BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477517
Length=2696
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02750.3 | Symbols: | Protein phosphatase 2C family protein... 1748 0.0
> AT3G02750.3 | Symbols: | Protein phosphatase 2C family protein
| chr3:593207-595755 REVERSE LENGTH=2276
Length=2276
Score = 1748 bits (946), Expect = 0.0
Identities = 1043/1087 (96%), Gaps = 17/1087 (2%)
Strand=Plus/Plus
Query 1620 CAGCTGAGGCAGAGAGAATAAGAAAGTGTCGAGGACGGGTGTTTGCACTTAGAGATGAAC 1679
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1194 CAGCTGAGGCAGAGAGAATAAGAAAGTGTCGAGGACGAGTGTTTGCTCTTAGAGATGAAC 1253
Query 1680 CTGAAGTTTGTAGAGTTTGGCTGCCAAATTGTGACTCACCTGGACTTGCTATGGCACGTG 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 CTGAAGTTTGTAGAGTTTGGCTGCCAAATTGTGACTCACCTGGACTTGCTATGGCACGTG 1313
Query 1740 CTTTTGGAGACTTTTGCCTTAAAGATTTTGGCCTAATCTCTGTGCCTGATGTATCTTTCC 1799
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 CTTTTGGTGACTTTTGCCTTAAAGATTTTGGCCTAATCTCTGTGCCTGATGTATCTTTCC 1373
Query 1800 GTC-GATTAACCGAAAAAGATGAGTTTATAGTGTTGGCTACAGATGGGATTTGGGATGTT 1858
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 GTCAG-TTAACCGAAAAAGATGAGTTTATAGTGTTGGCTACAGATGGGATTTGGGATGTT 1432
Query 1859 CTCTCAAATGAAGATGTAGTGGCGATTGTAGCTTCAGCTCCATCGCGCTCCTCTGCAGCT 1918
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 CTCTCAAATGAAGATGTAGTGGCGATTGTAGCTTCAGCTCCATCGCGCTCCTCTGCAGCA 1492
Query 1919 AGAGCTTTAGTCGAGTCTGCAGTTAGAGCTTGGAGATACAAATACCCGACTTCCAAAGTC 1978
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1493 AGAGCTTTAGTCGAGTCTGCGGTCAGAGCTTGGAGATACAAATACCCGACTTCCAAAGTC 1552
Query 1979 GATGACTGTGCCGCTGTTTGCTTGTATCTAGACTCCAACAACACAAACGCCATATCTACA 2038
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1553 GATGACTGTGCCGCTGTTTGCTTGTATCTAGACTCCAGCAACACAAACGCCATATCTACA 1612
Query 2039 GCTTCTTCCATCTCCAAACTGGAAGATG-A-A-GAAGAAGAACTAAAAGC-AGCAACTGA 2094
|||||||||||||||||||| ||||||| | | ||||||||||||||||| | | |||||
Sbjct 1613 GCTTCTTCCATCTCCAAACTTGAAGATGGAGAAGAAGAAGAACTAAAAGCCA-CGACTGA 1671
Query 2095 GGATGATGATGCATCAGGACCAAGCGGTCTAGGCCGTTCGAGTACTGTCAGGACGGGGAA 2154
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1672 GGATGATGATGCATCAGGACCAAGCGGTCTAGGCCGTTCGAGTACTGTCAGGTCGGGGAA 1731
Query 2155 AGAGATTGCTCTTGATGAAAGTGAAGCTGAGAAGCTGATAAAAGAAGCGGATAACTTGGA 2214
|||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1732 AGAGATTGCTCTCGACGAAAGTGAAACTGAGAAGCTGATAAAAGAAGCGGATAACTTGGA 1791
Query 2215 TTCTGAACCTGGAACAGAGTATTCTGCACTAGAAGGTGTTGCAAGAGTTAATACACTTTT 2274
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1792 TTCAGAACCTGGAACAGAGTATTCTGCACTTGAAGGTGTTGCAAGAGTTAATACACTTTT 1851
Query 2275 AAACTTACCAAGATTTGTGCCTGGAAAGTGAAAAGAGAAAGAAGAGTTGAAGTGGAAGAA 2334
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1852 AAACTTACCAAGATTTGTGCCTGGAAAGTGAATAGAGAAAGAAGAGTTGAAGTG-AAGAA 1910
Query 2335 GTTGAGAGGTGATAAATGATATCAAAATAAATCACCCAAGACAAGGTACTGTGtcttttt 2394
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1911 GTTGAGAGGTGATTAATGATATCAAA-TAAATCACCCAAGACAAGGTACTGTGTCTTTTT 1969
Query 2395 gttcatttgtttttccgtttcaactttcttacattgatctctattctttttttGAGTCAT 2454
|||| ||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1970 GTTCTTTTGTTTTTCCTTTTCAACTTTCTT-CATTGATCTCTATTCTTTTTT-GAGTCAT 2027
Query 2455 AATTCATTGGTTTTGGAACCTAAAtttttgtcagttttgtcttt--tat-tgtctttctc 2511
|||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct 2028 AATTCATTGGTTTTGGAACCTAAATTTTTGTCAGTTTTGTCTTTGGTTTATGTCTTTCTC 2087
Query 2512 tcttgttgatgtttatgctgttttttggtcttgtCAGTAAAGAAGAGTGAAAAA-CATCA 2570
||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 2088 TCTTGTTAATGTTTATGTTGTTTTTTGGTCTTGTCAGTAAAGAAGAGTGAAAAAACATCA 2147
Query 2571 CATGATGTAATAATGGCTTGTGTCTGTAATTCTGTGATTCCCCTCAGGCTTAATTTTGTC 2630
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2148 CATCATGTAATAATGGCTTGTGTCTGTAATTCTGTGAATCCCCTCAGGCTTAATTTTGTC 2207
Query 2631 AGTCTGTTGGGAAAATTTCCTGTTTTTATCTTTTCAAAAAGCTCCAATTCCAAGT-ACAG 2689
|||||||||||| |||||||||||| | |||||||||||||||||||||||| || ||||
Sbjct 2208 AGTCTGTTGGGACAATTTCCTGTTTCTGTCTTTTCAAAAAGCTCCAATTCCA-GTTACAG 2266
Query 2690 AATTTGT 2696
|||||||
Sbjct 2267 AATTTGT 2273
Score = 1522 bits (824), Expect = 0.0
Identities = 906/945 (96%), Gaps = 7/945 (1%)
Strand=Plus/Plus
Query 683 AGACATCTCTTTTGCATAGTTTGAATCATCATTGCTCTTTGCGGTGAGAATTGTGATCTA 742
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 149 AGAGATCTCTTTTGCATAGTTTGAATCATCATTGCTCTTTCCGGTGAGAATTGTGATCTA 208
Query 743 AAGGTTCAATCTTTCTCGCTGGAGGACCGTGGGGGTGATTGTTCCATTGTTGGTCTGGAG 802
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 209 AAGGTTCAATCTTTCTCGCTGGAGGACCGTCGGGGTGATTGTACCATTGTTGGTCTGGAG 268
Query 803 TGCCTTCTTAATATAATCAGGGCCCTTAGGATGGGGTCCTGTTTATCTGCAGAGAGCAGG 862
||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 269 TGCCTGCTCAATATAATCAGGGCCCTTAAAATGGGGTCCTGTTTATCTGCAGAGAGCAGG 328
Query 863 AGCCCTAGACCGGGCTCTCCTTGCTCTCCTGCTTTCAGTGTGAGGAAGAGGAAGAACTCT 922
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 329 AGCCCTAGACCGGGCTCTCCTTGCTCTCCTGCTTTTAGTGTGAGGAAGAGGAAGAACTCT 388
Query 923 AAGAAGCGACCTGGTTCTAGGAACTCTTCCTTTGATTACAGAAGAGAAGAACCGTTGAAT 982
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 389 AAGAAGCGACCTGGTTCTAGGAACTCTTCCTTTGATTACCGGAGAGAAGAACCGTTGAAT 448
Query 983 CAGGTTCCGGGGCGCATGTTCTTGAATGGATCAAGTGAGGTTGCTTGTATCTTCACTCAA 1042
||||||||||| || ||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 449 CAGGTTCCGGGCCGGATGTTCTTGAATGGATCAACTGAGGTTGCTTGTATCTACACTCAA 508
Query 1043 CAAGGCAAGAAAGGGCCTAATCAAGATGCCATGGTTGTTTGGGAGGATTTTGGTTCGAGG 1102
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 509 CAAGGCAAGAAAGGGCCTAATCAAGATGCCATGGTTGTTTGGGAGAATTTTGGTTCGAGG 568
Query 1103 ACAGATACAATCTTCTGTGGAGTGTTTGATGGACATGGTCCATATGGTCATATGGTTGCA 1162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 ACAGATACAATCTTCTGTGGAGTGTTTGATGGACATGGTCCATATGGTCATATGGTTGCA 628
Query 1163 AAGAGGGTTAGAGACAATCTTCCTCTCAAATTAAGTGCTTATTGGGAAGCAAAAGTACCA 1222
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 AAGAGAGTCAGAGACAATCTTCCTCTCAAATTAAGTGCTTATTGGGAAGCAAAAGTACCA 688
Query 1223 GTTGAAGGTGTCCTAAAGGCAATCACCACAGAAACCGTTAATAAT-TCAACGAACATTAA 1281
||||||||||| || |||||||||||||| || || || |||||| | ||| ||||||||
Sbjct 689 GTTGAAGGTGTTCTTAAGGCAATCACCACCGACACTGTCAATAATGT-AACCAACATTAA 747
Query 1282 CAACCCTGAAGA---TGCTGCTGCTGCTGCTTTTGT-ATCTGCTGAAGAAGAAACTAGGA 1337
|||||||||||| ||||||||||||||||||||| | |||||||||||||| ||||||
Sbjct 748 CAACCCTGAAGATGCTGCTGCTGCTGCTGCTTTTGTCA-CTGCTGAAGAAGAACCTAGGA 806
Query 1338 CATCTGCTGACATGGAGGAGGAGAACACGGAATCCCAACCGGAATTGTTTCAAACGCTGA 1397
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 807 CATCTGCTGACATGGAGGAGGAGAACACAGAAACCCAACCGGAATTGTTTCAAACGCTGA 866
Query 1398 AAGAGTCGTTTCTTAAGGCTTTTAAAGTTATGGATAGAGAACTTAAATTCCATGGAAGTG 1457
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 867 AAGAGTCGTTTCTTAAGGCTTTTAAAGTTATGGATAGAGAGCTTAAATTCCATGGAAGTG 926
Query 1458 TTGACTGTTTCTGCAGTGGGACAACAGCTGTAACCTTGATCAAGCAGGGTCAGTATCTCG 1517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 927 TTGACTGTTTCTGCAGTGGGACAACAGCTGTAACCTTGATCAAGCAGGGTCAGTATCTCG 986
Query 1518 TTGTTGGAAATGTTGGGGACTCTAGAGCTGTAATGGGTACAAGAGACAGTGAAAATGCTC 1577
||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||
Sbjct 987 TTGTTGGAAATGTTGGGGATTCCAGAGCTGTAATGGGTACAAGAGACAGTGAAAATACTC 1046
Query 1578 TTGTCGCTGTTCAACTAACTGTGGATCTTAAGCCAAATCTCCCAG 1622
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047 TTGTCGCTGTTCAACTAACTGTGGATCTTAAGCCAAATCTCCCAG 1091
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133895570867
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5