BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477518
Length=1556
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02760.1 | Symbols: | Class II aaRS and biotin synthetases ... 2479 0.0
> AT3G02760.1 | Symbols: | Class II aaRS and biotin synthetases
superfamily protein | chr3:597359-600650 REVERSE LENGTH=2881
Length=2881
Score = 2479 bits (1342), Expect = 0.0
Identities = 1461/1518 (96%), Gaps = 10/1518 (1%)
Strand=Plus/Plus
Query 24 GCAATG-GGTGGAGCAAATCGTAAATCTTATCAATCCTGAGGGTCGTGGTTTTGATAGCT 82
|||||| || |||||||||| |||||||| |||| || |||||||| ||||||||||||
Sbjct 1227 GCAATGTGG-GGAGCAAATCTTAAATCTTTTCAACCCAGAGGGTCGCAGTTTTGATAGCT 1285
Query 83 TCTTGGATAAAGTGAAAGAGATTGTAGAAAGTAATGAAAACAGGAGACTTCCCAAGCTTC 142
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1286 TGTTGGATAAAGTGAAAGAGATTGTAGAAAGTAATGAAAATAGGAGACTTCCCAAGCTTC 1345
Query 143 CAAAGGGAACTCGAGATTTTGCTAAAGAACAAATGGCAGTCCGAGAAAAAGCCTTTTCAA 202
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1346 CAAAGGGAACTCGAGATTTCGCTAAAGAACAAATGGCAGTCCGAGAAAAAGCCTTTTCAA 1405
Query 203 TCATACAAAACGTTTTCAAGAGGCATGGTGCAACTGCACTTGATACTCCTGTTTTTGAAT 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1406 TCATACAAAACGTTTTCAAGAGGCATGGTGCAACTGCACTTGATACTCCTGTTTTTGAAT 1465
Query 263 TGAGAGAGACCCTTATGGGAAAGTACGGAGAAGACTCAAAATTGGTTTATGATATTGCTG 322
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1466 TGAGAGAGACCCTTATGGGAAAGTACGGAGAAGACTCGAAATTGGTTTATGATATTGCTG 1525
Query 323 ATCAGGGTGGAGAGCTTTGCTCTTTACGATATGATTTAACTGTTCCATTTGCACGGTATG 382
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1526 ATCAGGGTGGAGAGCTTTGCTCTTTACGATATGATCTAACTGTTCCATTTGCACGGTATG 1585
Query 383 TGGCGATGAATGGAATCACATCATTCAAAAGATACCAAATAGCAAAGGTGTACAGAAGGG 442
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1586 TGGCTATGAATGGAATCACATCATTCAAAAGATACCAAATAGCAAAGGTGTACAGAAGGG 1645
Query 443 ATAATCCATCCAAAGGGAGATACAGAGAGTTTTATCAGTGTGATTTTGATATCGCTGGTT 502
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1646 ATAATCCATCTAAAGGGAGATACAGAGAGTTTTATCAGTGTGATTTTGATATCGCTGGTT 1705
Query 503 TGTTCGAACCAATGGGACCCGATTTTGAAATTGTCAAGATATTAACTGAACTCCTCGATG 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1706 TGTTCGAACCAATGGGACCCGATTTTGAAATTGTCAAGATATTAACTGAACTCCTCGATG 1765
Query 563 AATTGGAGATTGGAGATTATGAGGTGAAACTGAATCACCGCAAGTTGCTTGATGGAATGC 622
| || || || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1766 AGTTAGAAATAGGAGATTATGAGGTGAAACTGAATCACCGCAAGTTGCTTGATGGAATGC 1825
Query 623 TGGAGATATGTGGAGTACCACCTGAGAAATTCAGAACCATCTGTTCGAGTATCGACAAGT 682
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1826 TGGAGATATGTGGAGTACCACCTGAGAAATTCAGAACCATCTGTTCGAGTATCGACAAGC 1885
Query 683 TAGACAAGCAATCGTTTGAGCAAGTGAAGAAAGAAATGGTGGAGGAGAAGGGCTTGTCTT 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1886 TAGACAAGCAATCGTTTGAGCAAGTGAAGAAAGAAATGGTGGAGGAGAAGGGCTTGTCTT 1945
Query 743 CAGAGATTGCAGACAGAATTGGCAACTTTGTTAAGGAGAAGGGAGCTCCTTTGGAGCTAT 802
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1946 CAGAGATTGCAGACAGAATTGGCAACTTCGTTAAGGAGAAGGGAGCTCCTTTGGAGCTGT 2005
Query 803 TGTCTAAACTGAGACAAGAAGGGAGTGAGTTCTTAGATAACCAGTCATCAAGAGAAGCTC 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2006 TGTCTAAACTGAGACAAGAAGGGAGTGAGTTCTTAGATAACCAGTCATCAAGAGAAGCTC 2065
Query 863 TGGATGAGTTGAGTATCATGTTTGAAGCTCTTGAAAGATCAAAGTGCAGTCACAGAATAG 922
| |||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||
Sbjct 2066 TTGATGAGTTGAGTATCATGTTTGAAGCTCTTAAAAGATCAAAGTGCAGTGAGAGAATAG 2125
Query 923 TCTTTGATCTAAGTCTAGCTAGAGGTCTTGATTACTACACGGGCGTCATCTTTGAAGCTG 982
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2126 TCTTTGATCTAAGTCTAGCTAGAGGTCTTGATTACTACACCGGCGTCATCTTTGAAGCTG 2185
Query 983 TTTGTATAGGAGCAGAGGTGGGATCAATTGGTGCTGGTGGGCGATACGATAACCTTATAG 1042
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2186 TTTGTATAGGAGCAGAGGTGGGATCAATTGGTGCTGGTGGGCGATATGATAACCTTATAG 2245
Query 1043 GAATGTTTGGAACAAAGCAAGTCCCTGCGGTTGGGATGAGCCTGGGAATCGAGAGAGTGT 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2246 GAATGTTTGGAACAAAGCAAGTCCCTGCGGTTGGGATGAGCCTGGGAATCGAGAGAGTGT 2305
Query 1103 TTAACATAATGGAAGAGCTTAACGAGAAACAGAAACAAGTGATTCGACCAACGGAGACAC 1162
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2306 TTAACATAATGGAAGAACTTAACGAGAAACAGAAACAAGTGATTCGACCAACGGAGACAC 2365
Query 1163 AGGTTTTGGTTAGTATAATGGTGGATAATAAACTAGCGGAAGCAGCAGAACTGGTTAGTC 1222
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2366 AGGTGTTGGTTAGTATAATGGTGGATAATAAACTAGCGGAAGCAGCAGAACTGGTAAGTC 2425
Query 1223 GGTTATGGGATGCTAAGATCAACGCAGAGTATCTTGTGAGCAAGAGGAAAGAAAAGCATT 1282
|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2426 AGTTATGGGGTGCTAAGATCAACGCAGAGTATCTAGTGAGCAAGAGGAAAGAAAAGCATT 2485
Query 1283 TCAATCGAGCAAAGGAATCAGGGATTCCCTGGATGGTGATGGTAGGAGAAAAGGAACTCA 1342
||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 2486 TCAATCGTGCAAAGGAATCAGGGATTCCTTGGATGGTGATGGTAGGCGAAAAAGAACTCA 2545
Query 1343 GTGGAGGTTTTGTGACATTGAAGAAGCTCGAGAAGGGAAGTGAAGAGAAAGAAGATCAAA 1402
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2546 GTGGAAGTTTTGTGACATTGAAGAAGCTCGAGAAGGGAAGTGAAGAGAAAGAAGATCAAA 2605
Query 1403 CATGTTCTAGAGATAGTTTCGTGGGAGAATTGTTGAAACTACT--GAGTTGTTGAAAAGA 1460
||||| |||||||| ||||||||| ||||||| ||||||||| |||| ||||||||||
Sbjct 2606 CATGTACTAGAGATCGTTTCGTGGAAGAATTGAAGAAACTACTCTGAGTCGTTGAAAAGA 2665
Query 1461 GATGAAAGGTACACAC--TCACTCCCTGGTCCGATGCCCAGAAAAAAGGAATCATACTGT 1518
||||||||||||||| ||||||| |||| ||||||||||| ||||||||||| | ||
Sbjct 2666 AATGAAAGGTACACACACTCACTCC-TGGTTCGATGCCCAGACAAAAGGAATCACA--GT 2722
Query 1519 GTTTTGCAtt-ttttttG 1535
|||||||||| |||||||
Sbjct 2723 GTTTTGCATTCTTTTTTG 2740
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76806833850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5