BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477507
Length=1628
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02660.1 | Symbols: emb2768 | Tyrosyl-tRNA synthetase, class... 2597 0.0
> AT3G02660.1 | Symbols: emb2768 | Tyrosyl-tRNA synthetase, class
Ib, bacterial/mitochondrial | chr3:570134-572345 REVERSE
LENGTH=1738
Length=1738
Score = 2597 bits (1406), Expect = 0.0
Identities = 1558/1632 (95%), Gaps = 7/1632 (0%)
Strand=Plus/Plus
Query 1 AAATTTATGGCATATGCAACAGGAATGACGCTTGCTTCAAGGAGTATCTTGCCTATGTGT 60
|||||||||||||||||||||||||| ||| |||| ||||||||||| |||||||| |||
Sbjct 110 AAATTTATGGCATATGCAACAGGAATAACGTTTGCCTCAAGGAGTATTTTGCCTATTTGT 169
Query 61 TCCAGAA-CTTGCTTATCTCCCTTACGTGTCGCTTCTTTACTCGTTTTTCCTGAGAAATC 119
||||||| ||| |||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 170 TCCAGAACCTT-CTTATCTCCCTTGCGTGTCGCTTCTTTACTCGTCTTTCCTGAGAAATC 228
Query 120 ATCCGCAACTTTCTTCAGAAGGGTCCAAGTTCCTCACCTTTTCTCCACTTCTACTACTCC 179
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 229 ATCTGCAACTTTCTTCAGAAGGGTCCAAGTTCCTCACCTTTTTTCCACTTCTACTACTAC 288
Query 180 TCTGTTTTCCTCTGTTAAGTGCTCAATTCAATCTACTTCATCTCTTGAGACAGAAAATCA 239
|||||| || ||||||||||| |||||||| ||||||||||||| ||||||||| |||||
Sbjct 289 TCTGTTCTCTTCTGTTAAGTGTTCAATTCATTCTACTTCATCTCCTGAGACAGAGAATCA 348
Query 240 AGCTGTTTCTCGCCCTAATGTTGTCGATATACTTGAAGAAAGAGGTCTCCTTGAGTCGAT 299
|||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 349 AGCTGTTTTTCGCCCTAATGTAGTCGATATACTTGAAGAAAGAGGTCTCCTCGAGTCAAT 408
Query 300 CACAAGCGAAAATCTCAGGTCAGCTTGTTCTGATCCTAAAGTAGCTCCTCTAAGGGTCTA 359
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 409 CACAAGCGAGAATCTCAGGTCAGCTTGTTCTGATCCTAAAGTAGCTCCTTTAAGGGTCTA 468
Query 360 CTGCGGGTTTGATCCAACGGCTGAGAGTTTACACTTAGGTAATCTACTTGGTATCATTGT 419
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 469 CTGTGGGTTTGATCCAACGGCTGAGAGTTTACACTTGGGTAATCTACTTGGTATCATTGT 528
Query 420 GCTTTCTTGGTTCCAAAGATGTGGACATCAAGCTGTTGGTTTAATTGGTGGTGCCACGGG 479
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 529 GCTTTCTTGGTTCCAAAGATGTGGACATCAAGCCGTTGGTTTAATTGGTGGTGCCACGGG 588
Query 480 ACGAGTTGGTGACCCATCTGGTAAAAGCCTAGAAAGACCTGAGCTTGGCGCTGATACACT 539
||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 589 ACGGGTTGGTGACCCATCTGGTAAAAGCTTAGAAAGACCTGAGCTTGACGCTGATACACT 648
Query 540 GGAGAAAAACATTGCCGGGATTA-AAAGAATCATTATCAAGATTCTGGGTGGCAATCCGA 598
||||||||| ||||| ||||||| ||| |||||||||||||||||| ||| | |||||||
Sbjct 649 GGAGAAAAATATTGCGGGGATTACAAA-AATCATTATCAAGATTCTAGGTAGTAATCCGA 707
Query 599 GTTCCGGTGGCTCTTACGTGATTTTTAATAACTATGACTGGTGGAAAGATATGACAATGC 658
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 GTCCCGGTGGCTCTTACGTGATTTTTAATAACTATGACTGGTGGAAAGATATGACAATGC 767
Query 659 TCGACTTTCTGAACAAAGTCGGTAGGTTTGCTAGGGTTGGTACTATGATGGCAAAGGAGA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 TCGACTTTCTGAACAAAGTCGGTAGGTTTGCTAGGGTTGGTACTATGATGGCAAAGGAGA 827
Query 719 GTGTGAAGAAGAGATTAGAATCAGAACAAGGTATGAGCTACACCGAGTTCACTTATCAGT 778
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 828 GTGTGAAGAAGAGATTAGAATCAGAGCAAGGTATGAGCTACACCGAGTTCACTTATCAGT 887
Query 779 TATTGCAAGCCTATGATTTTCTTCACCTGTTCAAGAACGAAGGGATCAATGTTCAGATAG 838
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 TGTTGCAAGCCTATGATTTTCTTCACCTGTTCAAGAACGAAGGGATCAATGTTCAGATAG 947
Query 839 GTGGTAGTGATCAATGGGGGAATATAACAGCTGGAACTGATTTGATCCGGAAGATTCTCC 898
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 948 GTGGCAGTGATCAATGGGGGAATATAACAGCTGGAACTGATTTGATCAGGAAGATTCTCC 1007
Query 899 AAGCAGAAGAAGCTGCTTACGGGCTAACATTTCCCCTCCTATTGAAAAACGATGGGACGA 958
||||||||||||| |||||||||||||||||||| |||||| ||||||||||||| ||||
Sbjct 1008 AAGCAGAAGAAGCGGCTTACGGGCTAACATTTCCTCTCCTACTGAAAAACGATGGAACGA 1067
Query 959 AATTCGGGAAATCAGAAGATGGAGCAATCTGGCTATCTCCTTCGATGCTATCGCCTTATA 1018
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1068 AATTCGGGAAATCAGAAGATGGAGCAATCTGGCTATCTCCTTCGATGTTATCGCCTTATA 1127
Query 1019 AGTTTTATCAGTACTTCTTCTCAGTTCCAGACGTTGACGTGATACGCTTCTTAAAGAC-T 1077
|||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct 1128 AGTTCTATCAGTACTTCTTTTCAGTTCCAGACGTTGATGTGATACGCTTCTTAAAGACAT 1187
Query 1078 CTAACTTTTCTGAGTTTGGATGAGATAAAGATCTTGGAAGATCAAATGACCAAACCCGGG 1137
|||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1188 -TAACATTTCTGAGCTTGGATGAGATAAAGATCTTGGAAGATCAAATGAGCAAACCCGGC 1246
Query 1138 TATGTTCCCAACACCGCACAAATCAAACTCGCTGAAGAAGTAACCAGATTTGTACATGGC 1197
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1247 TATGTTCCCAACACCGCACAAATCAAACTCGCTGAAGAAGTAACCAGATTCGTACATGGC 1306
Query 1198 GAAGAGGGCTTGAAGGAAGCCATTAAAGCAACAGAAGCTTTAAGACCAGGAGCTGAGACA 1257
|||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1307 GAAGAGGGTTTGAAAGAAGCCATTAAAGCAACAGAAGCTTTAAGACCAGGTGCTGAGACA 1366
Query 1258 AAGCTTGATTGGAACTTGATTGAGAGAATAGCAGAGGATATACCTTCTTGCTCACTGCCC 1317
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1367 AAGCTTGATTGGAACTTGATTGAGAGAATAGCAGAGGATATACCTTCTTGCTCACTGCCT 1426
Query 1318 ATTGATCGAGTGTCGGGTTTATCGATTGTGGATCTATCAGTTTCTGCGGGTTTGTTTGAG 1377
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1427 ATTGATCGAGTGTCGGGTTTATCGATTGTGGATCTATCGGTTTCTGCAGGTTTGTTTGAG 1486
Query 1378 AGCAAATCTGCTGCGAGGAGAATGTTGAAGCAAGGTGGGTTTTATATGAACAATGAGAGA 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1487 AGCAAATCTGCTGCGAGGAGAATGTTGAAGCAAGGTGGGTTTTATATGAACAATGAGAGA 1546
Query 1438 GTTGATGATGAGAACAAGAGAGTTGAAGAAGAGGATATTGTTGAAGGGAAAGGTCTTGTT 1497
|||||||||||||| |||||||| || |||||||||||||||||||||| ||||||||||
Sbjct 1547 GTTGATGATGAGAATAAGAGAGTGGACGAAGAGGATATTGTTGAAGGGAGAGGTCTTGTT 1606
Query 1498 CTATCAGCAGGCAAGAAGAATAAAGTGGTCGTTAGAATTTCCTGAGATTTTT-CATGACA 1556
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||
Sbjct 1607 CTATCAGCAGGCAAGAAGAATAAAGTGGTCGTTAGAATTTCCTGATTTTTTTTCATAACA 1666
Query 1557 AATCTGTACTCATTTTATTACGTATTTTGTTATGAACCAGCATTGAATCACTAATGGTTT 1616
||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct 1667 AATCTGTACTCATTTTATTACGTATTTTGTTATGAACTAACGTTGAATCACTAATGGTTT 1726
Query 1617 ATAACTTTTCTC 1628
||||||||||||
Sbjct 1727 ATAACTTTTCTC 1738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80421273090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5