BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477497
Length=1546
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02600.1 | Symbols: LPP3, ATLPP3 | lipid phosphate phosphata... 2141 0.0
AT3G18220.1 | Symbols: | Phosphatidic acid phosphatase (PAP2) ... 78.7 2e-13
> AT3G02600.1 | Symbols: LPP3, ATLPP3 | lipid phosphate phosphatase
3 | chr3:551351-554671 FORWARD LENGTH=1538
Length=1538
Score = 2141 bits (1159), Expect = 0.0
Identities = 1451/1578 (92%), Gaps = 76/1578 (5%)
Strand=Plus/Plus
Query 1 GATTAGATTGTCCCTA-GAGTCACTGTTATCGCTCTTTCAATTACTGTAATGTTGAATTG 59
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GATTAGATTGTCCCTAGGAGTCACTGTTATCGCTCTTTCAATTACTGTAATGTTGAATTT 60
Query 60 GGGTTTCATCTACTAAATAAGATGAAGTTTCTTGTCTCTTTCTG----------TC---- 105
|||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 61 GGGTTTCATCTACTAACTAAGATGAAGTTTCTTGTCTCTTTCTGTCTCCCTCTTTCTTAA 120
Query 106 -T-C-C-CTA--TTTC--TTAATTGCTCCTCTTCAGCTAACTTTGGGGCTTTTAAGTGAT 157
| | | ||| |||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 TTCCTCTCTACTTTTCGGTTAATTGCTCCTCTTCAGCTAACTTTGGGGCTTTAAAGTGAT 180
Query 158 ACAATGGCTCGCTTCAGTTTTCCTTGTTTTCCAAATTTTGGGGGTTTTAATCAGGCTGTG 217
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGGATGGCTCGCTTCAGTTTTCCTTGTTTTCCAAATTTTGGGGGTTTTAATCAGGCTGTG 240
Query 218 ACAAATCGAGGGCCTGAGATTTCAGAAACTGCTGATAATTGGGTCTCACCATCTGACATT 277
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACAAATCGGGGGCCTGAGATTTCAGAAACTGCTGATAATTGGGTCTCACCATCTGACATT 300
Query 278 CCACTCATAGAACCTAATAGTAAAGAGCACAGGATGAGAGAGGCACAGCTTGGCGCTCAC 337
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 301 CCACTCATAGAACCTAATAGTAAAGAGCACAGGATGAGAGAGGCACAGCTAGGCGGTCAC 360
Query 338 ACTGTGAGGTCCCATGGAATGACTGTTGCAAGGACTCACATGCATGATTGGATCATTCTC 397
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACTCTGAGGTCCCATGGAATGACTGTTGCAAGGACTCACATGCATGATTGGATCATTCTC 420
Query 398 GTGTTACTTGTTATTCTTGAGTGCGTACTCCTTATAATCCACCCGTTTTATCGCTTTGTT 457
||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 421 GTGTTACTTGTTATTCTCGAGTGTGTACTCCTTATAATCCACCCATTTTATCGCTTTGTT 480
Query 458 GGGAAAGATATGATGACTGATCTCAGTTACCCGTTAAAGAGTAACACCGTACCAATTTGG 517
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 481 GGTAAAGATATGATGACTGATCTAAGTTACCCGTTAAAGAGTAACACCGTACCAATTTGG 540
Query 518 TCTGTCCCGGTGTATGCGATGCTGTTACCTTTGGTAGTCTTCATATTTATCTACTTCCGT 577
||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 541 TCTGTCCCGGTATATGCGATGCTGTTACCTTTGGTAATCTTCATCTTTATCTACTTCCGT 600
Query 578 CGAAGAGATGTTTATGATCTTCATCACGCGGTGCTAGGTCTCTTATACTCTGTTCTGGTG 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CGAAGAGATGTTTATGATCTTCATCACGCGGTGCTAGGTCTCTTATACTCTGTTCTGGTG 660
Query 638 ACAGCAGTACTTACCGATGCAATAAAGAATGCAGTTGGTCGACCACGTCCTGACTTCTTC 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ACAGCAGTACTTACCGATGCAATAAAGAATGCAGTTGGTCGACCACGTCCTGACTTCTTC 720
Query 698 TGGCGTTGTTTTCCAGATGGCAAAGCTCTTTATGATAGCCTTGGAGATGTTATATGCCAT 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TGGCGTTGTTTTCCAGATGGCAAAGCTCTTTATGATAGCCTTGGAGATGTTATATGCCAT 780
Query 758 GGTGATAAAAGCGTCATAAGGGAAGGGCACAAAAGCTTCCCAAGCGGACACACCTCTTGG 817
|||||||||||||||||||||||||| ||||||||||| ||||| |||||||| || |||
Sbjct 781 GGTGATAAAAGCGTCATAAGGGAAGGTCACAAAAGCTTTCCAAGTGGACACACGTCATGG 840
Query 818 TCTTTTGCGGGTCTGGGATTTCTTTCGCTGTACTTATCGGGAAAGATTCAAGCATTTGAT 877
|||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 841 TCTTTTTCGGGTCTCGGATTTCTTTCGCTTTACTTATCGGGAAAGATTCAAGCATTTGAC 900
Query 878 GGTAAAGGCCACGTTGCAAAGCTATGCATAGTCATACTCCCTTTGCTATTTGCAGCTCTT 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GGTAAAGGCCACGTTGCAAAGCTATGCATAGTCATACTCCCTTTGCTATTTGCAGCTCTT 960
Query 938 GTGGGTATTTCCCGTGTTGATGACTATTGGCATCATTGGCAAGACGTCTTTGCAGGAGGC 997
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GTCGGCATTTCCCGTGTTGATGACTATTGGCATCATTGGCAAGACGTCTTTGCAGGAGGC 1020
Query 998 TTGCTAGGT-TTGTTTTCTCTCTCTACTCAAAAAGGTCTTGTGATCTGTTATCTCCAATT 1056
||||||||| ||| | ||||||| || ||| || |||| | | ||||
Sbjct 1021 TTGCTAGGTCTTG----CGATCTCTAC--AA-----TCT-GTTATCT-T---C---AATT 1061
Query 1057 TTTCCCGCCACCATATCACACCGAAGGTTGGGGACCATATGCTTACTTCCAAGTGTTGGA 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 TTTCCCGCCACCATATCACACCGAAGGTTGGGGACCATATGCTTACTTCCAAGTGTTGGA 1121
Query 1117 GGCGGCGAGAGTGCAAGGAACCGCGAATGGAGCAGTGCAGCAGCCACC-CC--AAGTTGA 1173
||| ||||||||||||||| | ||||||||||||||||||||||| || || ||||| |
Sbjct 1122 GGCTGCGAGAGTGCAAGGAGCAGCGAATGGAGCAGTGCAGCAGCCGCCGCCCCAAGTTAA 1181
Query 1174 TAACGGTGAAGAAGAAGACGGTGGGTTTATGGGTTTACATTTGGTGGATAATCCGACTGT 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1182 CAACGGTGAAGAAGAAGACGGTGGGTTTATGGGTTTACATTTGGTGGATAATCCGACTAT 1241
Query 1234 GAGGAGAGAAGAAGATGTAGAAACTGGTAGAGGCTGAGATGAAGAAACTCTGAAGCTGGT 1293
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 GAGGAGAGAAGAGGATGTAGAAACTGGTAGAGGCTGAGATGAAGAAACTCTGAAGCTGGT 1301
Query 1294 TTGGTTACTTCTTAGGACACTTTCTCTTGTTCTTCTTGATTCTTTGTTTGACTACTTAAG 1353
|||||||||| ||||||||||||||||||||||| ||||||||||||| ||| |||| ||
Sbjct 1302 TTGGTTACTTGTTAGGACACTTTCTCTTGTTCTT-TTGATTCTTTGTTGGACAACTTTAG 1360
Query 1354 TAGATTTCTGTAAGATAACTTAGTAACAACTACAATCgtttggttttggttttggttttg 1413
||||||||| |||||||||| | | || | |||||||||||||||||||||||
Sbjct 1361 TAGATTTCTCTAAGATAACT-A--A-----TAGAGTCGTTTGGTTTTGGTTTTGGTTT-- 1410
Query 1414 gtttAAATGGATGACCGGTATTTATGGGTCCGGTATTGGTATCCGTTAAAGTTTATGCTT 1473
||||||||||||||| ||||||| |||||||||||| ||||||||||||| ||
Sbjct 1411 ----AAATGGATGACCGGT-TTTATGGTTCCGGTATTGGTG---GTTAAAGTTTATG-TT 1461
Query 1474 TTT-AA----GTTAACTGGATAAATGTAGCTTTATTATTTTTTCAATATTTTAAGAATTG 1528
||| || ||| |||||||||||||||||||||| || |||||||||||| ||||
Sbjct 1462 TTTCAAAAAAGTTCACTGGATAAATGTAGCTTTATT-TT----CAATATTTTAAGGATTG 1516
Query 1529 AAATTGGATTTGAACTTA 1546
|||| |||||||||||||
Sbjct 1517 AAATCGGATTTGAACTTA 1534
> AT3G18220.1 | Symbols: | Phosphatidic acid phosphatase (PAP2)
family protein | chr3:6247914-6249960 FORWARD LENGTH=1264
Length=1264
Score = 78.7 bits (42), Expect = 2e-13
Identities = 267/370 (72%), Gaps = 37/370 (10%)
Strand=Plus/Plus
Query 555 TCTTCATA-TTTATCTACTT-CCGTCGAAGAGATGTTTATGATCTTCATCACGCGGTGCT 612
|||||||| | || ||| || | |||||||||||||||||||||||||||||| | ||
Sbjct 421 TCTTCATAGTGTA-CTA-TTACTATCGAAGAGATGTTTATGATCTTCATCACGCCATTCT 478
Query 613 AGGTCTCTTATACTC-TGTTCTGGTGACAGCAGT-ACTTACCGATGCAAT-AAAGAATGC 669
||| || || ||| ||| || ||||| | ||| || || ||| | || ||||| ||
Sbjct 479 CGGTATCGGATTCTCATGT-CTTGTGACTGGAGTCACC-ACTGATTCCATCAAAGAC-GC 535
Query 670 AGTTGGTCGACCACGTCCTGACTTCTTCTGGCGTTGTTTTCC-AGATGGCAAAGCTC--T 726
|| ||| | ||||| ||| ||||||| | || |||||||| | |||| ||| | |
Sbjct 536 GGTCGGTAGGCCACGCCCTAACTTCTTTTACCGATGTTTTCCCA-ATGGTAAACCGAAAT 594
Query 727 TT-AT--G-ATAGCCTTGGAGATGTTATATGCCATGGTGATAAAA-GCGTCAT-AAGGGA 780
|| || | ||| | | | |||||| | || ||||| | ||||| | | || || | |
Sbjct 595 TTCATCCGGATA-C-TAAG-GATGTTGTGTGTCATGGAGTTAAAAAGA-TAATCAAAG-A 649
Query 781 AGGGCACAAAAGCTTCCCAAGCGGACACACCTCTTGGTCTTTTGCGGGTCTGGGATTTCT 840
||| |||| || ||||| || || ||||| || ||||| || || ||| | ||||
Sbjct 650 AGGTTACAAGAGTTTCCCTAGTGGTCACACTTCATGGTCATTCGCTGGTTTAAC-TTTCC 708
Query 841 TT-CGCTG-TACTTATCGGG-AAAGATTCAA-G-CATTTGATGGTAA-AGGCCACGTTGC 894
| || || ||||||||||| ||| || ||| | | ||||| | || ||| ||||| ||
Sbjct 709 TAGCG-TGGTACTTATCGGGTAAA-AT-CAAAGTC-TTTGACAG-AAGAGGTCACGTGGC 763
Query 895 AAAGCTATGC 904
|||||||||
Sbjct 764 GAAGCTATGC 773
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76304828400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5