACTGGTTCGTCTGTTTGCTCTACATAGCTCTCTATCTTGTTTTGGT 416 |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| || Sbjct 360 ACTTGACCATTTCAACTGGTTCCTCTGTTTCCTCTACATAGCTCTCTATCTTGTTTTAGT 419 Query 417 TGAGTTTATGATTTATTGGGTTCACAAAGAGCTTCATGACTTTAATTTTCTCTATAAGCA 476 |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 420 TGAGTTTATGATTTATTGGGTTCACAAAGAGCTTCATGACATTAAATTTCTCTATAAGCA 479 Query 477 TCTCCATGCGACCCACCATATGTACAACAAACAAAACACACTCTCCCCATTTGCCGGGCT 536 ||||||||| ||||| |||||||||||||| |||||||||||||| |||||||||||||| Sbjct 480 TCTCCATGCTACCCATCATATGTACAACAAGCAAAACACACTCTCTCCATTTGCCGGGCT 539 Query 537 CGCATTTCACCCGTTGGACGGGATACTTCAGGCTGTACCGCACGTGATAGCGCCAGTGCC 596 |||||| || ||| |||||||||||||||||||| |||||||||||||||||| || Sbjct 540 CGCATTCCATCCGCTGGACGGGATACTTCAGGCTATACCGCACGTGATAGCGC---TG-- 594 Query 597 GATGATATCGCTGTTTATAGTGCCGATTCATCAT-ATAACACATTTGAGTCTTTTGTTTT 655 | | | |||||||||||||||| | ||||||||| ||||||||||||||| Sbjct 595 --T--T-T--------ATAGTGCCGATTCATC-TCATAACACATCTGAGTCTTTTGTTTT 640 Query 656 TTGAAGGGATATGGACAGCAAGCATCCATGATTGCATCCATGGTAACATTTGGCCTATAA 715 | ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 641 TGGAAGGGATATGGACAGCAAGCATCCATGATTGCATACATGGTAACATCTGGCCTATAA 700 Query 716 TGGGAGCAGGATACCATACCATACACCATACGACATACAAGCATAACTATGGTCATTATA 775 |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 701 TGGGTGCAGGATACCATACCATACACCATACAACATACAAGCATAACTATGGTCATTATA 760 Query 776 CCATATGGATGGATTGGATGTTTGGCTCCCTTAGGGTTCCTTTAGCAGAAGAAGACAGTT 835 ||||||||||||| |||||||||||||| |||| |||||||||||||||| ||||||||| Sbjct 761 CCATATGGATGGACTGGATGTTTGGCTCTCTTATGGTTCCTTTAGCAGAAAAAGACAGTT 820 Query 836 TCAAGGAGAAAGCAAAGTGA 855 |||||||||||| ||||||| Sbjct 821 TCAAGGAGAAAGAAAAGTGA 840 > AT3G02580.1 | Symbols: STE1, DWF7, BUL1 | sterol 1 | chr3:546903-548795 FORWARD LENGTH=1171 Length=1171 Score = 741 bits (401), Expect = 0.0 Identities = 680/807 (84%), Gaps = 49/807 (6%) Strand=Plus/Plus Query 43 ACCTCTTTTTACAACCGAATGGTTCTGAGTCACCTTTTGCCGGCGAATCTATGGGAACCT 102 |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 188 ACCTCTTTTTACAACCGAATCGTTCTGAGTCATCTTTTGCCGGCGAATCTATGGGAACCC 247 Query 103 TTACCACATTTCCTTCAGACATGGCTCCGGAACTACCTCGCCGGAAACATACTCTACTTC 162 ||||| ||||| || |||||||||||||| || ||||||||||||| | |||| |||||| Sbjct 248 TTACCTCATTTTCTCCAGACATGGCTCCGAAATTACCTCGCCGGAACCCTACTATACTTC 307 Query 163 ATCTCCGGCTTT-CTTTGGTGCTTCTACATCTATTACCTTAAACTCAACGTTTA-CGTCC 220 |||||||| ||| || ||||||||||||||||||||||||||| |||||||||| | ||| Sbjct 308 ATCTCCGG-TTTCCTCTGGTGCTTCTACATCTATTACCTTAAAATCAACGTTTACCTTCC 366 Query 221 CAAAAGATTCCATTCCTACAAGAAAGGCTATGCTTTTGCAAATATACATGGCAATGAAGG 280 | |||||| | |||||||||| ||||||||||| ||||||||| | |||||||||||| Sbjct 367 C-AAAGATGCAATTCCTACAATAAAGGCTATGCGTTTGCAAATGTTTGTGGCAATGAAGG 425 Query 281 CTATGCCTTGGTACACTCTTCTTCCAGCTGTCTCTGAGTA-CATGATCGAGCATGGTTGG 339 ||||||| |||||||||||||||||| ||||||| ||| | ||||| || | ||||||| Sbjct 426 CTATGCCATGGTACACTCTTCTTCCAACTGTCTCCGAG-AGTATGATTGAACGTGGTTGG 484 Query 340 ACCAAATGTTACT-CTA-CACTTGACCATTTCAACTGG-TTC-GTCTGTTTGCTCTACAT 395 |||||||||| | ||| || | | | | ||| |||| ||| || | |||| | ||||| Sbjct 485 ACCAAATGTT-TTGCTAGCA-TAGGCGAATTCGGCTGGATTCTGTAT-TTTG-TTTACAT 540 Query 396 AGCTC-TCTATCTTGTTTTGGTTGAGTTTATG-ATTTATTGGGTTCACAAAGAGCTTCAT 453 || | ||||||||||||| ||||||||| | ||||||||| | |||| |||||||||| Sbjct 541 CGC-CATCTATCTTGTTTTCGTTGAGTTT-GGTATTTATTGGATGCACAGAGAGCTTCAT 598 Query 454 GACTTTAATTTTCTCTATAAGCATCTCCATGCGACCCACCATATGTACAACAAACAAAAC 513 ||| |||| |||||||||| |||||||||| ||||| ||||| |||||||| || || Sbjct 599 GACATTAAGCCTCTCTATAAGTATCTCCATGCCACCCATCATATCTACAACAAGCAGAAT 658 Query 514 ACACTCTCCCCATTTGCCGGGCTCGCATTTCACCC-GTTGGACGGGATACTTCAGGCTGT 572 |||||||| |||||||||||||| ||||||||||| | | |||||||||||||||||||| Sbjct 659 ACACTCTCTCCATTTGCCGGGCTTGCATTTCACCCAG-TAGACGGGATACTTCAGGCTGT 717 Query 573 ACCGCACGTGATAGCGCCAGTGCCGATGATATCGCTGTTTATAGTGCCGATTCATCAT-A 631 |||||| || | | | | | | |||||||||||||||| |||||| | | Sbjct 718 ACCGCA--TG-T---G--A-T----A-G----CGCTGTTTATAGTGCCAATTCAT-TTCA 758 Query 632 TAACACAT-TTGAGTCTTTTGTTTTTTGAAGGGATATGGACAGC-AAGCATCCATGATTG 689 ||| ||| | | |||||||||| | |||| ||||||||| || || ||||||||| || Sbjct 759 CAACTCATATAG-GTCTTTTGTTCATGGAAGCGATATGGACGGCGAA-CATCCATGACTG 816 Query 690 CATCCATGGTAACATTTGGCCTA-TAATGGGAGCAGGATACCATACCATACACCATACGA 748 ||||||||| ||||| ||||| | ||||||| |||||||||||||| |||||||| |||| Sbjct 817 CATCCATGGCAACATCTGGCC-AGTAATGGGTGCAGGATACCATACGATACACCACACGA 875 Query 749 CATACAAGCATAACTATGGTCATTATACCATATGGATGGATTGGATGTTTGGCTCCCTTA 808 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 876 CATACAAGCATAACTATGGTCATTATACCATATGGATGGATTGGATGTTTGGCTCTCTTA 935 Query 809 GGGTTCCT-T-T-AGCAGAAGAAGACA 832 ||| |||| | | || |||||| |||| Sbjct 936 GGGATCCTCTCTTAGAAGAAGATGACA 962 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41694342010 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5