BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477513
Length=598
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02730.1 | Symbols: TRXF1, ATF1 | thioredoxin F-type 1 | chr... 861 0.0
> AT3G02730.1 | Symbols: TRXF1, ATF1 | thioredoxin F-type 1 | chr3:588408-589685
REVERSE LENGTH=793
Length=793
Score = 861 bits (466), Expect = 0.0
Identities = 543/580 (94%), Gaps = 5/580 (1%)
Strand=Plus/Plus
Query 21 TCTCTCGTCATCGTCACTCTGTTGAATT-CTCCAAACAATGCCTCTCTCTCTCCGTCTTT 79
||| ||||||||||| |||||||||||| || |||||||||||||| |||||||||||||
Sbjct 59 TCT-TCGTCATCGTCTCTCTGTTGAATTCCT-CAAACAATGCCTCTTTCTCTCCGTCTTT 116
Query 80 CTCCTTCTCCGACGGCTTTAGCTCCGACCACCGGAGGATTTGGTCCATCGCGGAAACAGT 139
||||||| |||||||||||| ||||||| ||||||||||||||||||||| |||||||||
Sbjct 117 CTCCTTCGCCGACGGCTTTATCTCCGACTACCGGAGGATTTGGTCCATCGAGGAAACAGT 176
Query 140 GCCGGATTCCTTTCTCCGGCGTCGCGACGACGAAGATTGGTTTCTGTTCTTTGGATAATG 199
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 177 GCCGGATTCCTTACTCCGGCGTCCCGACGACGAAGATTGGTTTCTGTTCTTTGGATTCTA 236
Query 200 GGAAAAGTGGAGATTCATCTGTGGTTAGATGTAGCTTAGAGACCGTGAATGTCAGTGTTG 259
||||||| |||||||| ||||| ||||| ||||||||||| ||||| |||||||||||||
Sbjct 237 GGAAAAGAGGAGATTCCTCTGTTGTTAGGTGTAGCTTAGAAACCGTTAATGTCAGTGTTG 296
Query 260 GTCAGGTGACGGAGGTCGATAAGGACACGTTCTGGCCCATCGTTAAAGCCGCCGGTGAAA 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GTCAGGTGACGGAGGTCGATAAGGACACGTTCTGGCCCATCGTTAAAGCCGCCGGTGAAA 356
Query 320 AGATTGTCGTACTTGACATGTACACTCAATGGTGTGGTCCATGTAAAGTGATTGCTCCTA 379
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 357 AGCTTGTCGTACTTGACATGTACACTCAATGGTGTGGTCCATGTAAAGTGATTGCCCCTA 416
Query 380 AATACAAAGCTTTATCAGAGAAGTACGAGGACGTTGTGTTTCTAAAGCTTGACTGCAAAC 439
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 417 AATACAAAGCTTTATCAGAGAAGTACGACGACGTTGTGTTTCTAAAGCTTGACTGCAATC 476
Query 440 CTGATAACCGGCCATTGGCAAAGGAGCTAGGAATAAGAGTGGTTCCAACTTTCAAGATAT 499
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 477 CAGATAACCGGCCATTGGCAAAAGAGCTAGGAATAAGAGTGGTTCCAACTTTCAAGATTT 536
Query 500 TGAAGGACAACAAGGTCGTCAAGGAAGTGACCGGTGCGAAATACGATGATCTGGTTGCAG 559
||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 537 TGAAGGATAACAAGGTTGTCAAGGAAGTGACCGGTGCAAAATACGATGATCTGGTTGCAG 596
Query 560 CGATCGAAACAGCAAGGTCTGTTGGTTC-GGCATAAACCA 598
|||| |||||||| ||||||| || ||| || || |||||
Sbjct 597 CGATTGAAACAGCGAGGTCTGCTGCTTCCGG-ATGAACCA 635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28784166231
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5