BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477510
Length=960
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02700.1 | Symbols: | NC domain-containing protein-related ... 1378 0.0
> AT3G02700.1 | Symbols: | NC domain-containing protein-related
| chr3:581541-582949 REVERSE LENGTH=1081
Length=1081
Score = 1378 bits (746), Expect = 0.0
Identities = 895/963 (93%), Gaps = 25/963 (3%)
Strand=Plus/Plus
Query 1 AGAAGATGGGTTTCCTTTCCAATAAAATCTCCAGAGACGATGTGAAACCAGGCGATCACA 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 AGAAGATGGGATTCCTTTCCAATAAAATCTCCAGAGACGATGTGAAACCAGGCGATCACA 191
Query 61 TCTATTCATGGCGTCAGGCCTATATTTACGCTCATCACGGAATCTATGTAGGTGATGGAC 120
|||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 192 TCTATTCATGGCGTCAAGCCTACATTTACGCTCATCACGGAATCTATGTAGGTAATGGAC 251
Query 121 AAGTCAACCATTTTACTCGTGGTGATGGTCAAGAGACTGGAACTGGGACTTTCTTGGACA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 AAGTCAACCATTTTACTCGTGGTGATGGTCAAGAGACTGGAACTGGGACTTTCTTGGACA 311
Query 181 ATATCATTGTTAGTTCATCTCATAATCATGGAGACAACCCATGTCCTAATTGCGGAGATC 240
| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 312 ACATCATTGTTAGTTCATCTCATAATCATGGAGACAACCCATGTCCTGATTGTGGAGATC 371
Query 241 GATCCAATCTTGGCGGTGTCATCTCTTCCTGCCTTGAATGTTTCCTTGCAGGAGGTGATC 300
||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 372 GATCCAATCTTGGCGGTGTTATATCTTCCTGCCTTGAATGTTTCCTTGCCGGAGGTGATC 431
Query 301 TCTATGTCTTTGAGTACAGTGTTTCCCCTGCTATTTTTCTTGCCAAACCTCGAGGCGGCG 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 432 TCTATGTCTTTGAGTACAGTGTTTCCCCTGCTATCTTTCTTGCCAAACCTCGAGGCGGCG 491
Query 361 TATGCACAATAGCATCTTCAGATCCTCCTGAAGAAGTCATTTACCGTGCAAACTTTCTCT 420
||||||| |||||||||||||||||||| ||||||||||| || || ||||| |||||||
Sbjct 492 TATGCACTATAGCATCTTCAGATCCTCCAGAAGAAGTCATCTATCGAGCAAATTTTCTCT 551
Query 421 TGCAAAATGGTTTTGGTGTGTACAATGTTTTTAAGAACAACTGTGAAGATTTTGCCATCT 480
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 552 TGCAAAATGGTTTTGGTGTGTACAATGTCTTCAAGAACAACTGTGAAGATTTTGCCATCT 611
Query 481 ATTGTAAAACTGGTTTGCTAGTGGCAAACACCGACGTGGGGAGGAGCGGTCAAGCCGCTT 540
|||| ||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 612 ATTGCAAAACGGGTTTGCTAGTGGCAAACACCGACGTGGGAAGGAGTGGTCAAGCTGCTT 671
Query 541 CCATTGTTGCAGCTGCCAGTGTTCTTCTTTCTTCGCCACTCAGGTTTGTAGCAGGTTTTG 600
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 672 CAATTGTTGCAGCTGCCAGTGTTCTTCTTTCTTCACCACTCAGGTTTGTAGCAGGTTTTG 731
Query 601 GTGGTTTGGCTGTTGCTGGATATGGCATGTACTGCACCAGTCGCCTGGTTTCAGATATAG 660
||||||||||||| ||||| |||||||||||||||||||||||| | |||||||||||||
Sbjct 732 GTGGTTTGGCTGTGGCTGGCTATGGCATGTACTGCACCAGTCGCTTAGTTTCAGATATAG 791
Query 661 GCATGCGATGGGATGTGAGCAAGGTGCCTGTTGAGAGACTAGTTGCTGATGTGGAGAGAC 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 792 GCATGCGATGGGATGTGAGCAAGGTGCCTGTTGAGAGACTAGTTGCTGATGTGG-----C 846
Query 721 TAGTTGCTGATGTGGCTGATAAGTCGGAGATGGAAGCTAAATCAGAAGA-GAAGAAGACC 779
| | | | |||| | || | | ||||||||||| ||||||| || ||||||
Sbjct 847 T--T-G-T-ATGTCG--GA-----C--A--TGGAAGCTAAACCAGAAGATGA-GAAGACT 889
Query 780 ACT-AATCCAAAACTGCTCACACCTGTATTACCATAATGGTTGATCTCTGATTGTAAATG 838
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 890 ACTTAATCCAAAACTGCTCACACCTGTATTACCATACTGGTTGATCTCTGATTGTAAATG 949
Query 839 TTGTGGAGGAAGTAAGAGAATCTGCTTCTGCTGTATCGAGTTGTGCAACATTTGTT-ATC 897
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 950 TTGTGGCGGAAGTAAGAGAATCTGCTTCTGCTGTATCGTGTTGTGCAACATTTGTTTATG 1009
Query 898 TTATTAAAAAACTTCGCTTTTGATTAACACTGAACTATGATGATTCATTTTACTATATAC 957
| |||| |||||| ||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1010 TAATTACGAAACTTGGCTTTTGATTAACACTGAACTATGATGCTTCATTTTATTATATAC 1069
Query 958 AAT 960
|||
Sbjct 1070 AAT 1072
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46968927445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5