BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477514
Length=1644
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02740.1 | Symbols: | Eukaryotic aspartyl protease family p... 2540 0.0
> AT3G02740.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr3:590448-593186 FORWARD LENGTH=1677
Length=1677
Score = 2540 bits (1375), Expect = 0.0
Identities = 1574/1666 (94%), Gaps = 29/1666 (2%)
Strand=Plus/Plus
Query 1 CCTAAATCTTACTCCACCGCCAAACTATActtttctttcttttg-------------ctt 47
|||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 2 CCTAAATCGTACTCCACCGCCAAACTATACTTTTCTTTCTTTTGCTTTTTTTCTTCTCTT 61
Query 48 c--tttttt-G---GG-TCTCTCAACTAATTTACTTAGGGATATCTCCGGTAATGGATCT 100
| |||||| | || | |||||||||| ||| ||||||||||||||||| ||||||||
Sbjct 62 CATTTTTTTCGTTTGGATTTCTCAACTAACTTAGTTAGGGATATCTCCGGTCATGGATCT 121
Query 101 CAGGCGGAGACAGTGGTTCTTGTTGCCGATTTTACTGTCGGCGGCGTTGCTGATTGAGCT 160
||||||||||||||||||||||| | | ||||| ||||||||||||||||||||||| |
Sbjct 122 CAGGCGGAGACAGTGGTTCTTGTCGGCTATTTTGCTGTCGGCGGCGTTGCTGATTGACCC 181
Query 161 GCAGTTATCGACGGCGGCGACGGCTCCGGAGAATTTGGTATTTCAAGTTCGAAGCAAGTT 220
||| || |||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 182 GCAATTCTCGACGGCGGCGACGGCTTCGGAGAATTTGGTATTTGAAGTTCGAAGCAAGTT 241
Query 221 CGCCGGAAAAAGAGAAAAAGATCTTGGAGCTCTCAGAGCTCACGACGTCCACCGTCACTC 280
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 CGCCGGAAAAAGAGTAAAAGATCTTGGAGCTCTCAGAGCTCACGACGTCCACCGTCACTC 301
Query 281 AAGACTCCTCTCCGCCATCGATCTTCCTCTCGGCGGCGATAGCCAGCCTGAGTCTATTGG 340
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 302 AAGACTCCTCTCCGCCATCGATATTCCTCTCGGCGGCGATAGCCAGCCTGAGTCTATTGG 361
Query 341 TTTATACTTCGCCAAAATTGGACTCGGAACTCCATCAAGAGACTTTCATGTGCAAGTTGA 400
|||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 362 TTTATACTTCGCTAAAATCGGACTCGGAACTCCATCAAGAGACTTCCATGTTCAAGTTGA 421
Query 401 TACAGGAAGTGATATCTTGTGGGTGAATTGTGCTGGTTGCATTAGATGTCCTAGGAAGAG 460
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 422 TACAGGAAGTGATATCTTATGGGTGAATTGTGCTGGTTGCATCAGATGTCCTAGGAAAAG 481
Query 461 TGATCTGGTAGAGCTGACACCTTATGATGCCGATGCTTCGTCCACTGCAAAATCTGTTTC 520
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 482 TGATCTGGTAGAGCTGACACCTTATGATGTGGATGCTTCGTCCACTGCAAAATCTGTTTC 541
Query 521 GTGCAGTGACAACTTTTGCTCTTACGTTAACCAAAGATCTGAGTGTCACTCAGGTTCTAC 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 GTGCAGTGACAACTTTTGCTCTTACGTTAACCAAAGATCTGAGTGTCACTCAGGTTCTAC 601
Query 581 ATGTCAATATGTTATTCTGTATGGAGATGGGAGCTCAACTAATGGATACTTGGTGAGAGA 640
||||| ||||||||| ||||||| |||||||| |||||||||||||||||||||| |||
Sbjct 602 TTGTCAGTATGTTATTATGTATGGCGATGGGAGTTCAACTAATGGATACTTGGTGAAAGA 661
Query 641 TGTTGTACATTTGGATTTAGTTACTGGAAATCGTCAAACCGGTTCCACCAACGGAACTAT 700
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 TGTTGTTCATTTGGATTTAGTTACTGGAAATCGTCAAACCGGTTCCACCAACGGAACTAT 721
Query 701 TATCTTCGGATGTGGGTCTAAACAGTCTGGTCAGCTCGGAGAATCCCAAGCTGCGGTTGA 760
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 722 TATCTTCGGATGTGGGTCTAAACAGTCTGGTCAGCTCGGAGAGTCACAAGCTGCGGTTGA 781
Query 761 TGGGATAATGGGATTTGGACAATCGAATTCATCGTTTATATCGCAGCTAGCTTCACAAGG 820
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 782 TGGGATAATGGGATTTGGACAATCAAATTCATCGTTTATATCGCAGCTAGCTTCACAAGG 841
Query 821 AAAGGTCAAAAGGTCTTTTGCACATTGTTTGGATAATAACAATGGAGGCGGTATATTCGC 880
||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct 842 AAAGGTCAAAAGGTCTTTTGCGCATTGTTTGGATAACAACAATGGAGGTGGTATATTCGC 901
Query 881 CATTGGAGAGGTCGTGTCACCGAAAGTAAAGACTACTCCTATGCTCTCTAAATCAGCTCA 940
||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 902 CATTGGAGAAGTCGTGTCGCCGAAAGTAAAGACTACACCTATGCTCTCTAAATCAGCTCA 961
Query 941 CTATAGTGTCAACCTCAATGCAATTGAAGTTGGTAATTCAGTTTTACAACTTTCTTCGGA 1000
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 962 CTATAGTGTCAACCTCAATGCAATTGAAGTTGGTAATTCAGTTTTAGAACTTTCTTCGAA 1021
Query 1001 TGCTTTTGATTCGGGAGATGACAAAGGAGTTATTATTGATAGTGGTACAACTCTGGTGTA 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 TGCTTTTGATTCGGGAGATGACAAAGGAGTTATTATTGATAGTGGTACAACTCTGGTGTA 1081
Query 1061 TCTTCCTGATGCTGTTTATAACCCGTTAATGAATCAGATTTTGGCTTCACAT-CAGGAGC 1119
|||||||||||||||||||||||||||| ||||| |||| |||||||||||| || ||||
Sbjct 1082 TCTTCCTGATGCTGTTTATAACCCGTTACTGAATGAGATATTGGCTTCACATCCA-GAGC 1140
Query 1120 TTACTTTGCATACAGTTCAAGATTCGTTTACTTGTTTCCATTATACAGACAAATTAGATC 1179
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1141 TTACTTTGCATACAGTTCAAGAGTCGTTTACTTGTTTCCATTATACAGACAAATTAGATC 1200
Query 1180 GGTTCCCAACTGTCACTTTTCAGTTCGACAAGTCTGTTTCATTGGCGGTTTATCCTCGGG 1239
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1201 GGTTCCCAACTGTCACTTTTCAGTTTGACAAGTCTGTTTCATTGGCGGTTTATCCTCGGG 1260
Query 1240 AATATCTATTCCAAGTTCGAGAAGACACATGGTGTTTTGGCTGGCAAAACGGTGGATTGC 1299
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1261 AATATCTATTCCAAGTTCGAGAAGACACATGGTGTTTTGGCTGGCAAAATGGTGGATTGC 1320
Query 1300 AGACTAAAGGAGGAGCATCATTAACAATTCTTGGAGACATGGCCCTCTCTAACAAGTTAG 1359
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 AGACTAAAGGAGGAGCTTCATTAACAATTCTTGGAGACATGGCCCTCTCTAACAAGTTAG 1380
Query 1360 TTGTCTACGATATCGAAAACCAAGTCATTGGATGGACCAATCACAACTGCTCAGGAGGAA 1419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 TTGTCTACGATATCGAAAACCAAGTCATTGGATGGACCAATCACAACTGCTCAGGAGGAA 1440
Query 1420 TACAAGTCAAGGATGAAGAAACTGGAGCAATCTACACTGTTGGTGCACACAACCTCTCAT 1479
||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||
Sbjct 1441 TACAAGTCAAGGATGAAGAAAGTGGAGCAATCTATACTGTTGGTGCTCACAACCTCTCAT 1500
Query 1480 GGTCGTCTTCTTTAGCTATTACAAAACTTCTTACAATTGTTTCTTTCTTAATTCCTTTCT 1539
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1501 GGTCGTCTTCTTTAGCTATTACAAAACTTCTTACACTTGTTTCTCTCTTAATTCCTTTCT 1560
Query 1540 TCTGCAACATTGCTTTATAGTTTCAGATAAAA-CCCTCTTGGGACAAAGTATATTCCTAC 1598
|||| ||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| |
Sbjct 1561 TCTGTAACGTTGCTTTATAGTTTCAGATAAAAACCCTCTTGGGACAAAGTTTATTCCTTC 1620
Query 1599 TGTTGTTAGTTGTTACCATTAAAGGATCTGATTCCCATTTGTTGAA 1644
||||||| | | | ||||||||| ||||||||||||| |||||
Sbjct 1621 TGTTGTT--TA-T--C-ATTAAAGGAACTGATTCCCATTTCTTGAA 1660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81224481810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5