BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477511
Length=1699
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02710.1 | Symbols: | ARM repeat superfamily protein | chr3... 2748 0.0
> AT3G02710.1 | Symbols: | ARM repeat superfamily protein | chr3:583113-585948
FORWARD LENGTH=1829
Length=1829
Score = 2748 bits (1488), Expect = 0.0
Identities = 1633/1703 (96%), Gaps = 10/1703 (1%)
Strand=Plus/Plus
Query 1 TATTTCAGCCCTTAAACCAAAAATCTTAGTCTGAGACGGAAAGAGAGAGAGTATAGCCAT 60
||||||| |||||||||||||||||||||| | |||||| || |||||||||||||||||
Sbjct 16 TATTTCATCCCTTAAACCAAAAATCTTAGTTTCAGACGG-AA-AGAGAGAGTATAGCCAT 73
Query 61 GGAAGTCTCAAATCAGACCAGAAAACGGAAAGCAATCGACGCCGGACATGGCTCGCCGCC 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 74 GGAAGTCTCAAATCAGACCAGAAAACGGAAAGCAATCGACGCCGGACATGGCTCGCAGCC 133
Query 121 GCCGGCGTATCGAGGCTCAGATTCTGTAGATCTTTCTCTCCTTGAAGCACTTGAGAAGTC 180
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 134 GACGGCGTATCGAGGCTCAGATGGTGTAGATCTTTCTCTCCTTGAAGCACTTGAGAAGTC 193
Query 181 TTCGCATCATGCAGTAGAAGCGCTTGATCTTAAAACCCTAAAAAAGCTTGTCCTCTCCTT 240
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 TTCGCATAATGGAGTAGAAGCGCTTGATCTTAAAACCCTAAAAAAGCTTGTCCTCTCCTT 253
Query 241 CGAGCGGCGTCTTAGGGACAACATAGCTGCTCGTCTCAAGTATGTGGAGAATCCAGAAAA 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 CGAGCGGCGTCTTAGAGACAACATAGCTGCTCGTCTCAAGTATGTGGAGAATCCAGAAAA 313
Query 301 GTTCGCTGACTCAGAGGTTGACCTACACGACGATCTTCAGAAGCTAAAGGTTCTCGCTGG 360
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 314 GTTCGCTGACTCAGAGGTTGACCTACACGACGATCTTCAGAAGCTCAAGGTGCTCGCTGG 373
Query 361 AGCTCCGGAGCTTTACCCTGACCTTGTTGCTTCCAATTCGGTTCCTTCGATTGTTAACCT 420
||||||||| |||||||| |||||||||||||||||| |||||||||||||||| || ||
Sbjct 374 AGCTCCGGAACTTTACCCGGACCTTGTTGCTTCCAATACGGTTCCTTCGATTGTCAATCT 433
Query 421 CCTCTCCCATGATAACTCCGACATCGCCAACGATGTTGTTCAGCTTCTTCAGGATCTGAC 480
|||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 434 CCTCTCTCATGAAAACTCCGATATCGCCAACGATGTTGTTCAGCTTCTTCAGGATCTGAC 493
Query 481 TGACGAAGATGCATTAGAGGATAACGATGAGCCGGCGCGTGTGTTAGTCGACGCAC-TGG 539
|||||||||||| |||||||||||||||||||| |||||||||||||||||||| | |||
Sbjct 494 TGACGAAGATGCCTTAGAGGATAACGATGAGCCTGCGCGTGTGTTAGTCGACGC-CTTGG 552
Query 540 TTGAAAACAATGTGCTCGAGCTCTTGGTTCAGAATATGAATCGTTTGTCTGAGGCAGACC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 553 TTGAAAACAATGTGCTCGAGCTCTTGGTTCAGAATATGAATCGTTTGTCTGAGGCTGACC 612
Query 600 CAGACGAAGCTACGGCTATATACGCAACTTTGACAGTGATTGAGAATTTGGTGGAAGTAA 659
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 613 CTGACGAAGCTACGGCTATATACGCAACTTTGACGGTGATTGAGAATTTGGTGGAAGTAA 672
Query 660 AGCCGGCTGTTGCTGAATTGGTGTGTGAACGAACGAAACTATTGCGGTGGCTTCTGACGA 719
|||||||||||||| |||||||||||||| | ||||| ||||||||||||||||||||||
Sbjct 673 AGCCGGCTGTTGCTCAATTGGTGTGTGAAAGGACGAAGCTATTGCGGTGGCTTCTGACGA 732
Query 720 AGATTAAGGTGAGGGAATTCGAAGGAATCAAGCAGTACGCGTCTGAGATTCTTGCAATTC 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 AGATTAAGGTGAGGGAATTCGAAGGAATCAAGCAGTACGCGTCTGAGATTCTTGCAATTC 792
Query 780 TGCTGCAAAACAGCT-CGGCGAATCAGAAACGGCTAGGTCAGATGAATGGTGTAGACGCT 838
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 TGCTGCAAAACAG-TACGGCGAATCAGAAACGGCTAGGTCAGATGAATGGTGTAGACGCT 851
Query 839 GTGCTTGAAGGTGTGGCGATGTATAAGTCGAAGGATCCTAAAACTCCTGATGAGGAAGAG 898
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 852 GTGCTTGAAGGTGTGGCGATGTATAAGTCAAAGGATCCTAAAACTCCTGATGAGGAAGAG 911
Query 899 ATGTTAGAGAATCTATTTGATTGTTTGTGTTGCCTCTTGATGCCATTGGAGAACAAGGAG 958
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 ATGTTAGAGAATCTGTTTGATTGTTTGTGTTGCCTCTTGATGCCATTGGAGAACAAGGAG 971
Query 959 AGGTTTGTGAATGCGGAAGGTGTTGAGCTGATGATTATTATCATGAAGCAGAAGAAATAT 1018
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 972 AGGTTTGTGAATGCGGAAGGTGTAGAGCTGATGATTATTATCATGAAACAGAAGAAATAT 1031
Query 1019 GCTTACGGGTCTGCAATTCGAGCTCTAGACTTCGCCATGACCAATTATCCACCAGCTTGT 1078
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1032 GCTTACGGGTCTGCTATTCGAGCTCTAGACTTCGCCATGACCAATTATCCACCAGCATGT 1091
Query 1079 GAGAGGTTTGTGGATGTTATGGGGCTGAAAACAGCATTTGCTGCTTTCATGGGTAAGATT 1138
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1092 GAGAGGTTTGTGGATGTTATGGGACTGAAAACAGCATTTGCTGCTTTCATGGGTAAGATT 1151
Query 1139 CCGCTAAACAAGAGGATCAAAAGGGAGCGGTATAAAGAGGAGCTAGAGGAGCGGGTTATT 1198
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1152 CCGCTAAACAAGAGAATCAAAAGGGAGCGGTATAAGGAGGAGCTAGAGGAGCGGGTTATT 1211
Query 1199 TCCCTGATTGCGTCATTATTTGCTGGGATTTTAAGGGGTTCTAGGAGAGATCGTTTATTA 1258
||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 1212 TCCCTGATTGCGTCATTATTTGCTGGGATATTAAGGGGTTCTAGGAGAGATCGATTGTTG 1271
Query 1259 AGTAAGTTTGTGGAGAATGAGTTTGAGAAGATTGACCGGCTCATGGAATTATATTTCAGA 1318
||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1272 AGTAAATTCGTGGAGAATGAATTTGAGAAGATTGACCGGCTCATGGAATTATATTTGAGA 1331
Query 1319 TACTCTGATAGGGTTAGATCAGAGGCGGAGAGGTTAGACCAGCTTGAGCTTGATGACCTT 1378
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1332 TACTCTGATAGGGTTAGATCAGAGGCGGAAAGGTTAGACCAGCTTGAGCTTGATGACCTT 1391
Query 1379 GAGTTGGATGAAGATGAGAAATATAACCGGAAGCTAGAATCAGGGCTCTACAGTCTTCAG 1438
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1392 GAGTTGGATGAAGATGAGAAATATAATCGGAAGCTAGAATCAGGTCTCTACAGTCTTCAG 1451
Query 1439 CTTGTTGCTGTTATCCTGGGCCATATTTGGTGTTCTGAGCATTCTGGAATGAGAGCGCGG 1498
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1452 CTTGTTGCTGTTATCCTGGGGCATATTTGGTGTTCTGAGCATTCTGGAATGAGAGCGCGG 1511
Query 1499 ATCGAGCTGCTACTGAAGCAACAGAAGCTTAGTAAAACCGATGTCAAGCAGATTCTTCAG 1558
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1512 GTGGAGCTGCTACTGAAGCAACAGAAGCTTAGTAAAACCGATGTCAAGCAGATTCTTCAG 1571
Query 1559 GAATATCACGACAACATTGGAGATCTTGATGGACCAGAGGAGAAGGAACGAGGACAGGCA 1618
|| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1572 GAGTATCACGACAACATTGGAGATCTTGATGGAGCAGAGGAGAAGGAACGAGGACAGGCG 1631
Query 1619 AGAATTCAGTTGTTCATATCGGCAATGTGATTTAGAGAAAGAAAGAAAGAACTTGGAGAT 1678
|||||||||||||||||||| || ||||||||||||||| ||||||||||| || || |
Sbjct 1632 AGAATTCAGTTGTTCATATCAGCGATGTGATTTAGAGAAGGAAAGAAAGAAGTTAGA-A- 1689
Query 1679 ATCG--CAAATGGCTTGGTATTA 1699
|||| |||||||||||||||||
Sbjct 1690 ATCGTGCAAATGGCTTGGTATTA 1712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83985511785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5