BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477508
Length=1707
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02680.1 | Symbols: NBS1, ATNBS1 | nijmegen breakage syndrom... 2512 0.0
> AT3G02680.1 | Symbols: NBS1, ATNBS1 | nijmegen breakage syndrome
1 | chr3:576378-579559 FORWARD LENGTH=1855
Length=1855
Score = 2512 bits (1360), Expect = 0.0
Identities = 1547/1636 (95%), Gaps = 17/1636 (1%)
Strand=Plus/Plus
Query 1 ATGGTTTGGGGTCTCTTTCCCGTTGATCCTCTTTCAGGTGAAGATAAATACTACATCTTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGTTTGGGGTCTCTTTCCCGTTGATCCTCTTTCAGGTGAAGATAAATACTATATCTTT 60
Query 61 TCAAAGGGTATTTACAAGATTGGTCGAAAAGGATGTGATATTATTATCAATAAGGATAAG 120
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 TCAAAGGGTATTTACAAGGTTGGTCGAAAAGGATGTGATATAATTATCAATAAGGATAAG 120
Query 121 GGGGTATCTAGGATCCACGCTGAGTTAAC-TTT--TG-----A----TTCAACCTCTCGG 168
||||||||||||||||||||||||||||| ||| || | |||||||||||||
Sbjct 121 GGGGTATCTAGGATCCACGCTGAGTTAACTTTTGATGCAACAACTGTTTCAACCTCTCGG 180
Query 169 AGGGACAA---ATCTTCAGATACCTCCTCCTTTGTTATCCGTGTCAAAGATTGTTCAAAG 225
||| |||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 181 AGGAACAAGTCTTCTTCAGATACATCATCCTTTGTTATCCGTGTCAAAGATTGTTCAAAG 240
Query 226 TATGGCACCTTTATCAAAACTGACCTGGGGACAAAATACAAAGTTCATGAGCTACCTAAT 285
||||| || ||| ||||||||||||||||||||||| | ||||||||||||||| |||||
Sbjct 241 TATGGGACTTTTGTCAAAACTGACCTGGGGACAAAAGATAAAGTTCATGAGCTATCTAAT 300
Query 286 AAGGATAAAATTCTCCAAGATGGAGATGTTATCGCGTTTGGTACAGGTTCAGCTACTTAC 345
||||| |||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 301 AAGGAGAAAATTCTCCAAGATGGAGATGTTATCGCGTTTGGTACAGGTTCTGCAATTTAC 360
Query 346 AGGTTGTCCTTAATTCCGCTTGTATTTTACTTCTGCCCTTCCTCTGAGACGTTTAAGGTG 405
||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 361 AGGTTGTCCTTAATTCCGCTTGTTTTTTACTTGTGCCCTTCCTCTGAGACCTTTAAGGTG 420
Query 406 GATCAGTCGGTACAAGATGCAGTTTCATCAATTGGTGCTCGTATTTCTCCTACCTTGAGT 465
|||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 GATCAGCCTGTACAAGATGCAGTTTCATCAATTGGTGCTCGTATTTCTCCTACATTGAGT 480
Query 466 GAGGAGTGCACTCATGTGCTTCTTGAGCCACGTATGCAAGTGAATGAAGCTCTGGTCAAT 525
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 481 GAGGAGTGCACTCATGTGCTTCTTGAGCCACGTATGCAAGTGAATGAAGCTCTGATCAAT 540
Query 526 GCAATTTTAGCCAAAAAACCAATCATTTTGACAAATTGGGTGAAGCTTCTCGCAGAGAAA 585
|||||||||||||||||| |||||||||||||||| ||||| | ||||||||||||||||
Sbjct 541 GCAATTTTAGCCAAAAAAACAATCATTTTGACAAACTGGGTTATGCTTCTCGCAGAGAAA 600
Query 586 AGTATCTGCAGCGAATTTCCTGGATACAGCCAGTACAGACCATCAGTGATGGTTGAAGAA 645
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AGTATCTGCAGCGAAATTCCTGGATACAGCCAGTACAGACCATCAGTGATGGTTGAAGAA 660
Query 646 GCTTTGGTGGATGTACTAGAATTAAACGTCCGTGAAAAATGTCTAGAAAGATTTACCTTT 705
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 661 GCTTTGGTGGATGTACTAGAATTAAACGTCCGTGAAAAATGTCTAGAAGGATTTACCTTT 720
Query 706 GTGTTGGAACCACCAGACATGTACAGATTTGGTTGCAGCTTCCCATCTTTACTTAAAGTA 765
|| ||||||||| |||||| ||| |||||||||||||||||||||||||||||| |||||
Sbjct 721 GTCTTGGAACCAACAGACACGTATAGATTTGGTTGCAGCTTCCCATCTTTACTTGAAGTA 780
Query 766 TGTGGTGCAGAGACTGTTACCATTGCAGACGTTAGCTCCATGAGTCAGGATTCTCAGTAT 825
|||||||||||||| |||||||| | |||| ||||||||||||||||||||||||||| |
Sbjct 781 TGTGGTGCAGAGACCGTTACCATAGAAGACATTAGCTCCATGAGTCAGGATTCTCAGTTT 840
Query 826 GGAGAAATTAATCGCATGATATGTGTCATCCCAAAAAGTTCAGGAGACAAATTTGGCCGT 885
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 841 GGAGAGATTAATCGCATGATATGTGTCATCCCAAAAAGTGCAGGAGACAAATTTGGCCGT 900
Query 886 TTGAAGCATCTCAGTTTGTTATCTAGAGTGAACGAGATGGATTTAGTATGCGCTGTCTTT 945
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 901 TTCAAGCATCTCAGTTTGTTATCTAGAGTGAACGAGATGGATTTAGTATGCGCCGTCTTT 960
Query 946 TCCGGCAATCTACCTTCAACTTCACTGATACCACCTTCCGTTGTAATTTCATCCTCATGC 1005
||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 961 TCCGGAAATCTACCTTCGACTTCACTGATACCACCATCCGTTGTAATTTCATCCTCGTGC 1020
Query 1006 TCTACGGATGAGACAGTGGTAGCGGATTCTGATGCCGAAGAGGAAGAAACAACATCGTCT 1065
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1021 TCTACAGATGAGACAGTGGTAGCGGATTCTGAAGCCGAAGAGGAAGAAACAACATCGTCT 1080
Query 1066 GTTCATATGATTGATGCTACTGAAAAGGCAGAAACACCAGAGAAGCCTGCAGCTATTATA 1125
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||
Sbjct 1081 GTTCATATGATTGATGCTACTGAAAAGGCAGAAACGCCAGAGAAGCCTGCTGCTATTGTA 1140
Query 1126 ATAGAGGATAGTCCTGTTACGATATTGGAAGAAACTAT-GAATTTGAATGAGTTTAAAAG 1184
||||||||||| |||||||| ||||||||||||||| | ||||||||| |||||||||||
Sbjct 1141 ATAGAGGATAGCCCTGTTACTATATTGGAAGAAACT-TCGAATTTGAACGAGTTTAAAAG 1199
Query 1185 CGTTAACTTATTAGCAGATACTGAAAATAGAGGCCACATCAATGAAAAGAACTCAGGTGA 1244
||| ||||||||||| ||||| |||| |||||||||||| |||||||||||||| ||||
Sbjct 1200 CGTGAACTTATTAGCGGATACAGAAAGTAGAGGCCACATGGATGAAAAGAACTCAAGTGA 1259
Query 1245 TAGTGTGACAATCCGAAGGGATCGGAACGATGAGGCTGAAACTGGGAATTCGGAGATTAT 1304
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1260 TAGTGTGACAATCCGAAGGGATCGGAACGATGAGGCTGAAACTGGGAAATCGGAGATTAT 1319
Query 1305 ATACACTCAAGATCTTATCGTTAGGGACTTGCGGTCGACTAGAAAAGTTCAATCGACAGG 1364
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1320 ATACACTCAAGATCTTATTGTTAGGGACTTGCGATCGACTAGAAAAGTTCAATCGACAGG 1379
Query 1365 AGAGGAAGGAGTTGTGGACTTCAAGCGATTCAGAAAGGGAAATGTTATATGCGGAAACAG 1424
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1380 AGGGGAAGGAGTTGTGGACTTCAAGCGATTCAGAAAGGGAAATGTTACATGCGGAAACAG 1439
Query 1425 CTTCAGTAGCCTAATACCTTTTGCGAAGGATCCATACAAAGAATACGATAGCGGGGACGT 1484
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1440 CTTCAGTAGCCTAATACCTTTTGCGAAGGATCCATACAAAGAATACGATAGCTGGGACGT 1499
Query 1485 GACAGATTTTATGAAAGAAGAGAAGAAAAGGAAGCAGATGGAAGCCATTGCAGAGGACTT 1544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 GACAGATTTTATGAAAGAAGAGAAGAAAAGGAAGCAGATGGAAGCCATTGCAGAGGACTT 1559
Query 1545 GTTTAACACTGAAAAGGCTAGAAAGCGTGGAACGGCTGGTTCCATTCGCGGGTTTCTCAC 1604
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1560 GTTTAAAACTGAAAAGGCTAGAAAGCGTGGAACGGCTGGTTCCATTCGCGGGTTTCTCTC 1619
Query 1605 TCGAAGTTGAGGTTTT 1620
| ||||||||||||||
Sbjct 1620 TGGAAGTTGAGGTTTT 1635
Score = 137 bits (74), Expect = 3e-31
Identities = 85/90 (94%), Gaps = 2/90 (2%)
Strand=Plus/Plus
Query 1620 TGGAAAAACGCATGATTCTGGATCAGTGGATCACTAGGAACTAAACAAAATCTTGTCttt 1679
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 TGGAAGAACGCATGATTCTGGATCAGTGGATCACTAGGAACTAAACAAAATCTTGTCTTT 1732
Query 1680 t-ttttC-GTTCTTCATGAGTTAAACAATG 1707
| |||| ||||||||||||||||| ||||
Sbjct 1733 TATTTTTTGTTCTTCATGAGTTAAAAAATG 1762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84387116145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5