BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477496
Length=855
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02590.1 | Symbols: | Fatty acid hydroxylase superfamily pr... 1227 0.0
AT3G02580.1 | Symbols: STE1, DWF7, BUL1 | sterol 1 | chr3:54690... 741 0.0
> AT3G02590.1 | Symbols: | Fatty acid hydroxylase superfamily
protein | chr3:549340-550553 FORWARD LENGTH=840
Length=840
Score = 1227 bits (664), Expect = 0.0
Identities = 799/860 (93%), Gaps = 25/860 (3%)
Strand=Plus/Plus
Query 1 ATGGCGGCGACTAGT-GCAGATTAT-A--ATCAGTTCGTCAGTGAGACCTCTTTTTACAA 56
||||||||||||| | ||||||||| | ||||| |||||| ||||||||||||||||||
Sbjct 1 ATGGCGGCGACTA-TGGCAGATTATAATGATCAGATCGTCAATGAGACCTCTTTTTACAA 59
Query 57 CCGAATGGTTCTGAGTCACCTTTTGCCGGCGAATCTATGGGAACCTTTACCACATTTCCT 116
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 60 CCGAATGGTTCTGAGTCACCTTTTGCCGGTGAATCTATGGGAACCTTTACCACATTTCCT 119
Query 117 TCAGACATGGCTCCGGAACTACCTCGCCGGAAACATACTCTACTTCATCTCCGGCTTTCT 176
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 120 CCAGACATGGCTCCGGAACTACCTCGCCGGAAACATACTCTACTTCATCTCCGGCTTCCT 179
Query 177 TTGGTGCTTCTACATCTATTACCTTAAACTCAACGTTTACGTCCCAAAAGATTCCATTCC 236
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 180 CTGGTGCTTCTACATCTATTACCTTAAACTCAACGTTTACGTCCCCAAAGAATCCATTCC 239
Query 237 TACAAGAAAGGCTATGCTTTTGCAAATATACATGGCAATGAAGGCTATGCCTTGGTACAC 296
||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 240 TACGAGAAAGGCAATGCTTTTGCAAATATACGTGGCAATGAAGGCTATGCCTTGGTACAC 299
Query 297 TCTTCTTCCAGCTGTCTCTGAGTACATGATCGAGCATGGTTGGACCAAATGTTACTCTAC 356
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 300 TCTTCTTCCAGCTGTCTCTGAGTATATGATCGAGCATGGTTGGACCAAATGTTACTCTAC 359
Query 357 ACTTGACCATTTCAACTGGTTCGTCTGTTTGCTCTACATAGCTCTCTATCTTGTTTTGGT 416
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||
Sbjct 360 ACTTGACCATTTCAACTGGTTCCTCTGTTTCCTCTACATAGCTCTCTATCTTGTTTTAGT 419
Query 417 TGAGTTTATGATTTATTGGGTTCACAAAGAGCTTCATGACTTTAATTTTCTCTATAAGCA 476
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 420 TGAGTTTATGATTTATTGGGTTCACAAAGAGCTTCATGACATTAAATTTCTCTATAAGCA 479
Query 477 TCTCCATGCGACCCACCATATGTACAACAAACAAAACACACTCTCCCCATTTGCCGGGCT 536
||||||||| ||||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 480 TCTCCATGCTACCCATCATATGTACAACAAGCAAAACACACTCTCTCCATTTGCCGGGCT 539
Query 537 CGCATTTCACCCGTTGGACGGGATACTTCAGGCTGTACCGCACGTGATAGCGCCAGTGCC 596
|||||| || ||| |||||||||||||||||||| |||||||||||||||||| ||
Sbjct 540 CGCATTCCATCCGCTGGACGGGATACTTCAGGCTATACCGCACGTGATAGCGC---TG-- 594
Query 597 GATGATATCGCTGTTTATAGTGCCGATTCATCAT-ATAACACATTTGAGTCTTTTGTTTT 655
| | | |||||||||||||||| | ||||||||| |||||||||||||||
Sbjct 595 --T--T-T--------ATAGTGCCGATTCATC-TCATAACACATCTGAGTCTTTTGTTTT 640
Query 656 TTGAAGGGATATGGACAGCAAGCATCCATGATTGCATCCATGGTAACATTTGGCCTATAA 715
| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 641 TGGAAGGGATATGGACAGCAAGCATCCATGATTGCATACATGGTAACATCTGGCCTATAA 700
Query 716 TGGGAGCAGGATACCATACCATACACCATACGACATACAAGCATAACTATGGTCATTATA 775
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 701 TGGGTGCAGGATACCATACCATACACCATACAACATACAAGCATAACTATGGTCATTATA 760
Query 776 CCATATGGATGGATTGGATGTTTGGCTCCCTTAGGGTTCCTTTAGCAGAAGAAGACAGTT 835
||||||||||||| |||||||||||||| |||| |||||||||||||||| |||||||||
Sbjct 761 CCATATGGATGGACTGGATGTTTGGCTCTCTTATGGTTCCTTTAGCAGAAAAAGACAGTT 820
Query 836 TCAAGGAGAAAGCAAAGTGA 855
|||||||||||| |||||||
Sbjct 821 TCAAGGAGAAAGAAAAGTGA 840
> AT3G02580.1 | Symbols: STE1, DWF7, BUL1 | sterol 1 | chr3:546903-548795
FORWARD LENGTH=1171
Length=1171
Score = 741 bits (401), Expect = 0.0
Identities = 680/807 (84%), Gaps = 49/807 (6%)
Strand=Plus/Plus
Query 43 ACCTCTTTTTACAACCGAATGGTTCTGAGTCACCTTTTGCCGGCGAATCTATGGGAACCT 102
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 188 ACCTCTTTTTACAACCGAATCGTTCTGAGTCATCTTTTGCCGGCGAATCTATGGGAACCC 247
Query 103 TTACCACATTTCCTTCAGACATGGCTCCGGAACTACCTCGCCGGAAACATACTCTACTTC 162
||||| ||||| || |||||||||||||| || ||||||||||||| | |||| ||||||
Sbjct 248 TTACCTCATTTTCTCCAGACATGGCTCCGAAATTACCTCGCCGGAACCCTACTATACTTC 307
Query 163 ATCTCCGGCTTT-CTTTGGTGCTTCTACATCTATTACCTTAAACTCAACGTTTA-CGTCC 220
|||||||| ||| || ||||||||||||||||||||||||||| |||||||||| | |||
Sbjct 308 ATCTCCGG-TTTCCTCTGGTGCTTCTACATCTATTACCTTAAAATCAACGTTTACCTTCC 366
Query 221 CAAAAGATTCCATTCCTACAAGAAAGGCTATGCTTTTGCAAATATACATGGCAATGAAGG 280
| |||||| | |||||||||| ||||||||||| ||||||||| | ||||||||||||
Sbjct 367 C-AAAGATGCAATTCCTACAATAAAGGCTATGCGTTTGCAAATGTTTGTGGCAATGAAGG 425
Query 281 CTATGCCTTGGTACACTCTTCTTCCAGCTGTCTCTGAGTA-CATGATCGAGCATGGTTGG 339
||||||| |||||||||||||||||| ||||||| ||| | ||||| || | |||||||
Sbjct 426 CTATGCCATGGTACACTCTTCTTCCAACTGTCTCCGAG-AGTATGATTGAACGTGGTTGG 484
Query 340 ACCAAATGTTACT-CTA-CACTTGACCATTTCAACTGG-TTC-GTCTGTTTGCTCTACAT 395
|||||||||| | ||| || | | | | ||| |||| ||| || | |||| | |||||
Sbjct 485 ACCAAATGTT-TTGCTAGCA-TAGGCGAATTCGGCTGGATTCTGTAT-TTTG-TTTACAT 540
Query 396 AGCTC-TCTATCTTGTTTTGGTTGAGTTTATG-ATTTATTGGGTTCACAAAGAGCTTCAT 453
|| | ||||||||||||| ||||||||| | ||||||||| | |||| ||||||||||
Sbjct 541 CGC-CATCTATCTTGTTTTCGTTGAGTTT-GGTATTTATTGGATGCACAGAGAGCTTCAT 598
Query 454 GACTTTAATTTTCTCTATAAGCATCTCCATGCGACCCACCATATGTACAACAAACAAAAC 513
||| |||| |||||||||| |||||||||| ||||| ||||| |||||||| || ||
Sbjct 599 GACATTAAGCCTCTCTATAAGTATCTCCATGCCACCCATCATATCTACAACAAGCAGAAT 658
Query 514 ACACTCTCCCCATTTGCCGGGCTCGCATTTCACCC-GTTGGACGGGATACTTCAGGCTGT 572
|||||||| |||||||||||||| ||||||||||| | | ||||||||||||||||||||
Sbjct 659 ACACTCTCTCCATTTGCCGGGCTTGCATTTCACCCAG-TAGACGGGATACTTCAGGCTGT 717
Query 573 ACCGCACGTGATAGCGCCAGTGCCGATGATATCGCTGTTTATAGTGCCGATTCATCAT-A 631
|||||| || | | | | | | |||||||||||||||| |||||| | |
Sbjct 718 ACCGCA--TG-T---G--A-T----A-G----CGCTGTTTATAGTGCCAATTCAT-TTCA 758
Query 632 TAACACAT-TTGAGTCTTTTGTTTTTTGAAGGGATATGGACAGC-AAGCATCCATGATTG 689
||| ||| | | |||||||||| | |||| ||||||||| || || ||||||||| ||
Sbjct 759 CAACTCATATAG-GTCTTTTGTTCATGGAAGCGATATGGACGGCGAA-CATCCATGACTG 816
Query 690 CATCCATGGTAACATTTGGCCTA-TAATGGGAGCAGGATACCATACCATACACCATACGA 748
||||||||| ||||| ||||| | ||||||| |||||||||||||| |||||||| ||||
Sbjct 817 CATCCATGGCAACATCTGGCC-AGTAATGGGTGCAGGATACCATACGATACACCACACGA 875
Query 749 CATACAAGCATAACTATGGTCATTATACCATATGGATGGATTGGATGTTTGGCTCCCTTA 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 876 CATACAAGCATAACTATGGTCATTATACCATATGGATGGATTGGATGTTTGGCTCTCTTA 935
Query 809 GGGTTCCT-T-T-AGCAGAAGAAGACA 832
||| |||| | | || |||||| ||||
Sbjct 936 GGGATCCTCTCTTAGAAGAAGATGACA 962
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41694342010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5