BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477504
Length=1635
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02630.1 | Symbols: | Plant stearoyl-acyl-carrier-protein d... 2377 0.0
AT5G16240.1 | Symbols: | Plant stearoyl-acyl-carrier-protein d... 1158 0.0
> AT3G02630.1 | Symbols: | Plant stearoyl-acyl-carrier-protein
desaturase family protein | chr3:562030-564870 FORWARD LENGTH=1671
Length=1671
Score = 2377 bits (1287), Expect = 0.0
Identities = 1461/1542 (95%), Gaps = 23/1542 (1%)
Strand=Plus/Plus
Query 1 CCCAAAGCTTCTGCTTCACATTGTCTCTTTTCACAGTCT--CAGAGCATAGAAATAATCG 58
||||||| |||| |||||| ||||||||||||||||||| || ||||||||||||||||
Sbjct 1 CCCAAAGTTTCTTCTTCACCTTGTCTCTTTTCACAGTCTCACACAGCATAGAAATAATCG 60
Query 59 AAAGTTTGTCTTTTTAAAATCTGGGATTTGCttttttttttGTTCATTGATCATCTTCGA 118
|||| || |||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 61 AAAGATT-TCTTTTTAAAATCTGGGATTTG---TTTTTTTTGTTCATTGATCATTTTCGA 116
Query 119 TTGTTGGAGAAGaaaaaaaTGGCGATGGCTATGGATCGGATCGTCTTCTCCCCTTCATCT 178
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 TTGTTAGAGAAGAATCAAATGGCGATGGCTATGGATCGGATCGTCTTCTCCCCTTCATCT 176
Query 179 TACGTCTATCGTCCTTGTCAAGTTAGGGGATCCAGATCTTCTAGAGTTTCCATGGCTTCT 238
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 177 TACGTCTATCGTCCTTGTCAAGCTAGGGGATCCAGATCTTCCAGAGTTTCCATGGCTTCT 236
Query 239 ACGATTCGCTCTGCTACTACAGAGGTTACGAATGGAAGGAAACTGTATATCCCTCCTAGA 298
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 237 ACGATTCGCTCTGCGACTACAGAGGTTACGAATGGAAGGAAACTGTATATCCCTCCCAGA 296
Query 299 GAGGTGCATGTTCAAGTGAAACATTCAATGCCGCCACAAAAGTTGGAGATCTTCAAGTCT 358
||||||||||| ||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct 297 GAGGTGCATGTCCAAGTCAAACATTCAATGCCGCCACAAAAGTTAGAGATCTTTAAGTCT 356
Query 359 TTAGAAGGATGGGCTGATGAAACCCTGTTGACTTATTTAAAGCCTGTTGAGAAATCGTGG 418
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 357 TTAGAAGGATGGGCTGATGAAACCCTGTTGACTTATTTAAAACCTGTTGAGAAATCGTGG 416
Query 419 CAGCCTACCGATTTTCTTCCCGAACCTGAGTCAGAAGGATTTTATGACCAAGTCAAGGAG 478
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 417 CAGCCTACCGATTTTCTTCCCGAACCTGAGTCGGAAGGATTCTATGACCAAGTCAAGGAG 476
Query 479 TTAAGGGAAAGGTGTAAGGAACTTCCTGATGACTATTTTGTGGTGCTTGTTGGGGATATG 538
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CTAAGGGAAAGGTGCAAGGAACTTCCTGATGACTATTTTGTGGTGCTTGTTGGGGATATG 536
Query 539 ATCACTGAAGAAGCACTTCCTACGTACCAGACGATGTTGAACACATTGGATGGTGTTAGG 598
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 537 ATCACTGAAGAAGCACTTCCTACTTACCAGACCATGTTGAACACATTGGATGGTGTTAGG 596
Query 599 GATGAGACAGGTGCAAGTCCTACTCCATGGGCTATTTGGACCAGGGCTTGGACTGCTGAG 658
||||||||||| || ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 597 GATGAGACAGGAGCTAGTCCTACTCCTTGGGCTATATGGACCAGGGCTTGGACTGCTGAG 656
Query 659 GAGAATAGACATGGGGATCTTCTTAACAAGTATCTTTATTTGTCTGGTCGAGTAGACATG 718
|||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||
Sbjct 657 GAGAATAGACATGGGGATCTCCTTAACAAGTATCTTTATCTGTCTGGTCGGGTAGACATG 716
Query 719 AGGCAGATTGAAAAGACAATTCAGTACCTGATTGGGTCTGGAATGGATCCAAAAACTGAA 778
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 717 AGGCAGATTGAAAAGACTATTCAGTACCTGATTGGTTCTGGAATGGATCCAAAAACTGAA 776
Query 779 AATAATCCTTACTTGGGTTTCATCTACACATCCTTTCAAGAAAGAGCGACCTTCATCTCC 838
|| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 777 AACAACCCTTACTTGGGTTTCATCTACACATCATTTCAAGAAAGAGCGACCTTCATCTCC 836
Query 839 CATGGAAACACTGCCAGACTGGCGAAAGATCGTGGAGATTTGAAACTTGCGCAGATATGC 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 CATGGAAACACTGCCAGACTGGCGAAAGATCGTGGAGATTTGAAACTTGCGCAGATATGC 896
Query 899 GGGACCATTGCTGCTGATGAGAGGCGTCATGAGACTGCTTACACCAAGATTGTGGAGAAG 958
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 897 GGGACCATTGCTGCTGATGAGAGGCGTCATGAGACTGCTTACACCAAGATTGTAGAGAAG 956
Query 959 CTCTTTGAAATTGACCCTGATGGCACGATCTTGGGCTTGGCTGATATGATGAAGAAAAAG 1018
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 957 CTCTTTGAAATTGACCCTGATGGCACGATCTTGGGCCTGGCTGATATGATGAAGAAAAAG 1016
Query 1019 ATCTCAATGCCTGCACATTTAATGTATGATGGCCAAGATGATAACCTGTTTGAGCACTTC 1078
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 ATATCAATGCCTGCACATTTAATGTATGATGGCCAAGATGATAACCTGTTTGAGCACTTC 1076
Query 1079 TCAACTGTTGCCCAGAGGCTTGGTGTCTACACCGCCAAGGACTATGCTGATATTCTGGAG 1138
||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1077 TCAACCGTTGCCCAGAGGCTCGGTGTCTACACTGCCAAGGACTATGCTGATATTCTGGAG 1136
Query 1139 TTTCTTGTTGAACGGTGGAATGTGGAGACTTTGTCAGGCCTTTCTAGTGAAGGACACAGG 1198
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1137 TTTCTTGTTGAACGGTGGAATGTGGAGACTTTGACAGACCTTTCTAGTGAAGGACACAGG 1196
Query 1199 GCTCAGGACTTTGTCTGCGGACTTCCTGCAAGAATCCGCAAAATTGAAGAGAGAGCTCAA 1258
|| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1197 GCCCAGGACTTTGTCTGCGGACTACCTGCAAGAATCCGTAAAATTGAAGAGAGAGCTCAA 1256
Query 1259 GGAAGAGCCAAAGAAGCAGCCAAAAACATACCATTCAGCTGGATTTTTGGTAGAAATATT 1318
||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||
Sbjct 1257 GGAAGAGCCAAAGAAGCTGCCAAAAACATACCATTCAGCTGGATATTTGGTCGAAATATC 1316
Query 1319 AGGGCTTAAAAAGTTTACTACACAATTCTCCTCTTTCGCACT-ATCCCAAGTAAGCCATA 1377
||||||||| |||||||||||||||||||| | || | || | |||||||||||| ||||
Sbjct 1317 AGGGCTTAAGAAGTTTACTACACAATTCTC-T-TT-C-CAATTATCCCAAGTAAGTCATA 1372
Query 1378 AAGGTCTTCACCAACCATCTCACCAATGAAGTACCAGTTTT-AAGACCACGAAAGTTCAT 1436
|||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1373 AAGGTCTTCACCAACCATTTCACCAATGAAGGACCAGTTTTTAAGACCACGAAAGTTCAT 1432
Query 1437 T-GAATATGTTTTGTACTTTTGTTTTTTACATGGAACATTGTAGATAAAGTTATGTGGTT 1495
| |||| || || ||| ||||| ||| ||||||||||||||||||||||||||||
Sbjct 1433 TTGAAT--GT---GT--TTT-GTTTTATAC--GGAACATTGTAGATAAAGTTATGTGGTT 1482
Query 1496 AGGTTATGTTTCTTGGTTGAATCAGTCAAGACCAAAGAAAAT 1537
||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1483 AGGTTATGTTTCTTGTTTGAATCAGTCAAGACCAAAGAAAAT 1524
> AT5G16240.1 | Symbols: | Plant stearoyl-acyl-carrier-protein
desaturase family protein | chr5:5306807-5309932 FORWARD LENGTH=1652
Length=1652
Score = 1158 bits (627), Expect = 0.0
Identities = 925/1069 (87%), Gaps = 20/1069 (2%)
Strand=Plus/Plus
Query 271 TGGAAGGAAACTGTATATCCCTCCTAGAGAGGTGCATGTTCAAGTGAAACATTCAATGCC 330
|||||||||||||||||| |||||| ||||||| ||| |||||||||| ||||||||||
Sbjct 303 TGGAAGGAAACTGTATATTCCTCCTCGAGAGGTTCATCTTCAAGTGAAGTATTCAATGCC 362
Query 331 GCCACAAAAGTTGGAGATCTTCAAGTCTTTAGAAGGATGGGCTGATGA-AACCCTGTTGA 389
||||||||| ||||||| |||||||| ||||||||||||||| |||| || | |||||
Sbjct 363 ACCACAAAAGCTGGAGATTTTCAAGTCCTTAGAAGGATGGGCTAATGACAA-CTTGTTGG 421
Query 390 CTTATTTAAAGCCTGTTGAGAAATCGTGGCAGCCTACCGATTTTCTTCCC-GAACCTGAG 448
|||| ||||| |||||||||||||| ||||| || || ||||||| |||| |||||||||
Sbjct 422 CTTACTTAAAACCTGTTGAGAAATCATGGCAACCAACTGATTTTC-TCCCTGAACCTGAG 480
Query 449 TCAGAAGGATTTTATGACCAAGTCAAGGAGTTAAGGGAAAGGTGTAAGGAACTTC-CTGA 507
||||||||||| ||||||||||| ||||||||||| |||||||||||||| | || ||||
Sbjct 481 TCAGAAGGATTCTATGACCAAGTTAAGGAGTTAAGAGAAAGGTGTAAGGAGC-TCTCTGA 539
Query 508 TGACTATTTTGTGGTGCTTGTTGGGGATATGATCACTGAAGAAGCACTTCCTACGTACCA 567
|||||| || | ||||||||||| ||||||||||| || ||||||||||| || || ||
Sbjct 540 TGACTACCTTATAGTGCTTGTTGGTGATATGATCACAGAGGAAGCACTTCCGACTTATCA 599
Query 568 GACGATG-TTGAACACATTGGATGGTGTTAGGGATGAGACAGGTGCAAGTCCTACTCCAT 626
||| ||| || || |||||||| || ||||| |||||||| || |||||||| ||||| |
Sbjct 600 GACCATGATT-AATACATTGGACGGGGTTAGAGATGAGACGGGAGCAAGTCCAACTCCTT 658
Query 627 GGGCTA-TTTGGACCAGGGCTTGGACTGCTGAGGAGAATAGACATGGGGATCTTCTTAAC 685
|||| | | ||||| ||||| |||||||| || |||||||||||||| ||||||||||||
Sbjct 659 GGGC-AGTATGGACTAGGGCATGGACTGCGGAAGAGAATAGACATGGTGATCTTCTTAAC 717
Query 686 AAGTATCTTTATTTGTCTGGTCGAGTAGACATGAGGCAGATTGAAAAGACAATTCAGTAC 745
||||| |||||| ||||||| |||||||||||||| ||||||||||| || ||||| |||
Sbjct 718 AAGTACCTTTATCTGTCTGGACGAGTAGACATGAGACAGATTGAAAAAACTATTCAATAC 777
Query 746 CTGATTGGGTCTGGAATGGATCCAAAAACTGAAAATAATCCTTACTTGGGTTTCATCTAC 805
|| ||||| |||||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 778 CTCATTGGTTCTGGAATGGATCCAAAAACTGAAAACAATCCTTACTTGGGATTCATATAT 837
Query 806 ACATCCTTTCAAGAAAGAGCGACCTTCATCTCCCATGGAAACACTGCCAGACTGGCGAAA 865
|| || |||||||||||||| || ||||||||||||||||||||||| |||||||| |||
Sbjct 838 ACTTCTTTTCAAGAAAGAGCTACATTCATCTCCCATGGAAACACTGCTAGACTGGC-AAA 896
Query 866 -GATCGTGGAGATTTGAAACTTGCGCAGATATGCGGGACCATTGCTGCTGATGAGAGGCG 924
|||| |||||| |||| ||||| | |||| || || |||||||||||||||||||||||
Sbjct 897 GGATCTTGGAGACTTGACACTTGGGAAGATTTGTGGCACCATTGCTGCTGATGAGAGGCG 956
Query 925 TCATG-AGACTGCTTACACCAAGATTGTGGAGAAGCTCTTTGAAATTGACCCTGATGGCA 983
|||| | || || |||||||||||||| |||||||||||||||||||| |||||| ||
Sbjct 957 CCATGAACAC-GCCTACACCAAGATTGTAGAGAAGCTCTTTGAAATTGATCCTGATACCA 1015
Query 984 CGA-TCTTGGGCTTGGCTGATATGATGAAGAAAAAGATCTCAATGCCTGCACATTTAATG 1042
| | || ||||||| ||||| ||||||| |||||||||||| |||||||| ||||| |||
Sbjct 1016 C-AGTCGTGGGCTTTGCTGACATGATGAGGAAAAAGATCTCGATGCCTGCTCATTTGATG 1074
Query 1043 TATGATGGCCAAGATGATAACCTGTTTGAGCACTTCTCAACTGTTGCCCAGAGGCTTGGT 1102
|||||||| | |||||||| || ||||| |||||||| | || |||||||||||||||
Sbjct 1075 TATGATGGTCGTGATGATAATCTATTTGATCACTTCTCGTCCGTGGCCCAGAGGCTTGGT 1134
Query 1103 GTCTACACCGCCAAGGACTATGCTGATATTCTGGAGTTTCTTGTTGAACGGTGGAATGTG 1162
|||||||| |||||||||||||||||||| ||| | |||||| ||| |||||||||||
Sbjct 1135 GTCTACACTGCCAAGGACTATGCTGATATACTGCAACATCTTGTGGAAAGGTGGAATGTG 1194
Query 1163 GAGACTTTGTCAGGCCTTTCTAGTGAAGGACACAGGGCTCAGGACTTTGTCTGCGGACTT 1222
|||| ||||||| |||||||||||||||| ||||||| ||||||| |||| ||| ||
Sbjct 1195 GAGAAGTTGTCAGACCTTTCTAGTGAAGGAAACAGGGCCCAGGACTACCTCTGTGGA-TT 1253
Query 1223 -CCTGCAAGAATCCGCAAAATTGAAGAGAGAGCTCAAGGAAGAGCCAAAGAAGCAGCCAA 1281
||||| |||||||||||| |||||||||| |||||||| ||| ||||||||||||| ||
Sbjct 1254 ACCTGCTAGAATCCGCAAACTTGAAGAGAGGGCTCAAGGGAGAACCAAAGAAGCAGCAAA 1313
Query 1282 AAACATACCATTCAGCTGGATTTTTGGTAGAAATATT-AGGGCTTAAAA 1329
|||||||||||||||||||||||||||| || | | | |||||||||||
Sbjct 1314 AAACATACCATTCAGCTGGATTTTTGGTCGAGA-AGTCAGGGCTTAAAA 1361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80772676905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5