BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477509
Length=1403
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02690.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 1986 0.0
> AT3G02690.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr3:579586-581611 FORWARD LENGTH=1458
Length=1458
Score = 1986 bits (1075), Expect = 0.0
Identities = 1247/1326 (94%), Gaps = 28/1326 (2%)
Strand=Plus/Plus
Query 1 TTGTTCTAAGGACAAGCAACAATGGAATGGCCATGGTCGGCCATCgctgctgcttcttcc 60
|||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 21 TTGTTCTAAGTACAAGCAACAATGGAGTGGCCATGGTCGGCCATCGCTGCTTCTTCTTCC 80
Query 61 tcttcttctagttgcttctttgcttctcctaactcttgcttgtctACTACTAGACAAACG 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 81 TCTTCTTCTAGTTGCTTCTTTGCTTCTCCTAACTCTTGCTTGTCTATTACTAGACGAACG 140
Query 121 AATTCGAGCTGTGCTAACAAATATCCATCGAACATTTTGGTTAAATCCTTGCGACATAGC 180
|||| |||||||| | || | | || || ||||||||||||||| || |||
Sbjct 141 AATTTGAGCTGTG-T------TA---A-C--AC--TTCGGTTAAATCCTTGCGCCACAGC 185
Query 181 AGATTCGACTCGAAGCATATTCTCGTTTCGATCTCTAAACGTCGAATCTATGGAGATTCC 240
||||||||||||||||||| || ||| | ||||||||||||| |||||||||||
Sbjct 186 AGATTCGACTCGAAGCATA--ATC---TCG---T-TAAACGTCGAATCAATGGAGATTCC 236
Query 241 GTTGTTCGGAGAAGCACCGCTAGCAATAAAAGCACCGAGGAGACTGAACCATCGTCG--- 297
|||||||||||||||||| | |||||||| ||||| |||||||| ||| ||||||||
Sbjct 237 GTTGTTCGGAGAAGCACCACAAGCAATAATAGCACTGAGGAGACAGAATCATCGTCGTCT 296
Query 298 TCTTCGTCTGTAGATTGCGTTGGAATGGGATCAGACGTGGAGTGCGTCTACAACGGAGAA 357
||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| |||
Sbjct 297 TCTTCGTCTGTAGATTGCGTTGGAATGGGATCAGACGTGGAATGCGTCAATAACGGGGAA 356
Query 358 GATGAGGAGAATCGGAGCTCCGGAATCTTGAACGGCGGAGAAGGAACGTTGCTTGAATGG 417
|||||||||||||||||||| |||||||||| |||||| ||||||||||| |||||||||
Sbjct 357 GATGAGGAGAATCGGAGCTCTGGAATCTTGAGCGGCGGTGAAGGAACGTTTCTTGAATGG 416
Query 418 ACGGTTCTGATTTCACCCTTCTTTTTCTGGGGAACGGCGATGGTGGCGATGAAGGAAGTG 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 ACGGTTCTGATTTCACCCTTCTTTTTCTGGGGAACGGCGATGGTGGCGATGAAGGAAGTG 476
Query 478 TTGCCCATTACTGGTCCTTTCTTCGTGGCCGCGTTTCGGTTAATTCCGGCTGGTTTGTTG 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TTGCCCATTACTGGTCCTTTCTTCGTGGCCGCGTTTCGGTTAATTCCGGCTGGTTTGTTG 536
Query 538 CTTGTCGCGTTTGCAGTTTACAAAGGCAGACCTTTGCCTAAAGGAATCAATGCTTGGCTC 597
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 537 CTTGTCGCCTTTGCAGTTTACAAAGGCAGACCTTTGCCTGAAGGAATCAATGCTTGGTTC 596
Query 598 TCTATTGCTCTCTTTGCTCTTGTGGACGCCACTTGTTTCCAGGGATTTCTTGCTCAAGGG 657
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TCTATCGCTCTCTTTGCTCTTGTGGACGCCACTTGTTTCCAGGGATTTCTTGCTCAAGGG 656
Query 658 TTACAGAGAACTTCTGCTGGTTTAGGAAGTGTTATAATTGATTCTCAGCCACTGACTGTT 717
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 657 TTACAGAGAACTTCTGCTGGTTTAGGAAGTGTCATAATTGATTCTCAGCCACTGACTGTA 716
Query 718 GCTGTATTAGCATCTTTCTTGTTTGGTGAGTCCATTGGAATAGTGAGAGCTGGAGGTTTG 777
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 717 GCTGTGTTAGCATCTTTCTTGTTTGGTGAGTCAATTGGAATAGTGAGAGCTGGAGGTTTG 776
Query 778 CTTCTTGGTGTTGCTGGACTTTTGCTTCTTGAGGTTCCATCAGTTACTTCAGATGGTAAT 837
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 777 CTTCTTGGTGTTGCTGGACTTTTGCTTCTTGAGGTTCCATCAGTAACTTCAGATGGTAAT 836
Query 838 AACTTTTCCTTGTGGGGAAGTGGAGAGTGGTGGATGCTTCTTGCAGCTCAGAGCATGGCT 897
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 837 AATTTTTCCTTGTGGGGAAGTGGAGAATGGTGGATGCTTCTTGCAGCTCAGAGCATGGCT 896
Query 898 ATTGGCACTGTGATGGTCCGATGGGTCTCAAAATACTCAGATCCAATTATGGCTACCGGT 957
||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 897 ATTGGCACTGTCATGGTTCGATGGGTCTCAAAATACTCAGATCCAATTATGGCAACCGGT 956
Query 958 TGGCATATGGTAATCGGTGGCCTTCCTCTTTTGGCGATTTCTGTTATAAACCATGACCCG 1017
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 957 TGGCATATGGTTATCGGTGGCCTTCCTCTTTTGGCGATTTCTGTTATAAATCATGACCCG 1016
Query 1018 GTTTTTATTGGCAGTCTTCAAGAGCTATCCACAAATGATGTTATAGCACTTCTCTACACA 1077
||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1017 GTTTTTAATGGTAGTCTTCAAGATCTATCCACAAATGATGTTATAGCACTTCTCTACACA 1076
Query 1078 TCCATTTTTGGCAGCGCAGTTAGCTACGGTGTTTACTTCTACAGCGCTACTAAAGGAAGC 1137
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1077 TCCATTTTTGGCAGCGCAGTTAGCTACGGTGTTTACTTCTATAGCGCTACTAAAGGAAGC 1136
Query 1138 CTAACTAAACTCAGCTCACTCACCTTCCTGACACCAATGTTTGCATCAATCTTTGGATAT 1197
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1137 CTAACTAAACTCAGCTCACTCACCTTCTTGACACCAATGTTTGCATCAATCTTTGGGTAT 1196
Query 1198 CTGTACCTCAATGAGACTTTCTCCTCATTGCAACTGGTGGGAGCAGCAGTCACTTTGGTT 1257
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1197 CTGTACCTCAATGAGACTTTCTCCTCATTGCAACTGGTCGGAGCAGCAGTGACTTTGGTC 1256
Query 1258 GCTATATACTTGGTGAACTTTCCCGAAGGCAACGACTGAGACACTCTTTCAGTTCTTACT 1317
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1257 GCTATATACTTGGTGAACTTTCCCGAAGGCAACGACTGAGACACTCTTTGAGTTCTTACT 1316
Query 1318 T-CACT 1322
| ||||
Sbjct 1317 TACACT 1322
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69126150465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5